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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig126.1603.1 vs. uniprot
Match: D8LBS7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBS7_ECTSI) HSP 1 Score: 64.3 bits (155), Expect = 8.830e-10 Identity = 37/50 (74.00%), Postives = 37/50 (74.00%), Query Frame = 1
Query: 1 SRRRDARLLQLRGVERXXXXXXXXXXGDLANDQQPLGSDHVQDDDQQHVA 150
SRRRD LLQLRGVER DLANDQQPLGSDHVQDDDQQHVA
Sbjct: 2 SRRRDDLLLQLRGVERRRRVIC----SDLANDQQPLGSDHVQDDDQQHVA 47
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 0 |
| Stop | 1 |
| Cds size | 288 |
| Model size | 1489 |
| Exons | 2 |
| Ec32 ortholog | Ec-27_002850.1 |
| Ec32 ortholog description | expressed unknown protein |
| Hectar predicted targeting category | signal anchor |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927781.255713-UTR-E-siliculosus-1a_F_contig126:28006..29207 | 1622927781.255713-UTR-E-siliculosus-1a_F_contig126:28006..29207 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | UTR | E-siliculosus-1a_F_contig126 28007..29207 - |
| 1696318677.1471307-UTR-E-siliculosus-1a_F_contig126:28006..29207 | 1696318677.1471307-UTR-E-siliculosus-1a_F_contig126:28006..29207 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | UTR | E-siliculosus-1a_F_contig126 28007..29207 - |
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig126.1603.1 >prot_E-siliculosus-1a_F_contig126.1603.1 ID=prot_E-siliculosus-1a_F_contig126.1603.1|Name=mRNA_E-siliculosus-1a_F_contig126.1603.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=96bp
SRRRDARLLQLRGVERRRRAPLLELRGDLANDQQPLGSDHVQDDDQQHVA
RAIAARRVGSVILATPSSEHGRFLRRSACLSVCVLIFAIEFLFVG* back to topmRNA from alignment at E-siliculosus-1a_F_contig126:28007..30334- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig126.1603.1 ID=mRNA_E-siliculosus-1a_F_contig126.1603.1|Name=mRNA_E-siliculosus-1a_F_contig126.1603.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2328bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig126:28007..30334- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
AGCCGACGACGAGATGCCCGTCTCCTTCAGCTTCGAGGAGTGGAACGACG
ACGACGAGCCCCTCTCCTTGAGCTTCGCGGCGTGAAACGACGAGTGATTG
AAGTGTTCGGTAGGTGACGGACAATTTGATAAATTTATTGTTTTGTTTGG
CATTTCATAATCGGGTGGGAACGAAGCACAAACGAACGCATTATTATTAT
TGTTTACTGTACATGCTTTTTATTGCTATGCGCGCACGCATTTGTCGAGT
CCCACCAAACAACTACCGACAAACACAAGCGAGGAGCAAAAGCCTCCTCC
CCACTCGACTTCCAATATTAGGCAATCGTGTTTTCTTGCGATGTGATGTA
TGGTTGGAAACGGACACATAATACCCGCCGTTTCTCTGTTGGCCGGACAT
CAAGATCGTATGCATACAGAAGTACAAGTGTCTGGTAGGGTATCGGCAGT
GCCACATACGGGGGAGGGGCTTCGTGAGGCGTCAAAAGTGGAACAGCACT
CACTCACAGAAATGTCCTGTAGGGTATCGGGTCAAACCCAACAGAAAAAT
CGGTTTTGTGAGAAGGTCGTACAGAACTCATAGAACGTTCGGGTAGGTTC
ATAAATGCTACATACAGATGTTTTCTGTACGGTATTGGAGTGTCACATCA
TATAACTCATCGAACCGACGTTTCTGTAGGGTTTCGGAGGTACCGCAGAT
CCCCTGCAACGTTCTGTGGGGTAGCTACCCGGAGAGAAACCGCCGATACA
CTTGTGTGGGTACCCTACCGAACACACCCTTTGTTCGTGTCCCCTTGTTC
GTTTCTTTGCATGCTCGGCCTTTGTTTGTGCTCTTGACGTCACTTTTTCC
CCTGATGCGTTCCTTCCCGCTTCCTTTTTCGTCCATGTTTCCGGGTCTTT
TTTTTTACATATATATTTAGGACCTGGCGAACGACCAACAACCCTTGGGC
TCCGACCACGTACAAGATGATGACCAACAACATGTTGCGCGAGCCATCGC
CGCCCGCCGTGTTGGGTCAGTAATCCTGGCAACACCATCATCGGAGCACG
GCCGATTTCTTCGTCGTTCGGCCTGTCTGTCTGTCTGTGTGCTCATTTTC
GCTATTGAGTTTTTGTTCGTTGGTTGAGTCTCAGAGTAAGTAAGGCAGCC
CGTGTTGGCGGAAGAAGACGGAGGAATAAGTCTGTGTTTTGCCAAGTAAC
GAAGCGCGTGCGGTTGGAATGGTTTATTGTTGTAGCCGATGTTGATGGAA
GGTTATTGTAGCTAAGGTAGATTCCGGTGTTGACGGGAAAGGACGTAAGT
CTGTGTCTTGCCAATACATATGTCCAGACGTTGTGGCCGGAGTTCGGCAA
GAGCATCACCAGGGGATGGTAGCGACTTGGCTCAACCGACCGTCGCATTG
CGGCTACACGTTGGGAACTTGTCGGAGCACACGGTGGTGGAGAGCAGTCC
TAACCATTCGTCAAGCACGCACGTTTGCCCCAAGAATTTCAGCCGAGTGC
TGCGGGTGTACGTAGGCTCGTATGTAGTCTTTACATTTCCGAACATCCCT
GAGTGTCCCGTCTTTGAAACGTTGAACACGCGAGCAACAGTTGCAGCATG
ATTACACATGTAGATTGTTGGCGTGCGCCGTAGACTAGTCAATCGAGATC
TGGAGTTTTTTTTGAGAAAGTACCGTTGGGTATGTAGGTTGTACCCGCTA
GCTAGGAGGAGAGTGTTTTTGCTTCGATTTCCAAACTCCTGGCTGAAAAC
GACCTAGTCTAGTCTACATAGGCCCCAAAATCGAAAATCGAGCAAAAAGG
GGGGGGGGGCGCGGACATATAATAAGGGGTTGATCGACGGGTTCAACACC
GAGGCGTTTGCCCCTTCTGGGCGTTGTCGAACATGCACATATATCTGGCA
CCTCCCAGGCTCGCCCTCAGCAGCCTCCGCTCAGGGAGGATTCATTTGGG
TGATTGTGTGCATAGATGCGTGGATCGTGTTCAATTAAACATTTCCGTCT
TGGTCAGAGGTAGAACAAGCCGTGGGGTAAGCAAGGGCTGCCTTCGCACC
CCTCTTGAACGTTCGTTTTCGTGTGCTGGCCTGACTGGGTGAGCCGGCCC
GGCTACATTGTGGAGCATATGGACCAGAATGGGGAACCTCTTCGTTGGGC
TTAGCGAGTAATTTAAATATGTGCATTGTGCATGTCGGTATTCTGTGCTT
ACCCTTGTCGCACCGATGCAACCCACATGTTGTGGCAACCCACATGTTGT
GGGGAAGGATGCTTTTTTCTGTGGATCAAGGACAAACCGAAATACACTGC
ATGCTGTAAAAATCAATCTTGACCCTTG back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig126:28007..30334- >mRNA_E-siliculosus-1a_F_contig126.1603.1 ID=mRNA_E-siliculosus-1a_F_contig126.1603.1|Name=mRNA_E-siliculosus-1a_F_contig126.1603.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=576bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig126:28007..30334- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
AGCCGACGACGAGATGCCCGTCTCCTTCAGCTTCGAGGAGTGGAACGACG
ACGACGAGCCCCTCTCCTTGAGCTTCGCGGCAGCCGACGACGAGATGCCC
GTCTCCTTCAGCTTCGAGGAGTGGAACGACGACGACGAGCCCCTCTCCTT
GAGCTTCGCGGCGACCTGGCGAACGACCAACAACCCTTGGGCTCCGACCA
CGTACAAGATGATGACCAACAACATGTTGCGCGAGCCATCGCCGCCCGCC
GTGTTGGGTCAGTAATCCTGGCAACACCATCATCGGAGCACGGCCGATTT
CTTCGTCGTTCGGCCTGTCTGTCTGTCTGTGTGCTCATTTTCGCTATTGA
GTTTTTGTTCGTTGGTTGAGACCTGGCGAACGACCAACAACCCTTGGGCT
CCGACCACGTACAAGATGATGACCAACAACATGTTGCGCGAGCCATCGCC
GCCCGCCGTGTTGGGTCAGTAATCCTGGCAACACCATCATCGGAGCACGG
CCGATTTCTTCGTCGTTCGGCCTGTCTGTCTGTCTGTGTGCTCATTTTCG
CTATTGAGTTTTTGTTCGTTGGTTGA back to top
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