mRNA_E-siliculosus-1a_F_contig1257.1590.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1257.1590.1 vs. uniprot
Match: A0A6H5KFS2_9PHAE (DNA topoisomerase 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KFS2_9PHAE) HSP 1 Score: 384 bits (987), Expect = 7.210e-121 Identity = 184/185 (99.46%), Postives = 184/185 (99.46%), Query Frame = 1
Query: 1 DTKQLRYGHLMIMTDQDHDGSHIKGLLINFVHHYWPSLLKIDGFLQEFITPIVKVSKGRNELSFYTVPEYTVWKEGHANGKGWNAKYYKGLGTSTAKEAKEYFAALDTHQLEFEWQDDDRDDDLIDMAFSKKRVEDRKEWLRGFKAGTHADYNVESVTYESFINKELILFSMEDNKRSIPCLVDG 555
DTKQLRYGHLMIMTDQDHDGSHIKGLLINFVHHYWPSLLKIDGFLQEFITPIVKVSKGRNELSFYTVPEYTVWKEGHANGKGWNAKYYKGLGTSTAKEAKEYFAALDTHQLEFEWQDD RDDDLIDMAFSKKRVEDRKEWLRGFKAGTHADYNVESVTYESFINKELILFSMEDNKRSIPCLVDG
Sbjct: 466 DTKQLRYGHLMIMTDQDHDGSHIKGLLINFVHHYWPSLLKIDGFLQEFITPIVKVSKGRNELSFYTVPEYTVWKEGHANGKGWNAKYYKGLGTSTAKEAKEYFAALDTHQLEFEWQDDHRDDDLIDMAFSKKRVEDRKEWLRGFKAGTHADYNVESVTYESFINKELILFSMEDNKRSIPCLVDG 650
BLAST of mRNA_E-siliculosus-1a_F_contig1257.1590.1 vs. uniprot
Match: A0A835YRC0_9STRA (DNA topoisomerase 2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRC0_9STRA) HSP 1 Score: 285 bits (729), Expect = 1.040e-86 Identity = 127/185 (68.65%), Postives = 154/185 (83.24%), Query Frame = 1
Query: 1 DTKQLRYGHLMIMTDQDHDGSHIKGLLINFVHHYWPSLLKIDGFLQEFITPIVKVSKGRNELSFYTVPEYTVWKEGHANGKGWNAKYYKGLGTSTAKEAKEYFAALDTHQLEFEWQDDDRDDDLIDMAFSKKRVEDRKEWLRGFKAGTHADYNVESVTYESFINKELILFSMEDNKRSIPCLVDG 555
D + LRYGHLMIMTDQDHDGSHIKGLLIN +H++WPSLL+++GFL EFITPIVK + ELSF+TVPEY W+ HA +GW+ KYYKGLGTSTAKEAKEYFA LD HQ+ FEW+DD D D++D+ F+KKR EDRKEWLR F GT DY V+++TY++F N+ELILFS+EDNKRS+PC+VDG
Sbjct: 461 DARALRYGHLMIMTDQDHDGSHIKGLLINLLHYFWPSLLRVEGFLLEFITPIVKCVRAGRELSFFTVPEYETWRAAHAQQRGWSIKYYKGLGTSTAKEAKEYFAKLDQHQIPFEWRDDAADGDMVDLVFNKKRAEDRKEWLRNFVPGTFVDYGVDAMTYDAFFNRELILFSIEDNKRSLPCMVDG 645
BLAST of mRNA_E-siliculosus-1a_F_contig1257.1590.1 vs. uniprot
Match: A0A482RTD7_9ARCH (DNA topoisomerase (ATP-hydrolyzing) (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RTD7_9ARCH) HSP 1 Score: 281 bits (719), Expect = 1.490e-86 Identity = 132/185 (71.35%), Postives = 152/185 (82.16%), Query Frame = 1
Query: 1 DTKQLRYGHLMIMTDQDHDGSHIKGLLINFVHHYWPSLLKIDGFLQEFITPIVKVSKGRNELSFYTVPEYTVWKEGHANGKGWNAKYYKGLGTSTAKEAKEYFAALDTHQLEFEWQDDDRDDDLIDMAFSKKRVEDRKEWLRGFKAGTHADYNVESVTYESFINKELILFSMEDNKRSIPCLVDG 555
DT LRYGHLMIMTDQDHDGSHIKGLLINF+HH+WPSLL I+GFLQ+FITPIVK +KG+ ELSFYT+PEY WKE + GKGW KYYKGLGTS+A EAKEYF+ LDTH+L+F W DDR DDLIDMAF+KKRVEDRK WL G +AG H DY +TY++F+N ELILFS DN+RSI +DG
