mRNA_E-siliculosus-1a_F_contig1257.1590.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1257.1590.1
Unique NamemRNA_E-siliculosus-1a_F_contig1257.1590.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1257.1590.1 vs. uniprot
Match: A0A6H5KFS2_9PHAE (DNA topoisomerase 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KFS2_9PHAE)

HSP 1 Score: 384 bits (987), Expect = 7.210e-121
Identity = 184/185 (99.46%), Postives = 184/185 (99.46%), Query Frame = 1
Query:    1 DTKQLRYGHLMIMTDQDHDGSHIKGLLINFVHHYWPSLLKIDGFLQEFITPIVKVSKGRNELSFYTVPEYTVWKEGHANGKGWNAKYYKGLGTSTAKEAKEYFAALDTHQLEFEWQDDDRDDDLIDMAFSKKRVEDRKEWLRGFKAGTHADYNVESVTYESFINKELILFSMEDNKRSIPCLVDG 555
            DTKQLRYGHLMIMTDQDHDGSHIKGLLINFVHHYWPSLLKIDGFLQEFITPIVKVSKGRNELSFYTVPEYTVWKEGHANGKGWNAKYYKGLGTSTAKEAKEYFAALDTHQLEFEWQDD RDDDLIDMAFSKKRVEDRKEWLRGFKAGTHADYNVESVTYESFINKELILFSMEDNKRSIPCLVDG
Sbjct:  466 DTKQLRYGHLMIMTDQDHDGSHIKGLLINFVHHYWPSLLKIDGFLQEFITPIVKVSKGRNELSFYTVPEYTVWKEGHANGKGWNAKYYKGLGTSTAKEAKEYFAALDTHQLEFEWQDDHRDDDLIDMAFSKKRVEDRKEWLRGFKAGTHADYNVESVTYESFINKELILFSMEDNKRSIPCLVDG 650          
BLAST of mRNA_E-siliculosus-1a_F_contig1257.1590.1 vs. uniprot
Match: A0A835YRC0_9STRA (DNA topoisomerase 2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRC0_9STRA)

HSP 1 Score: 285 bits (729), Expect = 1.040e-86
Identity = 127/185 (68.65%), Postives = 154/185 (83.24%), Query Frame = 1
Query:    1 DTKQLRYGHLMIMTDQDHDGSHIKGLLINFVHHYWPSLLKIDGFLQEFITPIVKVSKGRNELSFYTVPEYTVWKEGHANGKGWNAKYYKGLGTSTAKEAKEYFAALDTHQLEFEWQDDDRDDDLIDMAFSKKRVEDRKEWLRGFKAGTHADYNVESVTYESFINKELILFSMEDNKRSIPCLVDG 555
            D + LRYGHLMIMTDQDHDGSHIKGLLIN +H++WPSLL+++GFL EFITPIVK  +   ELSF+TVPEY  W+  HA  +GW+ KYYKGLGTSTAKEAKEYFA LD HQ+ FEW+DD  D D++D+ F+KKR EDRKEWLR F  GT  DY V+++TY++F N+ELILFS+EDNKRS+PC+VDG
Sbjct:  461 DARALRYGHLMIMTDQDHDGSHIKGLLINLLHYFWPSLLRVEGFLLEFITPIVKCVRAGRELSFFTVPEYETWRAAHAQQRGWSIKYYKGLGTSTAKEAKEYFAKLDQHQIPFEWRDDAADGDMVDLVFNKKRAEDRKEWLRNFVPGTFVDYGVDAMTYDAFFNRELILFSIEDNKRSLPCMVDG 645          
BLAST of mRNA_E-siliculosus-1a_F_contig1257.1590.1 vs. uniprot
Match: A0A482RTD7_9ARCH (DNA topoisomerase (ATP-hydrolyzing) (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RTD7_9ARCH)

HSP 1 Score: 281 bits (719), Expect = 1.490e-86
Identity = 132/185 (71.35%), Postives = 152/185 (82.16%), Query Frame = 1
Query:    1 DTKQLRYGHLMIMTDQDHDGSHIKGLLINFVHHYWPSLLKIDGFLQEFITPIVKVSKGRNELSFYTVPEYTVWKEGHANGKGWNAKYYKGLGTSTAKEAKEYFAALDTHQLEFEWQDDDRDDDLIDMAFSKKRVEDRKEWLRGFKAGTHADYNVESVTYESFINKELILFSMEDNKRSIPCLVDG 555
