mRNA_E-siliculosus-1a_F_contig1237.1478.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1237.1478.1
Unique NamemRNA_E-siliculosus-1a_F_contig1237.1478.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1237.1478.1 vs. uniprot
Match: A0A6H5K1C9_9PHAE (Ribosomal_L18A domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K1C9_9PHAE)

HSP 1 Score: 355 bits (912), Expect = 2.730e-114
Identity = 172/178 (96.63%), Postives = 176/178 (98.88%), Query Frame = 3 
Query: 2022 KMVAMRQYQVVGRKAVTEKEPNPPVYRMKVFAPNEVTGASQFWYLMHQMRKMKKTTGEILDIVELTEKNARIIKNYGIWLRYDSRSGTHNMYREYRDLTLTGAVDQMYSEMAGRHRCRPRSIQIIRTGIVAAKDTKRPDVQQFHNANIKFPLTHRLPRAPKKKFRTTFKASRPTTFLG 2555
            KMV MRQYQVVGRKAVTEKEPNPPVYRMKVFAPNEVTGASQFWYLMHQMRKMKKTTGEILDIVELTEKN+RIIKNYGIWLRYDSRSGTHNMYREYRDLTLTGAVDQMYS+MAGRHRCRPRSIQIIRTGIVAAKDTKRPDV+QFH+A IKFPLTHRLPRAPKKKFRTTFKASRPTTFLG
Sbjct:   28 KMVVMRQYQVVGRKAVTEKEPNPPVYRMKVFAPNEVTGASQFWYLMHQMRKMKKTTGEILDIVELTEKNSRIIKNYGIWLRYDSRSGTHNMYREYRDLTLTGAVDQMYSQMAGRHRCRPRSIQIIRTGIVAAKDTKRPDVKQFHSAKIKFPLTHRLPRAPKKKFRTTFKASRPTTFLG 205
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BLAST of mRNA_E-siliculosus-1a_F_contig1237.1478.1 vs. uniprot
Match: A0A835YZJ5_9STRA (Ribosomal protein L18 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZJ5_9STRA)

HSP 1 Score: 299 bits (766), Expect = 1.110e-92
Identity = 144/177 (81.36%), Postives = 153/177 (86.44%), Query Frame = 3 
Query: 2025 MVAMRQYQVVGRKAVTEKEPNPPVYRMKVFAPNEVTGASQFWYLMHQMRKMKKTTGEILDIVELTEKNARIIKNYGIWLRYDSRSGTHNMYREYRDLTLTGAVDQMYSEMAGRHRCRPRSIQIIRTGIVAAKDTKRPDVQQFHNANIKFPLTHRLPRAPKKKFRTTFKASRPTTFLG 2555
            M  MRQYQVVGRKA TE +PNPP YRMKVFA  +V   S FWYL+HQMRKMKKTTGEILD+ E+ EKNARIIK+YGIWLRYDSRSGTHNMYREYRDLTLTGAVDQMYSEMAGRHRCRPRSIQIIRTGIVAAKDTKR  V+QF N+ IKFPL HR+PR P KKFRT FKA RP TF G
Sbjct:   32 MPPMRQYQVVGRKAPTEADPNPPAYRMKVFAATKVGAISSFWYLIHQMRKMKKTTGEILDVNEIVEKNARIIKHYGIWLRYDSRSGTHNMYREYRDLTLTGAVDQMYSEMAGRHRCRPRSIQIIRTGIVAAKDTKRAPVKQFQNSQIKFPLAHRIPREPSKKFRTVFKAQRPNTFFG 208
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BLAST of mRNA_E-siliculosus-1a_F_contig1237.1478.1 vs. uniprot
Match: A0A8D0YIJ2_PIG (60S ribosomal protein L18a n=1 Tax=Sus scrofa TaxID=9823 RepID=A0A8D0YIJ2_PIG)

HSP 1 Score: 293 bits (750), Expect = 3.350e-91
Identity = 141/149 (94.63%), Postives = 145/149 (97.32%), Query Frame = 3 