Sbjct: 388 DTSSLRYGHLMIMTDQDHDGSHIKGLLINFLHHFWPSLLHINGFLQQFITPIVKCTKGKTELSFYTIPEYQSWKEENEEGKGWRIKYYKGLGTSSAAEAKEYFSNLDTHELDFTW--DDRADDLIDMAFAKKRVEDRKLWLLGLEAGVHIDYKAAKITYDNFVNHELILFSHADNERSIAHFMDG 570
BLAST of mRNA_E-siliculosus-1a_F_contig1257.1590.1 vs. uniprot
Match: K3X2K0_GLOUD (DNA topoisomerase 2 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X2K0_GLOUD) HSP 1 Score: 279 bits (714), Expect = 9.230e-84 Identity = 130/185 (70.27%), Postives = 154/185 (83.24%), Query Frame = 1
Query: 4 TKQLRYGHLMIMTDQDHDGSHIKGLLINFVHHYWPSLLKIDGFLQEFITPIVKVSKGRNELS-FYTVPEYTVWKEGHANGKGWNAKYYKGLGTSTAKEAKEYFAALDTHQLEFEWQDDDRDDDLIDMAFSKKRVEDRKEWLRGFKAGTHADYNVESVTYESFINKELILFSMEDNKRSIPCLVDG 555
TK LRYGHLMIM DQDHDGSHIKGL+INF+HH+WPSLL+IDGF+QEFITPIVK +KG+N FYT+PEY W+E NG+GW+ KYYKGLGTST +EAKEYF+ L THQ+ F + D D D D IDMAFSKKRVE+RK+WLRG++AGTH DY+V+ + Y F+NKELILFSM DN RSIP +VDG
Sbjct: 594 TKSLRYGHLMIMADQDHDGSHIKGLVINFIHHFWPSLLQIDGFIQEFITPIVKCTKGKNNSKVFYTIPEYNAWREVTNNGRGWSIKYYKGLGTSTTQEAKEYFSDLKTHQVGFTY-DGDEDGDAIDMAFSKKRVEERKDWLRGYQAGTHVDYDVDDMAYSEFVNKELILFSMADNMRSIPSVVDG 777
BLAST of mRNA_E-siliculosus-1a_F_contig1257.1590.1 vs. uniprot
Match: W7TC60_9STRA (DNA topoisomerase 2 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TC60_9STRA) HSP 1 Score: 278 bits (710), Expect = 3.270e-83 Identity = 133/186 (71.51%), Postives = 154/186 (82.80%), Query Frame = 1
Query: 1 DTKQLRYGHLMIMTDQDHDGSHIKGLLINFVHHYWPSLLKIDGFLQEFITPIVKVSKGRNEL-SFYTVPEYTVWKEGHANGKGWNAKYYKGLGTSTAKEAKEYFAALDTHQLEFEWQDDDRDDDLIDMAFSKKRVEDRKEWLRGFKAGTHADYNVESVTYESFINKELILFSMEDNKRSIPCLVDG 555
D K LRYGHLMIMTDQDHDGSHIKGLLIN +HH+WPSLLK+ GFLQEFITPIVKVSKG +FYT+PEY WKE GW KYYKGLGTSTA+EAKEYF+ L TH+++F W DD D D+IDMAF+KKRVEDRKEWLRGF GT+ DY VES++Y++F+N+ELILFSM DN+RSIP L+DG
Sbjct: 537 DAKSLRYGHLMIMTDQDHDGSHIKGLLINLLHHFWPSLLKLPGFLQEFITPIVKVSKGSKRADAFYTIPEYEQWKERTNEAAGWTIKYYKGLGTSTAQEAKEYFSDLSTHRIDFCWADDG-DGDVIDMAFAKKRVEDRKEWLRGFSKGTYVDYKVESMSYDTFVNQELILFSMADNQRSIPHLMDG 721
BLAST of mRNA_E-siliculosus-1a_F_contig1257.1590.1 vs. uniprot
Match: A0A812VSA4_9DINO (Top2 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812VSA4_9DINO) HSP 1 Score: 260 bits (664), Expect = 3.410e-82 Identity = 121/184 (65.76%), Postives = 149/184 (80.98%), Query Frame = 1
Query: 4 TKQLRYGHLMIMTDQDHDGSHIKGLLINFVHHYWPSLLKIDGFLQEFITPIVKVSKGRNELSFYTVPEYTVWKEGHANGKGWNAKYYKGLGTSTAKEAKEYFAALDTHQLEFEWQDDDRDDDLIDMAFSKKRVEDRKEWLRGFKAGTHADYNVESVTYESFINKELILFSMEDNKRSIPCLVDG 555