            DT  LRYGHLMIMTDQDHDGSHIKGLLINF+HH+WPSLL I+GFLQ+FITPIVK +KG+ ELSFYT+PEY  WKE +  GKGW  KYYKGLGTS+A EAKEYF+ LDTH+L+F W  DDR DDLIDMAF+KKRVEDRK WL G +AG H DY    +TY++F+N ELILFS  DN+RSI   +DG
Sbjct:  388 DTSSLRYGHLMIMTDQDHDGSHIKGLLINFLHHFWPSLLHINGFLQQFITPIVKCTKGKTELSFYTIPEYQSWKEENEEGKGWRIKYYKGLGTSSAAEAKEYFSNLDTHELDFTW--DDRADDLIDMAFAKKRVEDRKLWLLGLEAGVHIDYKAAKITYDNFVNHELILFSHADNERSIAHFMDG 570          
BLAST of mRNA_E-siliculosus-1a_F_contig1257.1590.1 vs. uniprot
Match: K3X2K0_GLOUD (DNA topoisomerase 2 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X2K0_GLOUD)

HSP 1 Score: 279 bits (714), Expect = 9.230e-84
Identity = 130/185 (70.27%), Postives = 154/185 (83.24%), Query Frame = 1
Query:    4 TKQLRYGHLMIMTDQDHDGSHIKGLLINFVHHYWPSLLKIDGFLQEFITPIVKVSKGRNELS-FYTVPEYTVWKEGHANGKGWNAKYYKGLGTSTAKEAKEYFAALDTHQLEFEWQDDDRDDDLIDMAFSKKRVEDRKEWLRGFKAGTHADYNVESVTYESFINKELILFSMEDNKRSIPCLVDG 555
            TK LRYGHLMIM DQDHDGSHIKGL+INF+HH+WPSLL+IDGF+QEFITPIVK +KG+N    FYT+PEY  W+E   NG+GW+ KYYKGLGTST +EAKEYF+ L THQ+ F + D D D D IDMAFSKKRVE+RK+WLRG++AGTH DY+V+ + Y  F+NKELILFSM DN RSIP +VDG
Sbjct:  594 TKSLRYGHLMIMADQDHDGSHIKGLVINFIHHFWPSLLQIDGFIQEFITPIVKCTKGKNNSKVFYTIPEYNAWREVTNNGRGWSIKYYKGLGTSTTQEAKEYFSDLKTHQVGFTY-DGDEDGDAIDMAFSKKRVEERKDWLRGYQAGTHVDYDVDDMAYSEFVNKELILFSMADNMRSIPSVVDG 777          
BLAST of mRNA_E-siliculosus-1a_F_contig1257.1590.1 vs. uniprot
Match: W7TC60_9STRA (DNA topoisomerase 2 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TC60_9STRA)

HSP 1 Score: 278 bits (710), Expect = 3.270e-83
Identity = 133/186 (71.51%), Postives = 154/186 (82.80%), Query Frame = 1
Query:    1 DTKQLRYGHLMIMTDQDHDGSHIKGLLINFVHHYWPSLLKIDGFLQEFITPIVKVSKGRNEL-SFYTVPEYTVWKEGHANGKGWNAKYYKGLGTSTAKEAKEYFAALDTHQLEFEWQDDDRDDDLIDMAFSKKRVEDRKEWLRGFKAGTHADYNVESVTYESFINKELILFSMEDNKRSIPCLVDG 555
            D K LRYGHLMIMTDQDHDGSHIKGLLIN +HH+WPSLLK+ GFLQEFITPIVKVSKG     +FYT+PEY  WKE      GW  KYYKGLGTSTA+EAKEYF+ L TH+++F W DD  D D+IDMAF+KKRVEDRKEWLRGF  GT+ DY VES++Y++F+N+ELILFSM DN+RSIP L+DG
Sbjct:  537 DAKSLRYGHLMIMTDQDHDGSHIKGLLINLLHHFWPSLLKLPGFLQEFITPIVKVSKGSKRADAFYTIPEYEQWKERTNEAAGWTIKYYKGLGTSTAQEAKEYFSDLSTHRIDFCWADDG-DGDVIDMAFAKKRVEDRKEWLRGFSKGTYVDYKVESMSYDTFVNQELILFSMADNQRSIPHLMDG 721          
BLAST of mRNA_E-siliculosus-1a_F_contig1257.1590.1 vs. uniprot