Query: 2025 MVAMRQYQVVGRKAVTEKEPNPPVYRMKVFAPNEVTGASQFWYLMHQMRKMKKTTGEILDIVELTEKNARIIKNYGIWLRYDSRSGTHNMYREYRDLTLTGAVDQMYSEMAGRHRCRPRSIQIIRTGIVAAKDTKRPDVQQFHNANIKF 2471
            MVAMRQYQVVGRKA T+KEPNP VYRMKVFAPNEVTGASQFWYLMHQMRKMKKTTGEILDI+E+TEKNARIIKNYGIWLRYDSRSGTHNMYREYRDL+LTGAVDQMYSEMAGRHRCRPRSIQIIRTGIVAAKDTKRPDVQQFHNA I F
Sbjct:    1 MVAMRQYQVVGRKAPTDKEPNPAVYRMKVFAPNEVTGASQFWYLMHQMRKMKKTTGEILDIIEITEKNARIIKNYGIWLRYDSRSGTHNMYREYRDLSLTGAVDQMYSEMAGRHRCRPRSIQIIRTGIVAAKDTKRPDVQQFHNAKINF 149
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BLAST of mRNA_E-siliculosus-1a_F_contig1237.1478.1 vs. uniprot
Match: K3WCT5_GLOUD (60S ribosomal protein L18a n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WCT5_GLOUD)

HSP 1 Score: 275 bits (703), Expect = 6.110e-84
Identity = 129/174 (74.14%), Postives = 151/174 (86.78%), Query Frame = 3 
Query: 2034 MRQYQVVGRKAVTEKEPNPPVYRMKVFAPNEVTGASQFWYLMHQMRKMKKTTGEILDIVELTEKNARIIKNYGIWLRYDSRSGTHNMYREYRDLTLTGAVDQMYSEMAGRHRCRPRSIQIIRTGIVAAKDTKRPDVQQFHNANIKFPLTHRLPRAPKKKFRTTFKASRPTTFLG 2555
            +RQ+QVVGRKA TEKEPNPP YRMK+FAPNEV   S+FWY +HQM+KMKKTTGEILD+ ELTEKN RI+ NYGIW+RY+SRSGTHNMY+EYRD+TL  AV+QMYSE+AGRHR RPRSIQI+RT IVAAKDTK+ +VQQFH++ IKFPL+HR+ R   K  RT FKA+RPTTF G
Sbjct:    3 IRQFQVVGRKAPTEKEPNPPAYRMKLFAPNEVLAKSRFWYFLHQMKKMKKTTGEILDVNELTEKNKRIVNNYGIWIRYNSRSGTHNMYKEYRDVTLCKAVEQMYSELAGRHRARPRSIQIMRTAIVAAKDTKKLNVQQFHDSKIKFPLSHRIARPSTKNQRTVFKANRPTTFRG 176
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BLAST of mRNA_E-siliculosus-1a_F_contig1237.1478.1 vs. uniprot
Match: A0A8K1FN02_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FN02_PYTOL)

HSP 1 Score: 275 bits (702), Expect = 8.540e-84
Identity = 127/174 (72.99%), Postives = 151/174 (86.78%), Query Frame = 3 
Query: 2034 MRQYQVVGRKAVTEKEPNPPVYRMKVFAPNEVTGASQFWYLMHQMRKMKKTTGEILDIVELTEKNARIIKNYGIWLRYDSRSGTHNMYREYRDLTLTGAVDQMYSEMAGRHRCRPRSIQIIRTGIVAAKDTKRPDVQQFHNANIKFPLTHRLPRAPKKKFRTTFKASRPTTFLG 2555
            +RQ+QVVGRKA T+KEPNPP YRMK+FA NEV   S+FWY +HQM+KMKKTTGEILDI E+TEKN R++ NYGIW+RY+SRSGTHNMY+EYRD+TL  AV+Q+Y+E+AGRHR RPRSIQI+RT IVAAKDTK+ +VQQFH+ANIKFPL+HR+PR   K  RT FKASRP TF G
Sbjct:    3 IRQFQVVGRKAPTDKEPNPPAYRMKIFAANEVLAKSRFWYFLHQMKKMKKTTGEILDINEITEKNNRVVNNYGIWIRYNSRSGTHNMYKEYRDVTLCSAVEQLYAELAGRHRARPRSIQIMRTAIVAAKDTKKGNVQQFHDANIKFPLSHRIPRPSIKNHRTVFKASRPCTFRG 176
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BLAST of mRNA_E-siliculosus-1a_F_contig1237.1478.1 vs. uniprot
