prot_E-siliculosus-1a_F_contig1262.1620.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig1262.1620.1
Unique Nameprot_E-siliculosus-1a_F_contig1262.1620.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length94
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1262.1620.1 vs. uniprot
Match: D7FXS6_ECTSI (U6 snRNA-associated Sm-like protein LSm3 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXS6_ECTSI)

HSP 1 Score: 181 bits (458), Expect = 1.270e-57
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0
Query:    1 MSSSVEEPLDLIRLSLDERIHVKCRGERELRGKLHSYDQHLNMVLGDVEETVTTVEVDEDTYEEIVRTSKRSIEMLFVRGDVVILVSPPVRTT 93
            MSSSVEEPLDLIRLSLDERIHVKCRGERELRGKLHSYDQHLNMVLGDVEETVTTVEVDEDTYEEIVRTSKRSIEMLFVRGDVVILVSPPVRTT
Sbjct:    1 MSSSVEEPLDLIRLSLDERIHVKCRGERELRGKLHSYDQHLNMVLGDVEETVTTVEVDEDTYEEIVRTSKRSIEMLFVRGDVVILVSPPVRTT 93          
BLAST of mRNA_E-siliculosus-1a_F_contig1262.1620.1 vs. uniprot
Match: A0A7S2FJT0_9STRA (U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FJT0_9STRA)

HSP 1 Score: 162 bits (409), Expect = 6.200e-50
Identity = 81/93 (87.10%), Postives = 89/93 (95.70%), Query Frame = 0
Query:    1 MSSSVEEPLDLIRLSLDERIHVKCRGERELRGKLHSYDQHLNMVLGDVEETVTTVEVDEDTYEEIVRTSKRSIEMLFVRGDVVILVSPPVRTT 93
            ++ SVEEPLDLIRLSLDERI+VKCRG+RELRGKLH+YDQHLNMVLGDVEETVTT E+DEDT EEI+RTSKR IEMLFVRGDVVILVSPP+RTT
Sbjct:   17 VTMSVEEPLDLIRLSLDERIYVKCRGDRELRGKLHAYDQHLNMVLGDVEETVTTQEIDEDTSEEIIRTSKRMIEMLFVRGDVVILVSPPLRTT 109          
BLAST of mRNA_E-siliculosus-1a_F_contig1262.1620.1 vs. uniprot
Match: A0A7S2GP21_9STRA (U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GP21_9STRA)

HSP 1 Score: 160 bits (406), Expect = 1.430e-49
Identity = 81/90 (90.00%), Postives = 87/90 (96.67%), Query Frame = 0
Query:    4 SVEEPLDLIRLSLDERIHVKCRGERELRGKLHSYDQHLNMVLGDVEETVTTVEVDEDTYEEIVRTSKRSIEMLFVRGDVVILVSPPVRTT 93
            SVEEPLDLIRLSLDERI+VKCRG+RELRGKLH+YDQHLNMVLGDVEETVTT E+DEDT EEI+RTSKR IEMLFVRGDVVILVSPP+RTT
Sbjct:   13 SVEEPLDLIRLSLDERIYVKCRGDRELRGKLHAYDQHLNMVLGDVEETVTTQELDEDTNEEIIRTSKRMIEMLFVRGDVVILVSPPLRTT 102          
BLAST of mRNA_E-siliculosus-1a_F_contig1262.1620.1 vs. uniprot
Match: A0A4D9CUN8_9STRA (U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CUN8_9STRA)

HSP 1 Score: 155 bits (392), Expect = 1.480e-47
Identity = 75/92 (81.52%), Postives = 90/92 (97.83%), Query Frame = 0
Query:    1 MSSSVEEPLDLIRLSLDERIHVKCRGERELRGKLHSYDQHLNMVLGDVEETVTTVEVDEDTYEEIVRTSKRSIEMLFVRGDVVILVSPPVRT 92
            MSSSV+EPLDLIRLSL+ERI+VKCRGERELRGKLH++D+HLNM+LG+VEETVTT E+DE+T EEI+RTS+R++EMLFVRGDVVILVSPP+RT
Sbjct:    1 MSSSVDEPLDLIRLSLEERIYVKCRGERELRGKLHAFDRHLNMILGEVEETVTTPEIDEETDEEIIRTSRRTVEMLFVRGDVVILVSPPLRT 92          
BLAST of mRNA_E-siliculosus-1a_F_contig1262.1620.1 vs. uniprot
Match: A0A0M0JVC1_9EUKA (U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JVC1_9EUKA)