TK LRYGHLMIM DQDHDGSHIKGL+INF+HH+WPSLLK+ GFL+EFITPIVK +KG +SF+T+PEY W E + GKGW KYYKGLGTST+ EAKEYF+ L+TH ++F + +D+ DD LID+AFSK+R +DRK WL+ ++ GTH DY++E + Y F+NKELILFSM DN RSIP VDG
Sbjct: 24 TKGLRYGHLMIMADQDHDGSHIKGLVINFLHHFWPSLLKLPGFLKEFITPIVKCTKGPRVVSFFTMPEYQRWLEMNNYGKGWRIKYYKGLGTSTSAEAKEYFSNLETHMIDFCY-NDESDDQLIDLAFSKRRADDRKRWLQEYRPGTHIDYSIEKMYYSEFVNKELILFSMADNLRSIPSAVDG 206
BLAST of mRNA_E-siliculosus-1a_F_contig1257.1590.1 vs. uniprot
Match: A0A024G308_9STRA (DNA topoisomerase 2 n=2 Tax=Albugo candida TaxID=65357 RepID=A0A024G308_9STRA) HSP 1 Score: 273 bits (699), Expect = 9.260e-82 Identity = 126/184 (68.48%), Postives = 151/184 (82.07%), Query Frame = 1
Query: 4 TKQLRYGHLMIMTDQDHDGSHIKGLLINFVHHYWPSLLKIDGFLQEFITPIVKVSKGRNELSFYTVPEYTVWKEGHANGKGWNAKYYKGLGTSTAKEAKEYFAALDTHQLEFEWQDDDRDDDLIDMAFSKKRVEDRKEWLRGFKAGTHADYNVESVTYESFINKELILFSMEDNKRSIPCLVDG 555
TK LRYGHLMIM DQDHDGSHIKGL+INF+HH+WPSLL+I+GF+ EFITPIVK +KGR + FYT+PEY W+ NG+GW KYYKGLGTST +EAKEYF+ L THQ++F ++ ++ D D IDMAFSKKRVE+RK+WLRG+ GTH DYNV+ + Y F+NKELILFS DN RSIPCLVDG
Sbjct: 566 TKSLRYGHLMIMADQDHDGSHIKGLVINFIHHFWPSLLQIEGFMHEFITPIVKCAKGRMKKVFYTMPEYEAWRLVTNNGQGWRIKYYKGLGTSTTEEAKEYFSDLPTHQIDFSYKGEE-DGDSIDMAFSKKRVEERKDWLRGYTPGTHVDYNVDDMPYSEFVNKELILFSRADNMRSIPCLVDG 748
BLAST of mRNA_E-siliculosus-1a_F_contig1257.1590.1 vs. uniprot
Match: A0A8K1CFH0_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CFH0_PYTOL) HSP 1 Score: 273 bits (697), Expect = 1.900e-81 Identity = 129/184 (70.11%), Postives = 151/184 (82.07%), Query Frame = 1
Query: 4 TKQLRYGHLMIMTDQDHDGSHIKGLLINFVHHYWPSLLKIDGFLQEFITPIVKVSKGRNELSFYTVPEYTVWKEGHANGKGWNAKYYKGLGTSTAKEAKEYFAALDTHQLEFEWQDDDRDDDLIDMAFSKKRVEDRKEWLRGFKAGTHADYNVESVTYESFINKELILFSMEDNKRSIPCLVDG 555
TK LRYGHLMIMTDQDHDGSHIKGL+INF+HH+WPSLL+I+GFLQEFITPIVK SKG FYT+PEY W+E NG+GW KYYKGLGTS ++EAKEYF+ L THQ+ F + + D D DLIDMAFSKKRV+DRK+WLRG++ GTH DY+VE + Y F+NKELILFS DN RSIP +VDG
Sbjct: 617 TKGLRYGHLMIMTDQDHDGSHIKGLVINFIHHFWPSLLQIEGFLQEFITPIVKCSKGSISKVFYTLPEYEAWREETNNGRGWKVKYYKGLGTSRSQEAKEYFSDLRTHQIGFVY-NSDADGDLIDMAFSKKRVDDRKDWLRGYENGTHVDYDVEEMPYTEFVNKELILFSRADNLRSIPSVVDG 799
BLAST of mRNA_E-siliculosus-1a_F_contig1257.1590.1 vs. uniprot
Match: A0A7S3XNX1_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XNX1_HETAK) HSP 1 Score: 263 bits (673), Expect = 5.840e-81 Identity = 119/182 (65.38%), Postives = 153/182 (84.07%), Query Frame = 1
Query: 10 QLRYGHLMIMTDQDHDGSHIKGLLINFVHHYWPSLLKIDGFLQEFITPIVKVSKGRNELSFYTVPEYTVWKEGHANGKGWNAKYYKGLGTSTAKEAKEYFAALDTHQLEFEWQDDDRDDDLIDMAFSKKRVEDRKEWLRGFKAGTHADYNVESVTYESFINKELILFSMEDNKRSIPCLVDG 555