Match: A0A812VSA4_9DINO (Top2 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812VSA4_9DINO)

HSP 1 Score: 260 bits (664), Expect = 3.410e-82
Identity = 121/184 (65.76%), Postives = 149/184 (80.98%), Query Frame = 1
Query:    4 TKQLRYGHLMIMTDQDHDGSHIKGLLINFVHHYWPSLLKIDGFLQEFITPIVKVSKGRNELSFYTVPEYTVWKEGHANGKGWNAKYYKGLGTSTAKEAKEYFAALDTHQLEFEWQDDDRDDDLIDMAFSKKRVEDRKEWLRGFKAGTHADYNVESVTYESFINKELILFSMEDNKRSIPCLVDG 555
            TK LRYGHLMIM DQDHDGSHIKGL+INF+HH+WPSLLK+ GFL+EFITPIVK +KG   +SF+T+PEY  W E +  GKGW  KYYKGLGTST+ EAKEYF+ L+TH ++F + +D+ DD LID+AFSK+R +DRK WL+ ++ GTH DY++E + Y  F+NKELILFSM DN RSIP  VDG
Sbjct:   24 TKGLRYGHLMIMADQDHDGSHIKGLVINFLHHFWPSLLKLPGFLKEFITPIVKCTKGPRVVSFFTMPEYQRWLEMNNYGKGWRIKYYKGLGTSTSAEAKEYFSNLETHMIDFCY-NDESDDQLIDLAFSKRRADDRKRWLQEYRPGTHIDYSIEKMYYSEFVNKELILFSMADNLRSIPSAVDG 206          
BLAST of mRNA_E-siliculosus-1a_F_contig1257.1590.1 vs. uniprot
Match: A0A024G308_9STRA (DNA topoisomerase 2 n=2 Tax=Albugo candida TaxID=65357 RepID=A0A024G308_9STRA)

HSP 1 Score: 273 bits (699), Expect = 9.260e-82
Identity = 126/184 (68.48%), Postives = 151/184 (82.07%), Query Frame = 1
Query:    4 TKQLRYGHLMIMTDQDHDGSHIKGLLINFVHHYWPSLLKIDGFLQEFITPIVKVSKGRNELSFYTVPEYTVWKEGHANGKGWNAKYYKGLGTSTAKEAKEYFAALDTHQLEFEWQDDDRDDDLIDMAFSKKRVEDRKEWLRGFKAGTHADYNVESVTYESFINKELILFSMEDNKRSIPCLVDG 555
            TK LRYGHLMIM DQDHDGSHIKGL+INF+HH+WPSLL+I+GF+ EFITPIVK +KGR +  FYT+PEY  W+    NG+GW  KYYKGLGTST +EAKEYF+ L THQ++F ++ ++ D D IDMAFSKKRVE+RK+WLRG+  GTH DYNV+ + Y  F+NKELILFS  DN RSIPCLVDG
Sbjct:  566 TKSLRYGHLMIMADQDHDGSHIKGLVINFIHHFWPSLLQIEGFMHEFITPIVKCAKGRMKKVFYTMPEYEAWRLVTNNGQGWRIKYYKGLGTSTTEEAKEYFSDLPTHQIDFSYKGEE-DGDSIDMAFSKKRVEERKDWLRGYTPGTHVDYNVDDMPYSEFVNKELILFSRADNMRSIPCLVDG 748          
BLAST of mRNA_E-siliculosus-1a_F_contig1257.1590.1 vs. uniprot
Match: A0A8K1CFH0_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CFH0_PYTOL)

HSP 1 Score: 273 bits (697), Expect = 1.900e-81
Identity = 129/184 (70.11%), Postives = 151/184 (82.07%), Query Frame = 1
Query:    4 TKQLRYGHLMIMTDQDHDGSHIKGLLINFVHHYWPSLLKIDGFLQEFITPIVKVSKGRNELSFYTVPEYTVWKEGHANGKGWNAKYYKGLGTSTAKEAKEYFAALDTHQLEFEWQDDDRDDDLIDMAFSKKRVEDRKEWLRGFKAGTHADYNVESVTYESFINKELILFSMEDNKRSIPCLVDG 555
            TK LRYGHLMIMTDQDHDGSHIKGL+INF+HH+WPSLL+I+GFLQEFITPIVK SKG     FYT+PEY  W+E   NG+GW  KYYKGLGTS ++EAKEYF+ L THQ+ F + + D D DLIDMAFSKKRV+DRK+WLRG++ GTH DY+VE + Y  F+NKELILFS  DN RSIP +VDG