HSP 1 Score: 154 bits (388), Expect = 6.230e-47
Identity = 75/91 (82.42%), Postives = 86/91 (94.51%), Query Frame = 0
Query:    2 SSSVEEPLDLIRLSLDERIHVKCRGERELRGKLHSYDQHLNMVLGDVEETVTTVEVDEDTYEEIVRTSKRSIEMLFVRGDVVILVSPPVRT 92
            S+ V+EP+DL+RLSLDERIHVK RG+RELRGKLH+YDQHLNMVLGDVEE VTTVEVDE+TYEEI++TSKR IEMLFVRGD VIL+SPP+RT
Sbjct:    3 STLVKEPIDLVRLSLDERIHVKMRGDRELRGKLHAYDQHLNMVLGDVEEVVTTVEVDEETYEEIIKTSKRQIEMLFVRGDGVILISPPLRT 93          
BLAST of mRNA_E-siliculosus-1a_F_contig1262.1620.1 vs. uniprot
Match: L8HA54_ACACA (U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HA54_ACACA)

HSP 1 Score: 150 bits (378), Expect = 2.750e-45
Identity = 75/92 (81.52%), Postives = 86/92 (93.48%), Query Frame = 0
Query:    1 MSSSVEEPLDLIRLSLDERIHVKCRGERELRGKLHSYDQHLNMVLGDVEETVTTVEVDEDTYEEIVRTSKRSIEMLFVRGDVVILVSPPVRT 92
            + S+VEEPLDLIRLSLD+RI+VK RGERELRGKLH+YDQHLNMVLGDVEETVTTVE+DE+T EEI++  KR++EMLFVRGD VILVSPPVRT
Sbjct:   11 LGSTVEEPLDLIRLSLDDRIYVKLRGERELRGKLHAYDQHLNMVLGDVEETVTTVEMDEETDEEIIKRRKRTVEMLFVRGDGVILVSPPVRT 102          
BLAST of mRNA_E-siliculosus-1a_F_contig1262.1620.1 vs. uniprot
Match: K3ZB54_SETIT (U6 snRNA-associated Sm-like protein LSm3 n=9 Tax=Poaceae TaxID=4479 RepID=K3ZB54_SETIT)

HSP 1 Score: 149 bits (375), Expect = 6.560e-45
Identity = 74/89 (83.15%), Postives = 84/89 (94.38%), Query Frame = 0
Query:    4 SVEEPLDLIRLSLDERIHVKCRGERELRGKLHSYDQHLNMVLGDVEETVTTVEVDEDTYEEIVRTSKRSIEMLFVRGDVVILVSPPVRT 92
            +V+EPLDLIRLSLDERI+VK R ERELRGKLH+YDQHLNM+LGDVEETVTTVE+D++TYEEIVRTSKR+I  LFVRGD VILVSPP+RT
Sbjct:    8 AVKEPLDLIRLSLDERIYVKLRSERELRGKLHAYDQHLNMILGDVEETVTTVEIDDETYEEIVRTSKRTIPFLFVRGDGVILVSPPLRT 96          
BLAST of mRNA_E-siliculosus-1a_F_contig1262.1620.1 vs. uniprot
Match: T1JAU3_STRMM (U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=Strigamia maritima TaxID=126957 RepID=T1JAU3_STRMM)

HSP 1 Score: 148 bits (374), Expect = 1.120e-44
Identity = 72/92 (78.26%), Postives = 87/92 (94.57%), Query Frame = 0
Query:    2 SSSVEEPLDLIRLSLDERIHVKCRGERELRGKLHSYDQHLNMVLGDVEETVTTVEVDEDTYEEIVRTSKRSIEMLFVRGDVVILVSPPVRTT 93
            S++VEEPLDLIRLSLDERI+VK R ERELRG+LH+YDQHLNM+LGDVEETVTTVE+DE+TYEE+ +T+KR+I MLFVRGD VILVSPP+R++
Sbjct:   11 SNTVEEPLDLIRLSLDERIYVKMRNERELRGRLHAYDQHLNMILGDVEETVTTVEIDEETYEEVYKTTKRNIPMLFVRGDGVILVSPPMRSS 102          
BLAST of mRNA_E-siliculosus-1a_F_contig1262.1620.1 vs. uniprot
Match: R1DJQ4_EMIHU (U6 snRNA-associated Sm-like protein LSm3 n=2 Tax=Eukaryota TaxID=2759 RepID=R1DJQ4_EMIHU)