Match: A0A5D6XXS3_9STRA (Ribosomal_L18A domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XXS3_9STRA)

HSP 1 Score: 275 bits (704), Expect = 3.250e-83
Identity = 130/177 (73.45%), Postives = 152/177 (85.88%), Query Frame = 3 
Query: 2025 MVAMRQYQVVGRKAVTEKEPNPPVYRMKVFAPNEVTGASQFWYLMHQMRKMKKTTGEILDIVELTEKNARIIKNYGIWLRYDSRSGTHNMYREYRDLTLTGAVDQMYSEMAGRHRCRPRSIQIIRTGIVAAKDTKRPDVQQFHNANIKFPLTHRLPRAPKKKFRTTFKASRPTTFLG 2555
            M  +RQ+QVVGRKA TEKEPNPP YRMK+FAPNEV   S+FWY +HQM+KMKKTTGEILDI ELTEKN RI+KNYGIW+RY+SRSGTHNMY+EYRD+TL  AV+Q+Y+E+AGRHR RPRSIQI+RT IVAAKDTK+ +VQQFH++ IKFPL  R+PR   K  RT FKA+RPTTF G
Sbjct:   59 MNLIRQFQVVGRKAPTEKEPNPPAYRMKLFAPNEVLAKSRFWYFLHQMKKMKKTTGEILDINELTEKNKRIVKNYGIWIRYNSRSGTHNMYKEYRDVTLCSAVEQLYAELAGRHRARPRSIQIMRTAIVAAKDTKKLNVQQFHDSKIKFPLARRIPRPATKDQRTVFKANRPTTFRG 235
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1237.1478.1 vs. uniprot
Match: M4BR55_HYAAE (60S ribosomal protein L18a n=19 Tax=Peronosporaceae TaxID=4777 RepID=M4BR55_HYAAE)

HSP 1 Score: 273 bits (698), Expect = 3.270e-83
Identity = 128/174 (73.56%), Postives = 152/174 (87.36%), Query Frame = 3 
Query: 2034 MRQYQVVGRKAVTEKEPNPPVYRMKVFAPNEVTGASQFWYLMHQMRKMKKTTGEILDIVELTEKNARIIKNYGIWLRYDSRSGTHNMYREYRDLTLTGAVDQMYSEMAGRHRCRPRSIQIIRTGIVAAKDTKRPDVQQFHNANIKFPLTHRLPRAPKKKFRTTFKASRPTTFLG 2555
            +RQ+QVVGRKA TEKEPNPP YRMK+FAPN V   S+FWY +HQM+KMKKTTGEILDI ELTEKN+R+I NYGIW+RY+SRSGTHNMY+EYRD+T+  AV+QMYSE+AGRHR RPRSIQI+RT IVAAKD+K+ +VQQFH++ I FPL+HRLPRA +K  +T FKASRP TF G
Sbjct:    3 IRQFQVVGRKAPTEKEPNPPAYRMKLFAPNPVLAQSRFWYFLHQMKKMKKTTGEILDINELTEKNSRVINNYGIWIRYNSRSGTHNMYKEYRDVTMCKAVEQMYSELAGRHRARPRSIQIMRTAIVAAKDSKKLNVQQFHDSKIAFPLSHRLPRAAEKHQKTVFKASRPCTFRG 176
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BLAST of mRNA_E-siliculosus-1a_F_contig1237.1478.1 vs. uniprot
Match: H3H534_PHYRM (60S ribosomal protein L18a n=3 Tax=Phytophthora TaxID=4783 RepID=H3H534_PHYRM)

HSP 1 Score: 272 bits (696), Expect = 6.400e-83
Identity = 125/174 (71.84%), Postives = 151/174 (86.78%), Query Frame = 3 
Query: 2034 MRQYQVVGRKAVTEKEPNPPVYRMKVFAPNEVTGASQFWYLMHQMRKMKKTTGEILDIVELTEKNARIIKNYGIWLRYDSRSGTHNMYREYRDLTLTGAVDQMYSEMAGRHRCRPRSIQIIRTGIVAAKDTKRPDVQQFHNANIKFPLTHRLPRAPKKKFRTTFKASRPTTFLG 2555
            +RQ+QVVGRKA TEKEPNPP YRMK+FAPN V   S+FWY +HQM+KMKKTTGEILD+ ELTEKN RI+KNYG+W+RY+SRSGTHNMY+EYRDLTL  AV+QMY+E+AGRHR RPRSIQI+RT IVAAKDT++  ++Q+H++ I FPL+HRLPRAP+K   + FKASRP TF G
Sbjct:    3 IRQFQVVGRKAPTEKEPNPPAYRMKLFAPNPVLAQSRFWYFLHQMKKMKKTTGEILDVNELTEKNRRIVKNYGVWIRYNSRSGTHNMYKEYRDLTLCKAVEQMYAELAGRHRARPRSIQIMRTAIVAAKDTQKHGLKQYHDSKISFPLSHRLPRAPEKHLNSVFKASRPCTFRG 176
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BLAST of mRNA_E-siliculosus-1a_F_contig1237.1478.1 vs. uniprot
Match: A0A2D4C8D4_PYTIN (60S ribosomal protein L18a n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C8D4_PYTIN)

HSP 1 Score: 279 bits (713), Expect = 1.380e-82
Identity = 129/174 (74.14%), Postives = 151/174 (86.78%), Query Frame = 3 
Query: 2034 MRQYQVVGRKAVTEKEPNPPVYRMKVFAPNEVTGASQFWYLMHQMRKMKKTTGEILDIVELTEKNARIIKNYGIWLRYDSRSGTHNMYREYRDLTLTGAVDQMYSEMAGRHRCRPRSIQIIRTGIVAAKDTKRPDVQQFHNANIKFPLTHRLPRAPKKKFRTTFKASRPTTFLG 2555
            +R +QVVGRKA T+KEPNPP YRMK+FAPN V   S+FWY +HQM+KMKKTTGEILD+ EL EKN RI+KNYGIW+RY+SRSGTHNMY+EYRDLTL GAVDQ+YSE+AGRHR RPRSIQI+RT +VAAKDTK+ +VQQFH++ IKFPL+HR+PR   K  RT FKASRPTTF G
Sbjct:  200 IRHFQVVGRKAPTDKEPNPPAYRMKLFAPNAVIAKSRFWYFLHQMKKMKKTTGEILDVNELVEKNKRIVKNYGIWIRYNSRSGTHNMYKEYRDLTLCGAVDQLYSELAGRHRARPRSIQIMRTAVVAAKDTKKANVQQFHDSKIKFPLSHRIPRPSIKNHRTVFKASRPTTFRG 373
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1237.1478.1 vs. uniprot
Match: A0A1V9Z1Q2_9STRA (60S ribosomal protein L18a n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z1Q2_9STRA)

HSP 1 Score: 268 bits (685), Expect = 2.640e-81
Identity = 125/175 (71.43%), Postives = 149/175 (85.14%), Query Frame = 3 
Query: 2025 MVAMRQYQVVGRKAVTEKEPNPPVYRMKVFAPNEVTGASQFWYLMHQMRKMKKTTGEILDIVELTEKNARIIKNYGIWLRYDSRSGTHNMYREYRDLTLTGAVDQMYSEMAGRHRCRPRSIQIIRTGIVAAKDTKRPDVQQFHNANIKFPLTHRLPRAPKKKFRTTFKASRPTTF 2549
            M A+ QYQVVGRKA TE +PNPP +RMK+FAPNEV   S+FWY +HQM+KMKKTTGEIL I EL EKN RI+KNYGIW+RY+SRSGTHNMY+EYR +TL GAV+QMY+E+AGRHR RPRSIQI+RT I+AAKD K+P+  Q+H++NIKFPL+HR+PR   K  RT FKASRPTTF
Sbjct:    1 MPAIHQYQVVGRKAPTETDPNPPAFRMKLFAPNEVLAKSRFWYFLHQMKKMKKTTGEILQINELREKNKRIVKNYGIWIRYNSRSGTHNMYKEYRGVTLCGAVEQMYAELAGRHRARPRSIQIMRTAILAAKDCKKPNTLQYHDSNIKFPLSHRVPRPATKNQRTVFKASRPTTF 175
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1237.1478.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K1C9_9PHAE2.730e-11496.63Ribosomal_L18A domain-containing protein n=2 Tax=E... [more]
A0A835YZJ5_9STRA1.110e-9281.36Ribosomal protein L18 n=1 Tax=Tribonema minus TaxI... [more]
A0A8D0YIJ2_PIG3.350e-9194.6360S ribosomal protein L18a n=1 Tax=Sus scrofa TaxI... [more]
K3WCT5_GLOUD6.110e-8474.1460S ribosomal protein L18a n=1 Tax=Globisporangium... [more]
A0A8K1FN02_PYTOL8.540e-8472.99Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A5D6XXS3_9STRA3.250e-8373.45Ribosomal_L18A domain-containing protein n=1 Tax=P... [more]
M4BR55_HYAAE3.270e-8373.5660S ribosomal protein L18a n=19 Tax=Peronosporacea... [more]
H3H534_PHYRM6.400e-8371.8460S ribosomal protein L18a n=3 Tax=Phytophthora Ta... [more]
A0A2D4C8D4_PYTIN1.380e-8274.1460S ribosomal protein L18a n=1 Tax=Pythium insidio... [more]
A0A1V9Z1Q2_9STRA2.640e-8171.4360S ribosomal protein L18a n=1 Tax=Achlya hypogyna... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1237contigE-siliculosus-1a_F_contig1237:7677..13263 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size534
Model size719
Exons6
Ec32 orthologEc-26_003390.1
Ec32 ortholog description60S ribosomal protein L18a
Hectar predicted targeting categoryother localisation
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.J
EggNOG OGsCOG2157@1,KOG0829@2759
EggNOG free text desc.structural constituent of ribosome
GOsGO:0000003,GO:0000902,GO:0000904,GO:0002181,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005773,GO:0005774,GO:0005829,GO:0005840,GO:0005844,GO:0005886,GO:0005911,GO:0006412,GO:0006518,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009506,GO:0009653,GO:0009790,GO:0009791,GO:0009793,GO:0009826,GO:0009856,GO:0009860,GO:0009932,GO:0009987,GO:0010154,GO:0010467,GO:0015934,GO:0016020,GO:0016043,GO:0016049,GO:0019538,GO:0022414,GO:0022625,GO:0022626,GO:0030054,GO:0030154,GO:0031090,GO:0032501,GO:0032502,GO:0032989,GO:0032991,GO:0034641,GO:0034645,GO:0040007,GO:0042788,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044706,GO:0048316,GO:0048468,GO:0048588,GO:0048589,GO:0048608,GO:0048731,GO:0048856,GO:0048868,GO:0048869,GO:0051704,GO:0055044,GO:0060560,GO:0061458,GO:0071704,GO:0071840,GO:0071944,GO:0097159,GO:0098588,GO:0098805,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
KEGG ModuleM00177
KEGG Pathwayko03010,map03010
KEGG koko:K02882
Preferred nameRPL20B
Seed eggNOG ortholog2880.D8LL36
Seed ortholog evalue3.1e-98
Seed ortholog score364.4
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1237.1478.1prot_E-siliculosus-1a_F_contig1237.1478.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1237 9701..13263 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927756.908163-UTR-E-siliculosus-1a_F_contig1237:7676..78611622927756.908163-UTR-E-siliculosus-1a_F_contig1237:7676..7861Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1237 7677..7861 +
1696318668.199096-UTR-E-siliculosus-1a_F_contig1237:7676..78611696318668.199096-UTR-E-siliculosus-1a_F_contig1237:7676..7861Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1237 7677..7861 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927756.9189835-CDS-E-siliculosus-1a_F_contig1237:9700..97841622927756.9189835-CDS-E-siliculosus-1a_F_contig1237:9700..9784Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1237 9701..9784 +
1696318668.211766-CDS-E-siliculosus-1a_F_contig1237:9700..97841696318668.211766-CDS-E-siliculosus-1a_F_contig1237:9700..9784Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1237 9701..9784 +
1622927756.9344788-CDS-E-siliculosus-1a_F_contig1237:10763..108681622927756.9344788-CDS-E-siliculosus-1a_F_contig1237:10763..10868Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1237 10764..10868 +
1696318668.2244933-CDS-E-siliculosus-1a_F_contig1237:10763..108681696318668.2244933-CDS-E-siliculosus-1a_F_contig1237:10763..10868Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1237 10764..10868 +
1622927756.9532392-CDS-E-siliculosus-1a_F_contig1237:11287..114171622927756.9532392-CDS-E-siliculosus-1a_F_contig1237:11287..11417Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1237 11288..11417 +
1696318668.2327168-CDS-E-siliculosus-1a_F_contig1237:11287..114171696318668.2327168-CDS-E-siliculosus-1a_F_contig1237:11287..11417Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1237 11288..11417 +
1622927756.9710352-CDS-E-siliculosus-1a_F_contig1237:12188..122981622927756.9710352-CDS-E-siliculosus-1a_F_contig1237:12188..12298Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1237 12189..12298 +
1696318668.2410038-CDS-E-siliculosus-1a_F_contig1237:12188..122981696318668.2410038-CDS-E-siliculosus-1a_F_contig1237:12188..12298Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1237 12189..12298 +
1622927756.9885938-CDS-E-siliculosus-1a_F_contig1237:13158..132631622927756.9885938-CDS-E-siliculosus-1a_F_contig1237:13158..13263Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1237 13159..13263 +
1696318668.2490828-CDS-E-siliculosus-1a_F_contig1237:13158..132631696318668.2490828-CDS-E-siliculosus-1a_F_contig1237:13158..13263Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1237 13159..13263 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1237.1478.1

>prot_E-siliculosus-1a_F_contig1237.1478.1 ID=prot_E-siliculosus-1a_F_contig1237.1478.1|Name=mRNA_E-siliculosus-1a_F_contig1237.1478.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=178bp
MVAMRQYQVVGRKAVTEKEPNPPVYRMKVFAPNEVTGASQFWYLMHQMRK
MKKTTGEILDIVELTEKNARIIKNYGIWLRYDSRSGTHNMYREYRDLTLT
GAVDQMYSEMAGRHRCRPRSIQIIRTGIVAAKDTKRPDVQQFHNANIKFP
LTHRLPRAPKKKFRTTFKASRPTTFLG*
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mRNA from alignment at E-siliculosus-1a_F_contig1237:7677..13263+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1237.1478.1 ID=mRNA_E-siliculosus-1a_F_contig1237.1478.1|Name=mRNA_E-siliculosus-1a_F_contig1237.1478.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=5587bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1237:7677..13263+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGTCGAAAAGCACCACGCGGTTCGTCGAAAAACAGGAAAGAAGCAACA
CAGCAGTTACATTTGTACCCCCCTACTCGTGCAGATTGATTCTACGTCCC
CCCTCTCTAGCCATTGCGTTGCCAGGGAGCTGCGAGGCCAGTCCTGCTGA
TCCTCAGGCAACCCCACGGAATCCGGCTGTTCAAGGTGAGCTAGCAGAGA
GTACTGGTGTTTGTCAAGAGTCCGTGTACAGCTTGCGAGGTTCGCTCTCA
TGCAAGGAACTTCACCGCAAGCCTGGAGCACGAAAACAAGAGATTTTGAA
CCCTCTTTTTTTGTGGACCAGCAGCGGTGAGGGTGGCTGTCGACTGCCGA
CGGCCTGTGGTGCTGTCTTTCTCTCCGCTGCTACTTCTGCAACGAGGAGG
GAGGAGGTGGCACGTTTTCATGCGCTGTGGAGAATAGAGGCCGGGGTAGT
TCTTGTTGCGGCGGCATTGTCGGCGTTCGTTTGGAGAGCTGTTCTGTGCA
GGGCTTGATCGAACGTGTAGTACTGCTGAAGCTCTGCTGTGCGTGTCACC
AGACTAGACACGATGAATTGGGAGCACAGCCACCCCGTAGGTCTGTAGTC
ACGCGACCCGTCAGTTGAAGGCACGATTCTGGCGGCTGCCCAAGGCAAAA
TGCCGCCTCGACAGAGCGTTGGTGCGTGTGCGAGCTATCACACCTTCTTG
TCTCGCTACTCTGGGTCGATAAAAAAAACGCCTTGCTTGTGTGTGGGAGT
TGGTTGCTCGCCCACACCGCTCGGTCGAGCTTGGTTGTTGCCGCCAACAG
CATCATTGACATCGCGCACACCTACCCGGCGTTCCCCGCATATACAATAG
CCGTGCGTGTGGAGAAGCAGCATCACGCAACCCTGCCAGCAACTGAAACG
TGGTGTTTGTGATCCTGTGTCTTTGGCACTCGTGATTTTTTGCATACACC
AAGGATGGCTCTGCAGCAGTAGTATGCTCCCGTCGATGCTTGCAGCAAAG
GCAGACTCGTCCCTTCGAATAGGCCACGAGTCCAGCTGTAAAGCGAGTGG
AAATACGTAGCACAACACCTGTCAATCGAAACGCACAACGCCACAATCCT
CGGGCACTCAATTGCCTTGATTGCGAGGGAGCGGCACCTTGTACGTGTAT