Sbjct:  617 TKGLRYGHLMIMTDQDHDGSHIKGLVINFIHHFWPSLLQIEGFLQEFITPIVKCSKGSISKVFYTLPEYEAWREETNNGRGWKVKYYKGLGTSRSQEAKEYFSDLRTHQIGFVY-NSDADGDLIDMAFSKKRVDDRKDWLRGYENGTHVDYDVEEMPYTEFVNKELILFSRADNLRSIPSVVDG 799          
BLAST of mRNA_E-siliculosus-1a_F_contig1257.1590.1 vs. uniprot
Match: A0A7S3XNX1_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XNX1_HETAK)

HSP 1 Score: 263 bits (673), Expect = 5.840e-81
Identity = 119/182 (65.38%), Postives = 153/182 (84.07%), Query Frame = 1
Query:   10 QLRYGHLMIMTDQDHDGSHIKGLLINFVHHYWPSLLKIDGFLQEFITPIVKVSKGRNELSFYTVPEYTVWKEGHANGKGWNAKYYKGLGTSTAKEAKEYFAALDTHQLEFEWQDDDRDDDLIDMAFSKKRVEDRKEWLRGFKAGTHADYNVESVTYESFINKELILFSMEDNKRSIPCLVDG 555
            +LRYG +M+MTDQDHDGSHIKGLL+NF HH++PSLL++ GF+Q+FITPIVK +KG+   +F+T+PEY  WKE   +GKGW  KYYKGLGTS++KEAKEYF+ L+TH+L+FEWQD+  D DLIDMAFSKKRV DRK WL+ F+ GT  +Y  +++TYE+FINKEL+LFS+ DN RSIP ++DG
Sbjct:   60 KLRYGRVMVMTDQDHDGSHIKGLLVNFFHHFFPSLLQLPGFMQQFITPIVKCTKGKRTETFFTIPEYQRWKEATNDGKGWTIKYYKGLGTSSSKEAKEYFSDLNTHRLDFEWQDEAIDGDLIDMAFSKKRVNDRKTWLKEFEQGTSINYGSDAMTYENFINKELVLFSLADNMRSIPHVMDG 241          
BLAST of mRNA_E-siliculosus-1a_F_contig1257.1590.1 vs. uniprot
Match: A0A0P1AKW0_PLAHL (DNA topoisomerase 2 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AKW0_PLAHL)

HSP 1 Score: 271 bits (693), Expect = 6.540e-81
Identity = 128/184 (69.57%), Postives = 150/184 (81.52%), Query Frame = 1
Query:    4 TKQLRYGHLMIMTDQDHDGSHIKGLLINFVHHYWPSLLKIDGFLQEFITPIVKVSKGRNELSFYTVPEYTVWKEGHANGKGWNAKYYKGLGTSTAKEAKEYFAALDTHQLEFEWQDDDRDDDLIDMAFSKKRVEDRKEWLRGFKAGTHADYNVESVTYESFINKELILFSMEDNKRSIPCLVDG 555
            TK LRYGHLMIMTDQDHDGSHIKGL+IN +HH+WPSLL +DGFLQEFITPIVK +KGR +  FYT+PEY  W+E    G+GW  KYYKGLGTSTA E KEYF+ L THQ+ F + D D D D+IDMAFSKKRVEDRK+WLRG++ GTH DY+V+ + Y  F+NKELILFSM DN RSIP ++DG
Sbjct:  628 TKGLRYGHLMIMTDQDHDGSHIKGLVINLIHHFWPSLLHVDGFLQEFITPIVKCTKGRMKEVFYTMPEYDAWRERTNQGRGWMIKYYKGLGTSTAAETKEYFSDLPTHQIGFTY-DGDGDADVIDMAFSKKRVEDRKDWLRGYEPGTHVDYDVDEMGYTEFVNKELILFSMADNIRSIPSVMDG 810          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1257.1590.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KFS2_9PHAE7.210e-12199.46DNA topoisomerase 2 n=2 Tax=Ectocarpus TaxID=2879 ... [more]
A0A835YRC0_9STRA1.040e-8668.65DNA topoisomerase 2 n=1 Tax=Tribonema minus TaxID=... [more]
A0A482RTD7_9ARCH1.490e-8671.35DNA topoisomerase (ATP-hydrolyzing) (Fragment) n=1... [more]
K3X2K0_GLOUD9.230e-8470.27DNA topoisomerase 2 n=1 Tax=Globisporangium ultimu... [more]