HSP 1 Score: 148 bits (373), Expect = 1.170e-44
Identity = 72/93 (77.42%), Postives = 87/93 (93.55%), Query Frame = 0
Query:    1 MSSSVEEPLDLIRLSLDERIHVKCRGERELRGKLHSYDQHLNMVLGDVEETVTTVEVDEDTYEEIVRTSKRSIEMLFVRGDVVILVSPPVRTT 93
            MSS V EPLDL+RLSLDERI VK RG+R+LRG+LH++DQHLNMVLG+VEETVTT+EVDE+TYEEI++TSKR I+MLFVRGD V+LVSPP+RT+
Sbjct:    1 MSSVVAEPLDLVRLSLDERILVKLRGDRDLRGRLHAFDQHLNMVLGEVEETVTTIEVDEETYEEIIKTSKRQIDMLFVRGDGVVLVSPPLRTS 93          
BLAST of mRNA_E-siliculosus-1a_F_contig1262.1620.1 vs. uniprot
Match: A0A383W7B2_TETOB (U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383W7B2_TETOB)

HSP 1 Score: 148 bits (373), Expect = 1.250e-44
Identity = 69/90 (76.67%), Postives = 86/90 (95.56%), Query Frame = 0
Query:    3 SSVEEPLDLIRLSLDERIHVKCRGERELRGKLHSYDQHLNMVLGDVEETVTTVEVDEDTYEEIVRTSKRSIEMLFVRGDVVILVSPPVRT 92
            ++V+EPLDLI+LSLDERI+VKCRGERELRG+LH+YDQHLNM+LG+VEETVTTVE+D++TYEEI++T KRSI  LFVRGD VIL+SPP+R+
Sbjct:    6 ATVKEPLDLIKLSLDERIYVKCRGERELRGRLHAYDQHLNMILGEVEETVTTVEIDDETYEEIIKTQKRSIPFLFVRGDSVILISPPLRS 95          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1262.1620.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXS6_ECTSI1.270e-57100.00U6 snRNA-associated Sm-like protein LSm3 n=2 Tax=E... [more]
A0A7S2FJT0_9STRA6.200e-5087.10U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=F... [more]
A0A7S2GP21_9STRA1.430e-4990.00U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=D... [more]
A0A4D9CUN8_9STRA1.480e-4781.52U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=N... [more]
A0A0M0JVC1_9EUKA6.230e-4782.42U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=C... [more]
L8HA54_ACACA2.750e-4581.52U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=A... [more]
K3ZB54_SETIT6.560e-4583.15U6 snRNA-associated Sm-like protein LSm3 n=9 Tax=P... [more]
T1JAU3_STRMM1.120e-4478.26U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=S... [more]
R1DJQ4_EMIHU1.170e-4477.42U6 snRNA-associated Sm-like protein LSm3 n=2 Tax=E... [more]
A0A383W7B2_TETOB1.250e-4476.67U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=T... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 10..88
e-value: 5.9E-21
score: 85.6
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 12..88
e-value: 5.1E-20
score: 70.9
NoneNo IPR availableGENE3D2.30.30.100coord: 1..91
e-value: 5.3E-30
score: 105.1
NoneNo IPR availablePANTHERPTHR13110:SF11coord: 3..92
IPR040002U6 snRNA-associated Sm-like protein Lsm3PANTHERPTHR13110U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM3coord: 3..92
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 7..89

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1262contigE-siliculosus-1a_F_contig1262:25213..28314 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1262.1620.1mRNA_E-siliculosus-1a_F_contig1262.1620.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig1262 24512..28380 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig1262.1620.1 ID=prot_E-siliculosus-1a_F_contig1262.1620.1|Name=mRNA_E-siliculosus-1a_F_contig1262.1620.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=94bp
MSSSVEEPLDLIRLSLDERIHVKCRGERELRGKLHSYDQHLNMVLGDVEE
TVTTVEVDEDTYEEIVRTSKRSIEMLFVRGDVVILVSPPVRTT*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR010920LSM_dom_sf
IPR040002Sm-like_LSM3
IPR001163LSM_dom_euk/arc