prot_E-siliculosus-1a_F_contig1257.1590.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig1257.1590.1
Unique Nameprot_E-siliculosus-1a_F_contig1257.1590.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length175
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1257.1590.1 vs. uniprot
Match: A0A6H5KFS2_9PHAE (DNA topoisomerase 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KFS2_9PHAE)

HSP 1 Score: 364 bits (935), Expect = 7.220e-114
Identity = 174/175 (99.43%), Postives = 174/175 (99.43%), Query Frame = 0
Query:    1 MIMTDQDHDGSHIKGLLINFVHHYWPSLLKIDGFLQEFITPIVKVSKGRNELSFYTVPEYTVWKEGHANGKGWNAKYYKGLGTSTAKEAKEYFAALDTHQLEFEWQDDDRDDDLIDMAFSKKRVEDRKEWLRGFKAGTHADYNVESVTYESFINKELILFSMEDNKRSIPCLVDG 175
            MIMTDQDHDGSHIKGLLINFVHHYWPSLLKIDGFLQEFITPIVKVSKGRNELSFYTVPEYTVWKEGHANGKGWNAKYYKGLGTSTAKEAKEYFAALDTHQLEFEWQDD RDDDLIDMAFSKKRVEDRKEWLRGFKAGTHADYNVESVTYESFINKELILFSMEDNKRSIPCLVDG
Sbjct:  476 MIMTDQDHDGSHIKGLLINFVHHYWPSLLKIDGFLQEFITPIVKVSKGRNELSFYTVPEYTVWKEGHANGKGWNAKYYKGLGTSTAKEAKEYFAALDTHQLEFEWQDDHRDDDLIDMAFSKKRVEDRKEWLRGFKAGTHADYNVESVTYESFINKELILFSMEDNKRSIPCLVDG 650          
BLAST of mRNA_E-siliculosus-1a_F_contig1257.1590.1 vs. uniprot
Match: A0A835YRC0_9STRA (DNA topoisomerase 2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRC0_9STRA)

HSP 1 Score: 270 bits (691), Expect = 1.660e-81
Identity = 120/175 (68.57%), Postives = 146/175 (83.43%), Query Frame = 0
Query:    1 MIMTDQDHDGSHIKGLLINFVHHYWPSLLKIDGFLQEFITPIVKVSKGRNELSFYTVPEYTVWKEGHANGKGWNAKYYKGLGTSTAKEAKEYFAALDTHQLEFEWQDDDRDDDLIDMAFSKKRVEDRKEWLRGFKAGTHADYNVESVTYESFINKELILFSMEDNKRSIPCLVDG 175
            MIMTDQDHDGSHIKGLLIN +H++WPSLL+++GFL EFITPIVK  +   ELSF+TVPEY  W+  HA  +GW+ KYYKGLGTSTAKEAKEYFA LD HQ+ FEW+DD  D D++D+ F+KKR EDRKEWLR F  GT  DY V+++TY++F N+ELILFS+EDNKRS+PC+VDG
Sbjct:  471 MIMTDQDHDGSHIKGLLINLLHYFWPSLLRVEGFLLEFITPIVKCVRAGRELSFFTVPEYETWRAAHAQQRGWSIKYYKGLGTSTAKEAKEYFAKLDQHQIPFEWRDDAADGDMVDLVFNKKRAEDRKEWLRNFVPGTFVDYGVDAMTYDAFFNRELILFSIEDNKRSLPCMVDG 645          
BLAST of mRNA_E-siliculosus-1a_F_contig1257.1590.1 vs. uniprot
Match: A0A482RTD7_9ARCH (DNA topoisomerase (ATP-hydrolyzing) (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RTD7_9ARCH)

