prot_E-siliculosus-1a_F_contig126.1603.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig126.1603.1
Unique Nameprot_E-siliculosus-1a_F_contig126.1603.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length96
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig126.1603.1 vs. uniprot
Match: D8LBS7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBS7_ECTSI)

HSP 1 Score: 64.3 bits (155), Expect = 5.970e-12
Identity = 37/50 (74.00%), Postives = 37/50 (74.00%), Query Frame = 0 
Query:    1 SRRRDARLLQLRGVERXXXXXXXXXXGDLANDQQPLGSDHVQDDDQQHVA 50
            SRRRD  LLQLRGVER           DLANDQQPLGSDHVQDDDQQHVA
Sbjct:    2 SRRRDDLLLQLRGVERRRRVIC----SDLANDQQPLGSDHVQDDDQQHVA 47
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig126.1603.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LBS7_ECTSI5.970e-1274.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..76
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 95..95
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 77..94
NoneNo IPR availableTMHMMTMhelixcoord: 77..94

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig126contigE-siliculosus-1a_F_contig126:29208..30334 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig126.1603.1mRNA_E-siliculosus-1a_F_contig126.1603.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig126 28007..30334 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig126.1603.1 ID=prot_E-siliculosus-1a_F_contig126.1603.1|Name=mRNA_E-siliculosus-1a_F_contig126.1603.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=96bp
SRRRDARLLQLRGVERRRRAPLLELRGDLANDQQPLGSDHVQDDDQQHVA
RAIAARRVGSVILATPSSEHGRFLRRSACLSVCVLIFAIEFLFVG*
back to top