+LRYG +M+MTDQDHDGSHIKGLL+NF HH++PSLL++ GF+Q+FITPIVK +KG+ +F+T+PEY WKE +GKGW KYYKGLGTS++KEAKEYF+ L+TH+L+FEWQD+ D DLIDMAFSKKRV DRK WL+ F+ GT +Y +++TYE+FINKEL+LFS+ DN RSIP ++DG
Sbjct: 60 KLRYGRVMVMTDQDHDGSHIKGLLVNFFHHFFPSLLQLPGFMQQFITPIVKCTKGKRTETFFTIPEYQRWKEATNDGKGWTIKYYKGLGTSSSKEAKEYFSDLNTHRLDFEWQDEAIDGDLIDMAFSKKRVNDRKTWLKEFEQGTSINYGSDAMTYENFINKELVLFSLADNMRSIPHVMDG 241
BLAST of mRNA_E-siliculosus-1a_F_contig1257.1590.1 vs. uniprot
Match: A0A0P1AKW0_PLAHL (DNA topoisomerase 2 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AKW0_PLAHL) HSP 1 Score: 271 bits (693), Expect = 6.540e-81 Identity = 128/184 (69.57%), Postives = 150/184 (81.52%), Query Frame = 1
Query: 4 TKQLRYGHLMIMTDQDHDGSHIKGLLINFVHHYWPSLLKIDGFLQEFITPIVKVSKGRNELSFYTVPEYTVWKEGHANGKGWNAKYYKGLGTSTAKEAKEYFAALDTHQLEFEWQDDDRDDDLIDMAFSKKRVEDRKEWLRGFKAGTHADYNVESVTYESFINKELILFSMEDNKRSIPCLVDG 555
TK LRYGHLMIMTDQDHDGSHIKGL+IN +HH+WPSLL +DGFLQEFITPIVK +KGR + FYT+PEY W+E G+GW KYYKGLGTSTA E KEYF+ L THQ+ F + D D D D+IDMAFSKKRVEDRK+WLRG++ GTH DY+V+ + Y F+NKELILFSM DN RSIP ++DG
Sbjct: 628 TKGLRYGHLMIMTDQDHDGSHIKGLVINLIHHFWPSLLHVDGFLQEFITPIVKCTKGRMKEVFYTMPEYDAWRERTNQGRGWMIKYYKGLGTSTAAETKEYFSDLPTHQIGFTY-DGDGDADVIDMAFSKKRVEDRKDWLRGYEPGTHVDYDVDEMGYTEFVNKELILFSMADNIRSIPSVMDG 810 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1257.1590.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1257.1590.1 >prot_E-siliculosus-1a_F_contig1257.1590.1 ID=prot_E-siliculosus-1a_F_contig1257.1590.1|Name=mRNA_E-siliculosus-1a_F_contig1257.1590.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=175bp MIMTDQDHDGSHIKGLLINFVHHYWPSLLKIDGFLQEFITPIVKVSKGRNback to top mRNA from alignment at E-siliculosus-1a_F_contig1257:31023..33993+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1257.1590.1 ID=mRNA_E-siliculosus-1a_F_contig1257.1590.1|Name=mRNA_E-siliculosus-1a_F_contig1257.1590.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2971bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1257:31023..33993+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1257:31023..33993+ >mRNA_E-siliculosus-1a_F_contig1257.1590.1 ID=mRNA_E-siliculosus-1a_F_contig1257.1590.1|Name=mRNA_E-siliculosus-1a_F_contig1257.1590.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1050bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1257:31023..33993+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |