prot_E-siliculosus-1a_F_contig1237.1478.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig1237.1478.1
Unique Nameprot_E-siliculosus-1a_F_contig1237.1478.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length178
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1237.1478.1 vs. uniprot
Match: A0A6H5K1C9_9PHAE (Ribosomal_L18A domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K1C9_9PHAE)

HSP 1 Score: 353 bits (905), Expect = 1.180e-122
Identity = 171/177 (96.61%), Postives = 175/177 (98.87%), Query Frame = 0
Query:    1 MVAMRQYQVVGRKAVTEKEPNPPVYRMKVFAPNEVTGASQFWYLMHQMRKMKKTTGEILDIVELTEKNARIIKNYGIWLRYDSRSGTHNMYREYRDLTLTGAVDQMYSEMAGRHRCRPRSIQIIRTGIVAAKDTKRPDVQQFHNANIKFPLTHRLPRAPKKKFRTTFKASRPTTFLG 177
            MV MRQYQVVGRKAVTEKEPNPPVYRMKVFAPNEVTGASQFWYLMHQMRKMKKTTGEILDIVELTEKN+RIIKNYGIWLRYDSRSGTHNMYREYRDLTLTGAVDQMYS+MAGRHRCRPRSIQIIRTGIVAAKDTKRPDV+QFH+A IKFPLTHRLPRAPKKKFRTTFKASRPTTFLG
Sbjct:   29 MVVMRQYQVVGRKAVTEKEPNPPVYRMKVFAPNEVTGASQFWYLMHQMRKMKKTTGEILDIVELTEKNSRIIKNYGIWLRYDSRSGTHNMYREYRDLTLTGAVDQMYSQMAGRHRCRPRSIQIIRTGIVAAKDTKRPDVKQFHSAKIKFPLTHRLPRAPKKKFRTTFKASRPTTFLG 205          
BLAST of mRNA_E-siliculosus-1a_F_contig1237.1478.1 vs. uniprot
Match: A0A835YZJ5_9STRA (Ribosomal protein L18 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZJ5_9STRA)

HSP 1 Score: 298 bits (764), Expect = 4.010e-101
Identity = 144/177 (81.36%), Postives = 153/177 (86.44%), Query Frame = 0
Query:    1 MVAMRQYQVVGRKAVTEKEPNPPVYRMKVFAPNEVTGASQFWYLMHQMRKMKKTTGEILDIVELTEKNARIIKNYGIWLRYDSRSGTHNMYREYRDLTLTGAVDQMYSEMAGRHRCRPRSIQIIRTGIVAAKDTKRPDVQQFHNANIKFPLTHRLPRAPKKKFRTTFKASRPTTFLG 177
            M  MRQYQVVGRKA TE +PNPP YRMKVFA  +V   S FWYL+HQMRKMKKTTGEILD+ E+ EKNARIIK+YGIWLRYDSRSGTHNMYREYRDLTLTGAVDQMYSEMAGRHRCRPRSIQIIRTGIVAAKDTKR  V+QF N+ IKFPL HR+PR P KKFRT FKA RP TF G
Sbjct:   32 MPPMRQYQVVGRKAPTEADPNPPAYRMKVFAATKVGAISSFWYLIHQMRKMKKTTGEILDVNEIVEKNARIIKHYGIWLRYDSRSGTHNMYREYRDLTLTGAVDQMYSEMAGRHRCRPRSIQIIRTGIVAAKDTKRAPVKQFQNSQIKFPLAHRIPREPSKKFRTVFKAQRPNTFFG 208          
BLAST of mRNA_E-siliculosus-1a_F_contig1237.1478.1 vs. uniprot
Match: A0A8D0YIJ2_PIG (60S ribosomal protein L18a n=1 Tax=Sus scrofa TaxID=9823 RepID=A0A8D0YIJ2_PIG)