W7TC60_9STRA3.270e-8371.51DNA topoisomerase 2 n=2 Tax=Monodopsidaceae TaxID=... [more]
A0A812VSA4_9DINO3.410e-8265.76Top2 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=23... [more]
A0A024G308_9STRA9.260e-8268.48DNA topoisomerase 2 n=2 Tax=Albugo candida TaxID=6... [more]
A0A8K1CFH0_PYTOL1.900e-8170.11Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S3XNX1_HETAK5.840e-8165.38Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A0P1AKW0_PLAHL6.540e-8169.57DNA topoisomerase 2 n=1 Tax=Plasmopara halstedii T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1257contigE-siliculosus-1a_F_contig1257:31023..33993 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size525
Model size556
Exons6
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko01000,ko03032,ko03036
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.L
EC5.99.1.3
EggNOG OGsCOG0187@1,KOG0355@2759
EggNOG free text desc.DNA topoisomerase type II (ATP-hydrolyzing) activity
KEGG Pathwayko01524,map01524
KEGG koko:K03164
Preferred nameTOP2
Seed eggNOG ortholog2880.D7G0Y6
Seed ortholog evalue4.2e-100
Seed ortholog score370.5
Taxonomic scopeEukaryota
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927779.13291-UTR-E-siliculosus-1a_F_contig1257:31022..310521622927779.13291-UTR-E-siliculosus-1a_F_contig1257:31022..31052Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1257 31023..31052 +
1696318676.5914643-UTR-E-siliculosus-1a_F_contig1257:31022..310521696318676.5914643-UTR-E-siliculosus-1a_F_contig1257:31022..31052Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1257 31023..31052 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927779.148511-CDS-E-siliculosus-1a_F_contig1257:31052..310951622927779.148511-CDS-E-siliculosus-1a_F_contig1257:31052..31095Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1257 31053..31095 +
1696318676.6063626-CDS-E-siliculosus-1a_F_contig1257:31052..310951696318676.6063626-CDS-E-siliculosus-1a_F_contig1257:31052..31095Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1257 31053..31095 +
1622927779.160692-CDS-E-siliculosus-1a_F_contig1257:31469..315681622927779.160692-CDS-E-siliculosus-1a_F_contig1257:31469..31568Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1257 31470..31568 +
1696318676.6142654-CDS-E-siliculosus-1a_F_contig1257:31469..315681696318676.6142654-CDS-E-siliculosus-1a_F_contig1257:31469..31568Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1257 31470..31568 +
1622927779.2928684-CDS-E-siliculosus-1a_F_contig1257:32171..322661622927779.2928684-CDS-E-siliculosus-1a_F_contig1257:32171..32266Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1257 32172..32266 +
1696318676.6218367-CDS-E-siliculosus-1a_F_contig1257:32171..322661696318676.6218367-CDS-E-siliculosus-1a_F_contig1257:32171..32266Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1257 32172..32266 +
1622927779.3592281-CDS-E-siliculosus-1a_F_contig1257:32885..330181622927779.3592281-CDS-E-siliculosus-1a_F_contig1257:32885..33018Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1257 32886..33018 +
1696318676.6297262-CDS-E-siliculosus-1a_F_contig1257:32885..330181696318676.6297262-CDS-E-siliculosus-1a_F_contig1257:32885..33018Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1257 32886..33018 +
1622927779.3769927-CDS-E-siliculosus-1a_F_contig1257:33432..335451622927779.3769927-CDS-E-siliculosus-1a_F_contig1257:33432..33545Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1257 33433..33545 +
1696318676.6372833-CDS-E-siliculosus-1a_F_contig1257:33432..335451696318676.6372833-CDS-E-siliculosus-1a_F_contig1257:33432..33545Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1257 33433..33545 +
1622927779.403539-CDS-E-siliculosus-1a_F_contig1257:33951..339931622927779.403539-CDS-E-siliculosus-1a_F_contig1257:33951..33993Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1257 33952..33993 +
1696318676.6448326-CDS-E-siliculosus-1a_F_contig1257:33951..339931696318676.6448326-CDS-E-siliculosus-1a_F_contig1257:33951..33993Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1257 33952..33993 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1257.1590.1prot_E-siliculosus-1a_F_contig1257.1590.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1257 31053..33993 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1257.1590.1

>prot_E-siliculosus-1a_F_contig1257.1590.1 ID=prot_E-siliculosus-1a_F_contig1257.1590.1|Name=mRNA_E-siliculosus-1a_F_contig1257.1590.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=175bp
MIMTDQDHDGSHIKGLLINFVHHYWPSLLKIDGFLQEFITPIVKVSKGRN
ELSFYTVPEYTVWKEGHANGKGWNAKYYKGLGTSTAKEAKEYFAALDTHQ
LEFEWQDDDRDDDLIDMAFSKKRVEDRKEWLRGFKAGTHADYNVESVTYE
SFINKELILFSMEDNKRSIPCLVDG