HSP 1 Score: 265 bits (677), Expect = 1.240e-80
Identity = 124/175 (70.86%), Postives = 144/175 (82.29%), Query Frame = 0
Query:    1 MIMTDQDHDGSHIKGLLINFVHHYWPSLLKIDGFLQEFITPIVKVSKGRNELSFYTVPEYTVWKEGHANGKGWNAKYYKGLGTSTAKEAKEYFAALDTHQLEFEWQDDDRDDDLIDMAFSKKRVEDRKEWLRGFKAGTHADYNVESVTYESFINKELILFSMEDNKRSIPCLVDG 175
            MIMTDQDHDGSHIKGLLINF+HH+WPSLL I+GFLQ+FITPIVK +KG+ ELSFYT+PEY  WKE +  GKGW  KYYKGLGTS+A EAKEYF+ LDTH+L+F W  DDR DDLIDMAF+KKRVEDRK WL G +AG H DY    +TY++F+N ELILFS  DN+RSI   +DG
Sbjct:  398 MIMTDQDHDGSHIKGLLINFLHHFWPSLLHINGFLQQFITPIVKCTKGKTELSFYTIPEYQSWKEENEEGKGWRIKYYKGLGTSSAAEAKEYFSNLDTHELDFTW--DDRADDLIDMAFAKKRVEDRKLWLLGLEAGVHIDYKAAKITYDNFVNHELILFSHADNERSIAHFMDG 570          
BLAST of mRNA_E-siliculosus-1a_F_contig1257.1590.1 vs. uniprot
Match: K3X2K0_GLOUD (DNA topoisomerase 2 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X2K0_GLOUD)

HSP 1 Score: 263 bits (672), Expect = 2.970e-78
Identity = 122/176 (69.32%), Postives = 146/176 (82.95%), Query Frame = 0
Query:    1 MIMTDQDHDGSHIKGLLINFVHHYWPSLLKIDGFLQEFITPIVKVSKGRNELS-FYTVPEYTVWKEGHANGKGWNAKYYKGLGTSTAKEAKEYFAALDTHQLEFEWQDDDRDDDLIDMAFSKKRVEDRKEWLRGFKAGTHADYNVESVTYESFINKELILFSMEDNKRSIPCLVDG 175
            MIM DQDHDGSHIKGL+INF+HH+WPSLL+IDGF+QEFITPIVK +KG+N    FYT+PEY  W+E   NG+GW+ KYYKGLGTST +EAKEYF+ L THQ+ F + D D D D IDMAFSKKRVE+RK+WLRG++AGTH DY+V+ + Y  F+NKELILFSM DN RSIP +VDG
Sbjct:  603 MIMADQDHDGSHIKGLVINFIHHFWPSLLQIDGFIQEFITPIVKCTKGKNNSKVFYTIPEYNAWREVTNNGRGWSIKYYKGLGTSTTQEAKEYFSDLKTHQVGFTY-DGDEDGDAIDMAFSKKRVEERKDWLRGYQAGTHVDYDVDDMAYSEFVNKELILFSMADNMRSIPSVVDG 777          
BLAST of mRNA_E-siliculosus-1a_F_contig1257.1590.1 vs. uniprot
Match: A0A7S3XNX1_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XNX1_HETAK)

HSP 1 Score: 255 bits (651), Expect = 6.700e-78
Identity = 115/175 (65.71%), Postives = 147/175 (84.00%), Query Frame = 0
Query:    1 MIMTDQDHDGSHIKGLLINFVHHYWPSLLKIDGFLQEFITPIVKVSKGRNELSFYTVPEYTVWKEGHANGKGWNAKYYKGLGTSTAKEAKEYFAALDTHQLEFEWQDDDRDDDLIDMAFSKKRVEDRKEWLRGFKAGTHADYNVESVTYESFINKELILFSMEDNKRSIPCLVDG 175
            M+MTDQDHDGSHIKGLL+NF HH++PSLL++ GF+Q+FITPIVK +KG+   +F+T+PEY  WKE   +GKGW  KYYKGLGTS++KEAKEYF+ L+TH+L+FEWQD+  D DLIDMAFSKKRV DRK WL+ F+ GT  +Y  +++TYE+FINKEL+LFS+ DN RSIP ++DG
Sbjct:   67 MVMTDQDHDGSHIKGLLVNFFHHFFPSLLQLPGFMQQFITPIVKCTKGKRTETFFTIPEYQRWKEATNDGKGWTIKYYKGLGTSSSKEAKEYFSDLNTHRLDFEWQDEAIDGDLIDMAFSKKRVNDRKTWLKEFEQGTSINYGSDAMTYENFINKELVLFSLADNMRSIPHVMDG 241          
BLAST of mRNA_E-siliculosus-1a_F_contig1257.1590.1 vs. uniprot
Match: W7TC60_9STRA (DNA topoisomerase 2 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TC60_9STRA)

HSP 1 Score: 261 bits (668), Expect = 1.040e-77
Identity = 125/176 (71.02%), Postives = 146/176 (82.95%), Query Frame = 0
Query:    1 MIMTDQDHDGSHIKGLLINFVHHYWPSLLKIDGFLQEFITPIVKVSKGRNEL-SFYTVPEYTVWKEGHANGKGWNAKYYKGLGTSTAKEAKEYFAALDTHQLEFEWQDDDRDDDLIDMAFSKKRVEDRKEWLRGFKAGTHADYNVESVTYESFINKELILFSMEDNKRSIPCLVDG 175
            MIMTDQDHDGSHIKGLLIN +HH+WPSLLK+ GFLQEFITPIVKVSKG     +FYT+PEY  WKE      GW  KYYKGLGTSTA+EAKEYF+ L TH+++F W DD  D D+IDMAF+KKRVEDRKEWLRGF  GT+ DY VES++Y++F+N+ELILFSM DN+RSIP L+DG
Sbjct:  547 MIMTDQDHDGSHIKGLLINLLHHFWPSLLKLPGFLQEFITPIVKVSKGSKRADAFYTIPEYEQWKERTNEAAGWTIKYYKGLGTSTAQEAKEYFSDLSTHRIDFCWADDG-DGDVIDMAFAKKRVEDRKEWLRGFSKGTYVDYKVESMSYDTFVNQELILFSMADNQRSIPHLMDG 721          
BLAST of mRNA_E-siliculosus-1a_F_contig1257.1590.1 vs. uniprot
Match: A0A812VSA4_9DINO (Top2 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812VSA4_9DINO)

HSP 1 Score: 244 bits (624), Expect = 2.320e-76
Identity = 113/175 (64.57%), Postives = 141/175 (80.57%), Query Frame = 0
Query:    1 MIMTDQDHDGSHIKGLLINFVHHYWPSLLKIDGFLQEFITPIVKVSKGRNELSFYTVPEYTVWKEGHANGKGWNAKYYKGLGTSTAKEAKEYFAALDTHQLEFEWQDDDRDDDLIDMAFSKKRVEDRKEWLRGFKAGTHADYNVESVTYESFINKELILFSMEDNKRSIPCLVDG 175
            MIM DQDHDGSHIKGL+INF+HH+WPSLLK+ GFL+EFITPIVK +KG   +SF+T+PEY  W E +  GKGW  KYYKGLGTST+ EAKEYF+ L+TH ++F + +D+ DD LID+AFSK+R +DRK WL+ ++ GTH DY++E + Y  F+NKELILFSM DN RSIP  VDG
Sbjct:   33 MIMADQDHDGSHIKGLVINFLHHFWPSLLKLPGFLKEFITPIVKCTKGPRVVSFFTMPEYQRWLEMNNYGKGWRIKYYKGLGTSTSAEAKEYFSNLETHMIDFCY-NDESDDQLIDLAFSKRRADDRKRWLQEYRPGTHIDYSIEKMYYSEFVNKELILFSMADNLRSIPSAVDG 206          
BLAST of mRNA_E-siliculosus-1a_F_contig1257.1590.1 vs. uniprot
Match: A0A024G308_9STRA (DNA topoisomerase 2 n=2 Tax=Albugo candida TaxID=65357 RepID=A0A024G308_9STRA)

HSP 1 Score: 257 bits (657), Expect = 3.040e-76
Identity = 118/175 (67.43%), Postives = 143/175 (81.71%), Query Frame = 0
Query:    1 MIMTDQDHDGSHIKGLLINFVHHYWPSLLKIDGFLQEFITPIVKVSKGRNELSFYTVPEYTVWKEGHANGKGWNAKYYKGLGTSTAKEAKEYFAALDTHQLEFEWQDDDRDDDLIDMAFSKKRVEDRKEWLRGFKAGTHADYNVESVTYESFINKELILFSMEDNKRSIPCLVDG 175
            MIM DQDHDGSHIKGL+INF+HH+WPSLL+I+GF+ EFITPIVK +KGR +  FYT+PEY  W+    NG+GW  KYYKGLGTST +EAKEYF+ L THQ++F ++ ++ D D IDMAFSKKRVE+RK+WLRG+  GTH DYNV+ + Y  F+NKELILFS  DN RSIPCLVDG
Sbjct:  575 MIMADQDHDGSHIKGLVINFIHHFWPSLLQIEGFMHEFITPIVKCAKGRMKKVFYTMPEYEAWRLVTNNGQGWRIKYYKGLGTSTTEEAKEYFSDLPTHQIDFSYKGEE-DGDSIDMAFSKKRVEERKDWLRGYTPGTHVDYNVDDMPYSEFVNKELILFSRADNMRSIPCLVDG 748          
BLAST of mRNA_E-siliculosus-1a_F_contig1257.1590.1 vs. uniprot
Match: A0A8K1CFH0_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CFH0_PYTOL)

HSP 1 Score: 257 bits (657), Expect = 3.180e-76
Identity = 121/175 (69.14%), Postives = 143/175 (81.71%), Query Frame = 0
Query:    1 MIMTDQDHDGSHIKGLLINFVHHYWPSLLKIDGFLQEFITPIVKVSKGRNELSFYTVPEYTVWKEGHANGKGWNAKYYKGLGTSTAKEAKEYFAALDTHQLEFEWQDDDRDDDLIDMAFSKKRVEDRKEWLRGFKAGTHADYNVESVTYESFINKELILFSMEDNKRSIPCLVDG 175
            MIMTDQDHDGSHIKGL+INF+HH+WPSLL+I+GFLQEFITPIVK SKG     FYT+PEY  W+E   NG+GW  KYYKGLGTS ++EAKEYF+ L THQ+ F + + D D DLIDMAFSKKRV+DRK+WLRG++ GTH DY+VE + Y  F+NKELILFS  DN RSIP +VDG
Sbjct:  626 MIMTDQDHDGSHIKGLVINFIHHFWPSLLQIEGFLQEFITPIVKCSKGSISKVFYTLPEYEAWREETNNGRGWKVKYYKGLGTSRSQEAKEYFSDLRTHQIGFVY-NSDADGDLIDMAFSKKRVDDRKDWLRGYENGTHVDYDVEEMPYTEFVNKELILFSRADNLRSIPSVVDG 799          
BLAST of mRNA_E-siliculosus-1a_F_contig1257.1590.1 vs. uniprot
Match: A0A0P1AKW0_PLAHL (DNA topoisomerase 2 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AKW0_PLAHL)

HSP 1 Score: 256 bits (653), Expect = 1.090e-75
Identity = 120/175 (68.57%), Postives = 142/175 (81.14%), Query Frame = 0
Query:    1 MIMTDQDHDGSHIKGLLINFVHHYWPSLLKIDGFLQEFITPIVKVSKGRNELSFYTVPEYTVWKEGHANGKGWNAKYYKGLGTSTAKEAKEYFAALDTHQLEFEWQDDDRDDDLIDMAFSKKRVEDRKEWLRGFKAGTHADYNVESVTYESFINKELILFSMEDNKRSIPCLVDG 175
            MIMTDQDHDGSHIKGL+IN +HH+WPSLL +DGFLQEFITPIVK +KGR +  FYT+PEY  W+E    G+GW  KYYKGLGTSTA E KEYF+ L THQ+ F + D D D D+IDMAFSKKRVEDRK+WLRG++ GTH DY+V+ + Y  F+NKELILFSM DN RSIP ++DG
Sbjct:  637 MIMTDQDHDGSHIKGLVINLIHHFWPSLLHVDGFLQEFITPIVKCTKGRMKEVFYTMPEYDAWRERTNQGRGWMIKYYKGLGTSTAAETKEYFSDLPTHQIGFTY-DGDGDADVIDMAFSKKRVEDRKDWLRGYEPGTHVDYDVDEMGYTEFVNKELILFSMADNIRSIPSVMDG 810          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1257.1590.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KFS2_9PHAE7.220e-11499.43DNA topoisomerase 2 n=2 Tax=Ectocarpus TaxID=2879 ... [more]
A0A835YRC0_9STRA1.660e-8168.57DNA topoisomerase 2 n=1 Tax=Tribonema minus TaxID=... [more]
A0A482RTD7_9ARCH1.240e-8070.86DNA topoisomerase (ATP-hydrolyzing) (Fragment) n=1... [more]
K3X2K0_GLOUD2.970e-7869.32DNA topoisomerase 2 n=1 Tax=Globisporangium ultimu... [more]
A0A7S3XNX1_HETAK6.700e-7865.71Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
W7TC60_9STRA1.040e-7771.02DNA topoisomerase 2 n=2 Tax=Monodopsidaceae TaxID=... [more]
A0A812VSA4_9DINO2.320e-7664.57Top2 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=23... [more]
A0A024G308_9STRA3.040e-7667.43DNA topoisomerase 2 n=2 Tax=Albugo candida TaxID=6... [more]
A0A8K1CFH0_PYTOL3.180e-7669.14Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A0P1AKW0_PLAHL1.090e-7568.57DNA topoisomerase 2 n=1 Tax=Plasmopara halstedii T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001154DNA topoisomerase II, eukaryotic-typePRINTSPR01158TOPISMRASEIIcoord: 34..45
score: 76.72
coord: 13..28
score: 74.57
coord: 81..93
score: 79.84
IPR031660C-terminal associated domain of TOPRIMPFAMPF16898TOPRIM_Ccoord: 38..165
e-value: 4.4E-51
score: 172.5
IPR013759DNA topoisomerase, type IIA, subunit B, C-terminalGENE3D3.40.50.670coord: 75..168
e-value: 1.4E-29
score: 105.1
IPR013759DNA topoisomerase, type IIA, subunit B, C-terminalGENE3D3.40.50.670coord: 1..74
e-value: 2.1E-20
score: 75.0
NoneNo IPR availablePANTHERPTHR10169DNA TOPOISOMERASE/GYRASEcoord: 1..175
IPR013760DNA topoisomerase, type IIA-like domain superfamilySUPERFAMILY56719Type II DNA topoisomerasecoord: 1..175

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1257contigE-siliculosus-1a_F_contig1257:31053..33993 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1257.1590.1mRNA_E-siliculosus-1a_F_contig1257.1590.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig1257 31023..33993 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig1257.1590.1 ID=prot_E-siliculosus-1a_F_contig1257.1590.1|Name=mRNA_E-siliculosus-1a_F_contig1257.1590.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=175bp
MIMTDQDHDGSHIKGLLINFVHHYWPSLLKIDGFLQEFITPIVKVSKGRN
ELSFYTVPEYTVWKEGHANGKGWNAKYYKGLGTSTAKEAKEYFAALDTHQ
LEFEWQDDDRDDDLIDMAFSKKRVEDRKEWLRGFKAGTHADYNVESVTYE
SFINKELILFSMEDNKRSIPCLVDG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013760Topo_IIA-like_dom_sf
IPR013759Topo_IIA_B_C
IPR031660TOPRIM_C
IPR001154TopoII_euk