HSP 1 Score: 292 bits (748), Expect = 1.490e-99
Identity = 141/149 (94.63%), Postives = 145/149 (97.32%), Query Frame = 0
Query:    1 MVAMRQYQVVGRKAVTEKEPNPPVYRMKVFAPNEVTGASQFWYLMHQMRKMKKTTGEILDIVELTEKNARIIKNYGIWLRYDSRSGTHNMYREYRDLTLTGAVDQMYSEMAGRHRCRPRSIQIIRTGIVAAKDTKRPDVQQFHNANIKF 149
            MVAMRQYQVVGRKA T+KEPNP VYRMKVFAPNEVTGASQFWYLMHQMRKMKKTTGEILDI+E+TEKNARIIKNYGIWLRYDSRSGTHNMYREYRDL+LTGAVDQMYSEMAGRHRCRPRSIQIIRTGIVAAKDTKRPDVQQFHNA I F
Sbjct:    1 MVAMRQYQVVGRKAPTDKEPNPAVYRMKVFAPNEVTGASQFWYLMHQMRKMKKTTGEILDIIEITEKNARIIKNYGIWLRYDSRSGTHNMYREYRDLSLTGAVDQMYSEMAGRHRCRPRSIQIIRTGIVAAKDTKRPDVQQFHNAKINF 149          
BLAST of mRNA_E-siliculosus-1a_F_contig1237.1478.1 vs. uniprot
Match: K3WCT5_GLOUD (60S ribosomal protein L18a n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WCT5_GLOUD)

HSP 1 Score: 274 bits (701), Expect = 5.280e-92
Identity = 129/174 (74.14%), Postives = 151/174 (86.78%), Query Frame = 0
Query:    4 MRQYQVVGRKAVTEKEPNPPVYRMKVFAPNEVTGASQFWYLMHQMRKMKKTTGEILDIVELTEKNARIIKNYGIWLRYDSRSGTHNMYREYRDLTLTGAVDQMYSEMAGRHRCRPRSIQIIRTGIVAAKDTKRPDVQQFHNANIKFPLTHRLPRAPKKKFRTTFKASRPTTFLG 177
            +RQ+QVVGRKA TEKEPNPP YRMK+FAPNEV   S+FWY +HQM+KMKKTTGEILD+ ELTEKN RI+ NYGIW+RY+SRSGTHNMY+EYRD+TL  AV+QMYSE+AGRHR RPRSIQI+RT IVAAKDTK+ +VQQFH++ IKFPL+HR+ R   K  RT FKA+RPTTF G
Sbjct:    3 IRQFQVVGRKAPTEKEPNPPAYRMKLFAPNEVLAKSRFWYFLHQMKKMKKTTGEILDVNELTEKNKRIVNNYGIWIRYNSRSGTHNMYKEYRDVTLCKAVEQMYSELAGRHRARPRSIQIMRTAIVAAKDTKKLNVQQFHDSKIKFPLSHRIARPSTKNQRTVFKANRPTTFRG 176          
BLAST of mRNA_E-siliculosus-1a_F_contig1237.1478.1 vs. uniprot
Match: A0A8K1FN02_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FN02_PYTOL)

HSP 1 Score: 274 bits (700), Expect = 7.500e-92
Identity = 127/174 (72.99%), Postives = 151/174 (86.78%), Query Frame = 0
Query:    4 MRQYQVVGRKAVTEKEPNPPVYRMKVFAPNEVTGASQFWYLMHQMRKMKKTTGEILDIVELTEKNARIIKNYGIWLRYDSRSGTHNMYREYRDLTLTGAVDQMYSEMAGRHRCRPRSIQIIRTGIVAAKDTKRPDVQQFHNANIKFPLTHRLPRAPKKKFRTTFKASRPTTFLG 177
            +RQ+QVVGRKA T+KEPNPP YRMK+FA NEV   S+FWY +HQM+KMKKTTGEILDI E+TEKN R++ NYGIW+RY+SRSGTHNMY+EYRD+TL  AV+Q+Y+E+AGRHR RPRSIQI+RT IVAAKDTK+ +VQQFH+ANIKFPL+HR+PR   K  RT FKASRP TF G
Sbjct:    3 IRQFQVVGRKAPTDKEPNPPAYRMKIFAANEVLAKSRFWYFLHQMKKMKKTTGEILDINEITEKNNRVVNNYGIWIRYNSRSGTHNMYKEYRDVTLCSAVEQLYAELAGRHRARPRSIQIMRTAIVAAKDTKKGNVQQFHDANIKFPLSHRIPRPSIKNHRTVFKASRPCTFRG 176          
BLAST of mRNA_E-siliculosus-1a_F_contig1237.1478.1 vs. uniprot
Match: A0A5D6XXS3_9STRA (Ribosomal_L18A domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XXS3_9STRA)

HSP 1 Score: 275 bits (702), Expect = 2.760e-91
Identity = 130/177 (73.45%), Postives = 152/177 (85.88%), Query Frame = 0
Query:    1 MVAMRQYQVVGRKAVTEKEPNPPVYRMKVFAPNEVTGASQFWYLMHQMRKMKKTTGEILDIVELTEKNARIIKNYGIWLRYDSRSGTHNMYREYRDLTLTGAVDQMYSEMAGRHRCRPRSIQIIRTGIVAAKDTKRPDVQQFHNANIKFPLTHRLPRAPKKKFRTTFKASRPTTFLG 177
            M  +RQ+QVVGRKA TEKEPNPP YRMK+FAPNEV   S+FWY +HQM+KMKKTTGEILDI ELTEKN RI+KNYGIW+RY+SRSGTHNMY+EYRD+TL  AV+Q+Y+E+AGRHR RPRSIQI+RT IVAAKDTK+ +VQQFH++ IKFPL  R+PR   K  RT FKA+RPTTF G
Sbjct:   59 MNLIRQFQVVGRKAPTEKEPNPPAYRMKLFAPNEVLAKSRFWYFLHQMKKMKKTTGEILDINELTEKNKRIVKNYGIWIRYNSRSGTHNMYKEYRDVTLCSAVEQLYAELAGRHRARPRSIQIMRTAIVAAKDTKKLNVQQFHDSKIKFPLARRIPRPATKDQRTVFKANRPTTFRG 235          
BLAST of mRNA_E-siliculosus-1a_F_contig1237.1478.1 vs. uniprot
Match: M4BR55_HYAAE (60S ribosomal protein L18a n=19 Tax=Peronosporaceae TaxID=4777 RepID=M4BR55_HYAAE)

HSP 1 Score: 272 bits (696), Expect = 3.050e-91
Identity = 128/174 (73.56%), Postives = 152/174 (87.36%), Query Frame = 0
Query:    4 MRQYQVVGRKAVTEKEPNPPVYRMKVFAPNEVTGASQFWYLMHQMRKMKKTTGEILDIVELTEKNARIIKNYGIWLRYDSRSGTHNMYREYRDLTLTGAVDQMYSEMAGRHRCRPRSIQIIRTGIVAAKDTKRPDVQQFHNANIKFPLTHRLPRAPKKKFRTTFKASRPTTFLG 177
            +RQ+QVVGRKA TEKEPNPP YRMK+FAPN V   S+FWY +HQM+KMKKTTGEILDI ELTEKN+R+I NYGIW+RY+SRSGTHNMY+EYRD+T+  AV+QMYSE+AGRHR RPRSIQI+RT IVAAKD+K+ +VQQFH++ I FPL+HRLPRA +K  +T FKASRP TF G
Sbjct:    3 IRQFQVVGRKAPTEKEPNPPAYRMKLFAPNPVLAQSRFWYFLHQMKKMKKTTGEILDINELTEKNSRVINNYGIWIRYNSRSGTHNMYKEYRDVTMCKAVEQMYSELAGRHRARPRSIQIMRTAIVAAKDSKKLNVQQFHDSKIAFPLSHRLPRAAEKHQKTVFKASRPCTFRG 176          
BLAST of mRNA_E-siliculosus-1a_F_contig1237.1478.1 vs. uniprot
Match: H3H534_PHYRM (60S ribosomal protein L18a n=3 Tax=Phytophthora TaxID=4783 RepID=H3H534_PHYRM)

HSP 1 Score: 271 bits (694), Expect = 6.150e-91
Identity = 125/174 (71.84%), Postives = 151/174 (86.78%), Query Frame = 0
Query:    4 MRQYQVVGRKAVTEKEPNPPVYRMKVFAPNEVTGASQFWYLMHQMRKMKKTTGEILDIVELTEKNARIIKNYGIWLRYDSRSGTHNMYREYRDLTLTGAVDQMYSEMAGRHRCRPRSIQIIRTGIVAAKDTKRPDVQQFHNANIKFPLTHRLPRAPKKKFRTTFKASRPTTFLG 177
            +RQ+QVVGRKA TEKEPNPP YRMK+FAPN V   S+FWY +HQM+KMKKTTGEILD+ ELTEKN RI+KNYG+W+RY+SRSGTHNMY+EYRDLTL  AV+QMY+E+AGRHR RPRSIQI+RT IVAAKDT++  ++Q+H++ I FPL+HRLPRAP+K   + FKASRP TF G
Sbjct:    3 IRQFQVVGRKAPTEKEPNPPAYRMKLFAPNPVLAQSRFWYFLHQMKKMKKTTGEILDVNELTEKNRRIVKNYGVWIRYNSRSGTHNMYKEYRDLTLCKAVEQMYAELAGRHRARPRSIQIMRTAIVAAKDTQKHGLKQYHDSKISFPLSHRLPRAPEKHLNSVFKASRPCTFRG 176          
BLAST of mRNA_E-siliculosus-1a_F_contig1237.1478.1 vs. uniprot
Match: A0A2D4C8D4_PYTIN (60S ribosomal protein L18a n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C8D4_PYTIN)

HSP 1 Score: 278 bits (711), Expect = 1.020e-90
Identity = 129/174 (74.14%), Postives = 151/174 (86.78%), Query Frame = 0
Query:    4 MRQYQVVGRKAVTEKEPNPPVYRMKVFAPNEVTGASQFWYLMHQMRKMKKTTGEILDIVELTEKNARIIKNYGIWLRYDSRSGTHNMYREYRDLTLTGAVDQMYSEMAGRHRCRPRSIQIIRTGIVAAKDTKRPDVQQFHNANIKFPLTHRLPRAPKKKFRTTFKASRPTTFLG 177
            +R +QVVGRKA T+KEPNPP YRMK+FAPN V   S+FWY +HQM+KMKKTTGEILD+ EL EKN RI+KNYGIW+RY+SRSGTHNMY+EYRDLTL GAVDQ+YSE+AGRHR RPRSIQI+RT +VAAKDTK+ +VQQFH++ IKFPL+HR+PR   K  RT FKASRPTTF G
Sbjct:  200 IRHFQVVGRKAPTDKEPNPPAYRMKLFAPNAVIAKSRFWYFLHQMKKMKKTTGEILDVNELVEKNKRIVKNYGIWIRYNSRSGTHNMYKEYRDLTLCGAVDQLYSELAGRHRARPRSIQIMRTAVVAAKDTKKANVQQFHDSKIKFPLSHRIPRPSIKNHRTVFKASRPTTFRG 373          
BLAST of mRNA_E-siliculosus-1a_F_contig1237.1478.1 vs. uniprot
Match: A0A1V9Z1Q2_9STRA (60S ribosomal protein L18a n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z1Q2_9STRA)

HSP 1 Score: 267 bits (683), Expect = 3.010e-89
Identity = 125/175 (71.43%), Postives = 149/175 (85.14%), Query Frame = 0
Query:    1 MVAMRQYQVVGRKAVTEKEPNPPVYRMKVFAPNEVTGASQFWYLMHQMRKMKKTTGEILDIVELTEKNARIIKNYGIWLRYDSRSGTHNMYREYRDLTLTGAVDQMYSEMAGRHRCRPRSIQIIRTGIVAAKDTKRPDVQQFHNANIKFPLTHRLPRAPKKKFRTTFKASRPTTF 175
            M A+ QYQVVGRKA TE +PNPP +RMK+FAPNEV   S+FWY +HQM+KMKKTTGEIL I EL EKN RI+KNYGIW+RY+SRSGTHNMY+EYR +TL GAV+QMY+E+AGRHR RPRSIQI+RT I+AAKD K+P+  Q+H++NIKFPL+HR+PR   K  RT FKASRPTTF
Sbjct:    1 MPAIHQYQVVGRKAPTETDPNPPAFRMKLFAPNEVLAKSRFWYFLHQMKKMKKTTGEILQINELREKNKRIVKNYGIWIRYNSRSGTHNMYKEYRGVTLCGAVEQMYAELAGRHRARPRSIQIMRTAILAAKDCKKPNTLQYHDSNIKFPLSHRVPRPATKNQRTVFKASRPTTF 175          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1237.1478.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K1C9_9PHAE1.180e-12296.61Ribosomal_L18A domain-containing protein n=2 Tax=E... [more]
A0A835YZJ5_9STRA4.010e-10181.36Ribosomal protein L18 n=1 Tax=Tribonema minus TaxI... [more]
A0A8D0YIJ2_PIG1.490e-9994.6360S ribosomal protein L18a n=1 Tax=Sus scrofa TaxI... [more]
K3WCT5_GLOUD5.280e-9274.1460S ribosomal protein L18a n=1 Tax=Globisporangium... [more]
A0A8K1FN02_PYTOL7.500e-9272.99Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A5D6XXS3_9STRA2.760e-9173.45Ribosomal_L18A domain-containing protein n=1 Tax=P... [more]
M4BR55_HYAAE3.050e-9173.5660S ribosomal protein L18a n=19 Tax=Peronosporacea... [more]
H3H534_PHYRM6.150e-9171.8460S ribosomal protein L18a n=3 Tax=Phytophthora Ta... [more]
A0A2D4C8D4_PYTIN1.020e-9074.1460S ribosomal protein L18a n=1 Tax=Pythium insidio... [more]
A0A1V9Z1Q2_9STRA3.010e-8971.4360S ribosomal protein L18a n=1 Tax=Achlya hypogyna... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.10.20.10coord: 1..69
e-value: 3.0E-28
score: 99.4
NoneNo IPR availableGENE3D3.10.20.10coord: 71..145
e-value: 4.4E-37
score: 128.1
NoneNo IPR availablePANTHERPTHR10052:SF160S RIBOSOMAL PROTEIN L18Acoord: 4..176
NoneNo IPR availableSUPERFAMILY160374RplX-likecoord: 71..144
IPR02113860S ribosomal protein L18a/ L20, eukaryotesPIRSFPIRSF002190Ribosomal_L18acoord: 1..176
e-value: 2.6E-70
score: 233.3
IPR023573Ribosomal protein 50S-L18Ae/60S-L20/60S-L18APFAMPF01775Ribosomal_L18Acoord: 4..125
e-value: 1.3E-51
score: 173.8
IPR02887750S ribosomal protein L18Ae/60S ribosomal protein L20 and L18aPANTHERPTHR1005260S RIBOSOMAL PROTEIN L18Acoord: 4..176
IPR02887750S ribosomal protein L18Ae/60S ribosomal protein L20 and L18aHAMAPMF_00273Ribosomal_L18Aecoord: 4..67
score: 18.47

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1237contigE-siliculosus-1a_F_contig1237:9701..13263 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1237.1478.1mRNA_E-siliculosus-1a_F_contig1237.1478.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig1237 7677..13263 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig1237.1478.1 ID=prot_E-siliculosus-1a_F_contig1237.1478.1|Name=mRNA_E-siliculosus-1a_F_contig1237.1478.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=178bp
MVAMRQYQVVGRKAVTEKEPNPPVYRMKVFAPNEVTGASQFWYLMHQMRK
MKKTTGEILDIVELTEKNARIIKNYGIWLRYDSRSGTHNMYREYRDLTLT
GAVDQMYSEMAGRHRCRPRSIQIIRTGIVAAKDTKRPDVQQFHNANIKFP
LTHRLPRAPKKKFRTTFKASRPTTFLG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR02887750S_L18Ae/Ribosomal_L18a/L20
IPR023573Ribosomal_L18a//L18Ae/LX
IPR021138Ribosomal_L18a/L20_eukaryotes