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mRNA from alignment at E-siliculosus-1a_F_contig1257:31023..33993+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1257.1590.1 ID=mRNA_E-siliculosus-1a_F_contig1257.1590.1|Name=mRNA_E-siliculosus-1a_F_contig1257.1590.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2971bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1257:31023..33993+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GACACAAAGCAGCTGCGCTACGGCCACCTGATGATCATGACCGATCAGGA TCACGACGGGAGCCACATCAAGGGTAGGCGTGTTTGCCTCCACCGTGTTG CAGTTAGGTTGATTGGGGGGCTGGTCTCACGCTACCCACCGACTACCTAC TGCCCTGTAGACTCCTCAGCCATTTGATGCTTTGCTATTTCGTAACGTGG ACCCTTTTCGAACCAGCGGATGCCCGTTAGTCCTGTGGAAGCACAGAGTC GAAGCTAGCTAGCTATTGGCGCCAAGAACAGCAGCAACCGCACCAGCAAC AACCGCACTACTGTTTTGTGTTGTGACTAATCGATTTGTGTGTTGCAAAC AGCGATGATGGGACCGTCGATTAGCGCCAGCGGCGTCAACAACATCAACA AGCACGTTGTTAATCGTCACTGCTCTCGAACCCCCTGGTTTTTTCAGGAC TGCTGATCAACTTCGTGCACCACTACTGGCCGTCCCTGCTGAAGATCGAC GGCTTCCTGCAGGAGTTCATCACCCCGATCGTCAAGGTCTCCAAGGGTAC GAGACCGGTTGTAGCATACGCGTGCTAAAACCTGCTAACACGAACTTCTT GTGTCTTCCACCCTTCAACAAACATGCATATGTACGAACCATCAGAGCCG TCATAAGACGAACCAAAAACACAACAGCAGGAACAACATCAAACGAAACA GTCCGTTGTTGTTGTTCTGAAACAAGTGTGTTCGCATGACATGGTGCGTC GTTTTCCTGTTTGGCATCGCAAAACGTTTGTTCGCATGATGTAGCGCCTC GTTGTCCCTTCTTATCGCCCATTCTGCGCCATGCCATGGGAAAAAACCGC TGTAATTCCTTCCGGCCGTGGGTTTGATGGGAGCTTTTGGAACGGCACTA GACTGCCGGATCGTGTACCAGGAATCTTGTTTCGAAAACCTTGTGCGCCT CCCCCTTTTTTTTTATTGGTTAAGTCACACAGCGAATGGCGACCCGTATG TCCACCGCTGCGTCAACTCATCCCCTCCGTTGTTGGTGTCAGGAATCTTG TCTCGAAATCCTTGTGCGCCTCCAGTTTTTTTTTTTGTCCATCGCTGCGT CAACTCGTCCCCTCCGTTGCTGGTGTGAATGCGGTGTCGTGGCACCCAGG CCGAAACGAGCTGTCGTTCTACACGGTCCCGGAGTACACGGTATGGAAGG AAGGACATGCCAACGGCAAGGGGTGGAATGCCAAGTATTACAAGGTATTA TTTTTTTTCTACATTGCTAATCTTTCAGGACTCCAGGATGCAGAGAACCG TTTCAACAATAGACGACAGATCCACGCGAGATGTTACACGTTCCCCCGCA CAACACCACGCCCACACAATGTGGTACTTGGTGGCGATCCAGATACCGGC CAACCTGAGAACGCAACACGTATATCCACTTCGAGATCAAGTGTCATGAT GGATCCCCCCTCAACTATCATCCCCATTGTGATGTTTTTCAAGCCCAAAA ACATTTCACGTGACACTTTCTCCAGGGCTTGTTGCCTTCTTGTCTCCTCG TCGATCGCATGCCCAACTGCTACCTCTGCTGTTGCTGGTGCTCTATTCCA TGCACTGGCGGTCGGGCGTGCATGCACGATGCAGTGCGGCGGTGCAGGCA TCTATCTCAGCGGCAAGGGACGACACGGATGAGTGTCCCGACAAGTTGGT ACTCAATCCGGAATTATCTCACACAACACCTAGGTGTACATGGGACAAGC CAGATCGACAGCCTGACCCAATAATCTCGGTGCCTTCTATCCCCAACCGT TGCTGTGGTGCCTTCTATCCCTAACCGTTGCTGTGGTGCCGTGCGTGTGT GGTGGGCGCGTAGGGTCTGGGTACCTCCACCGCCAAGGAGGCCAAGGAGT ACTTCGCGGCGCTGGACACTCACCAGCTGGAGTTCGAGTGGCAGGACGAC GACAGGGACGACGACCTCATCGACATGGCCTTCAGCAAGAAGCGAGGTGT GTGCACAGCAGCTCTTCTTTCTTGAAGGAGGAAACAGAGCACAATGATAC CTGTCCATGGATACAAAATCCTGTATAAAGTTCCCGCTGTGGCAAATAGT TCGTGATGTCGTAAGACGCACCCCCGTGGGTTACAGGCTGAAGACCGAAA GCGGAAGGTGTTGCGTGTGTGTGGATGAGCTGATGTGTCCACAGTCTTCC CTCAACATTAGCGTTTTCTAGGTTGAGCATGACCATTTGGCCGATTCGTT TTGGTACCCAGCGAGGTCTGTGTTCCCGATGTGCTACTGGTGTGCTGTTG GTGTTGTTGCCGCCGTGCCGTGGCTCTGATACTCCAAAGCTTTTTTGGAA TATTTTCTTAAATGCTTGTGTGCCGCTGGTGCTGCTGTTGATGGCTGTCG TCTCTCTCAGTGGAGGACCGGAAGGAGTGGCTCCGCGGATTCAAGGCCGG CACCCACGCGGACTACAACGTTGAGTCGGTCACCTACGAGAGCTTCATCA ACAAGGAGCTCATACTCTTCTCGGTGAGGGGGCCCCGCAATATCGCGTGC GACGCCTGTTGCTGCACTTGTAACTACCGTCCCTTCTTGCGCACTAGACG CGCGTCGCCAAGGGTGATTTATTTTGTAGCGGTCGTTGTTGTCCGTTATT TTGATGGTACCGCGCATTTTCCTCGATTTTCGAGTTCGCCTGCTTTGTCT GTCTGATCTGTGGTGCTCTGCTGCTCACAATTCGATGCTTCCGATATTCT GGTTTTTTTCTTTAATTAGCCCTCATCATTTTCCATTGGTGCTAACGAAT GATGATAGTATTCATTCCGTGTTTATTCATTTGTTTGGTTTCGCACATCT TGTTCTGTTCTACGTGTTTGGCGGGTTGTTGCTCATTACCACTGCCTCCC GTTTCCCTGTCTGATCGGACCCTAATCAGATGGAGGACAACAAGCGGTCT ATCCCCTGCCTGGTGGACGGT
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1257:31023..33993+

>mRNA_E-siliculosus-1a_F_contig1257.1590.1 ID=mRNA_E-siliculosus-1a_F_contig1257.1590.1|Name=mRNA_E-siliculosus-1a_F_contig1257.1590.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1050bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1257:31023..33993+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGATCATGACCGATCAGGATCACGACGGGAGCCACATCAAGGATGATCA
TGACCGATCAGGATCACGACGGGAGCCACATCAAGGGACTGCTGATCAAC
TTCGTGCACCACTACTGGCCGTCCCTGCTGAAGATCGACGGCTTCCTGCA
GGAGTTCATCACCCCGATCGTCAAGGTCTCCAAGGGACTGCTGATCAACT
TCGTGCACCACTACTGGCCGTCCCTGCTGAAGATCGACGGCTTCCTGCAG
GAGTTCATCACCCCGATCGTCAAGGTCTCCAAGGGCCGAAACGAGCTGTC
GTTCTACACGGTCCCGGAGTACACGGTATGGAAGGAAGGACATGCCAACG
GCAAGGGGTGGAATGCCAAGTATTACAAGGCCGAAACGAGCTGTCGTTCT
ACACGGTCCCGGAGTACACGGTATGGAAGGAAGGACATGCCAACGGCAAG
GGGTGGAATGCCAAGTATTACAAGGGTCTGGGTACCTCCACCGCCAAGGA
GGCCAAGGAGTACTTCGCGGCGCTGGACACTCACCAGCTGGAGTTCGAGT
GGCAGGACGACGACAGGGACGACGACCTCATCGACATGGCCTTCAGCAAG
AAGCGAGGGTCTGGGTACCTCCACCGCCAAGGAGGCCAAGGAGTACTTCG
CGGCGCTGGACACTCACCAGCTGGAGTTCGAGTGGCAGGACGACGACAGG
GACGACGACCTCATCGACATGGCCTTCAGCAAGAAGCGAGTGGAGGACCG
GAAGGAGTGGCTCCGCGGATTCAAGGCCGGCACCCACGCGGACTACAACG
TTGAGTCGGTCACCTACGAGAGCTTCATCAACAAGGAGCTCATACTCTTC
TCGTGGAGGACCGGAAGGAGTGGCTCCGCGGATTCAAGGCCGGCACCCAC
GCGGACTACAACGTTGAGTCGGTCACCTACGAGAGCTTCATCAACAAGGA
GCTCATACTCTTCTCGATGGAGGACAACAAGCGGTCTATCCCCTGCCTGG
TGGACGGTATGGAGGACAACAAGCGGTCTATCCCCTGCCTGGTGGACGGT
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