CCGTTGTTCAACTTGTATACCACCCTCCTCTTCCGTGTACTGCTGTACCG
CATTACATACGTTTTTGACCCCCGATTGCTGAACAAACGCTCAACAAGGC
GGGGCAGGTGATCATGTCCCCTCCTCCATGGGAGATAGATGGATAGCACC
ACCGAGGTACCTTTCGAGATAGTTTCGGAAACGGTAGCACGTTCGTTCAG
CTCTCTGCGAACTCTTCCCGTTGGAGGGGACACCTGCCTTCGGAAGTCTC
CAGGCGGTTGATGTTCTCCATCACAACCAGTACTAGCCAAGAACAAAGCC
GTAAGCTGTGCAGCTTCGCAAGTCTCCAGTCTGTTGATGTTTGTTCTCCA
TCACACAAGCAGTAGTAGCCCAAAACCAGTCAGCTGTACACCACATGTAT
TTTTGTGAAACAATGCCCCCATCCCGTAACCCCCCCGGTGTAGACCCTGC
AGGATGCACGTTGTCTGGCCTTAAGCCGTGCTTGCTTCTGTCGAGAGGCT
ATTCCTGTTGCTGCTGCTTCTGCTGCTTTCCCGTGATTAAAAAGTATGCT
GATTAAATTTTCCAGAAGCCAAACCTGTGGAAGATGACACTTCTTTCCAA
TGAGGATGGATATCGACTCCAGCGGCAGCAGAAGCGGTCAGAGTGTTTGT
AGTTTCCTCAGGCAGCCTGGCAGCCGTGCGATTCCCTCCGCACAACTCGG
TAGCGGCACTCAACATCGAAATGCACGGTTTCCCGTACCCTGCGTATGTC
CACGTCCACCCCACCCATCCGCTTTCTCGCCAAGCTGTAAATGGGGATTT
CGACATCTCTGTTGTCTTGACTCCCGCTGCACCCTACCCCAACCCTATTG
TTTCTTGTGTGTTGTTTTGGGAAGATGGTTGCCATGCGCCAGTACCAGGT
GGTCGGCCGCAAGGCCGTCACGGAGAAGGAGCCGAACCCGCCCGTATACC
GGATGAAGGTGTGTGATTCGTTCCGCCTGTTTCGTCCTGTGTGGCCACTC
GCACGTGAGAAGCTCTCGGAAAAACTACGCTTCCTGCGGTTGGACGTTTT
CCATAGCCAAGTCGGACGTATGCGTAGTAGATGGTACCGTTGCGTTTGTC
TCATTCTGGATGGAGTTCAGACAAATACTAGTTCGCAGTTATCTCAGGCG
CATGCGCGATCTTTGATGTGGCCTGTTATTGGTGGTTTTCGTTTTTCGAA
CGCAACAAAAGGGCGTTTATGTGGTAGAGGTACGGCAGTTCCTTGTACCC
GATGGAGGATACGTCTCCTGCTGATTTGTGTTCGCATGAAGGAACTCGAG
ATCTAGTTATTTGATGCGTGTGCGCGCCAGCACCGAGCAGCTGCTGCTGC
TGCTGCTGCTTGGGTTCCAAGCCCTGTCGTGTACCGAATGGAGGAAGAAG
TTGCAATAGTCAGAGTTAGGTGCTGTTGTTGGTATGTCAGCTGCTTTGCA
ACATCTAGGTTCCTTTCTAGAGAAGCGTTTTTCCTGTAGGCTCGTTTGAG
ACTTGAGTGCAAGGGCTTGGAAAGGGATGCCCCTCCTTAGGACCCATCTC
GGGTGGGCGGCAGGGCCTCCCTTCTTGTTCAATTGTTCTCAAGGACACCG
TGTTCAACGACGTGCATGCAGTTCTTCTTGCACATCGGTGAAGGACGCTT
TCAACTCCCGGCTGTACGCCTCGGCGTGTCTCGTTACAAGTGAAGGCGCA
GCTGCTTATTAGGGAGGTTCACACCGTATCGTGGCTTTGGTGGGACTGCT
GCGTGTGCTTGGAATCGTTGTGGAGCCTGCGCCAGGTGTTCCGCCGCGTC
TCGGGAATCTAAATCTATCTGCCCGATGTGCTTACCCCCCCCCCATCTCC
CGTCTCTCGCCCTCTCTGTGTGTACCCCCTCGTGTTTTTTTTTTCGTTGA
ATACGCCCACCACCACCCGTATCGAAAACCACCGAAGGTGTTCGCGCCGA
ACGAGGTAACCGGTGCCTCTCAGTTCTGGTACCTCATGCACCAGATGCGT
AAGATGAAGAAGACCACCGGGGAGATCCTCGACATCGTGGAGGTGCGTTC
GTCTCTCGGCTGGCTGGCTGGCTGGCCGGCTGCCTGCCTGCCTGCCTGCC
TGCGGCTCGCTGATGGCGTTTGAGTCGGGGTGTATACGGTCGCACGGTGC
GGTGTTGTGTAGCAATCGTGTCGGGTGCAAGGAATATGGTGTGGTGTAGG
ATCCCATCCCGGCCAGGGTGGCGATTAATTCTGTTGTTAATTCTACAGAA
TCATGCAGCTTTGATGTTTTGATCAATGCAGTGATGCCGAGCATCGGGCA
CGCGCAGGTTTTGGCTCAGGAGTAGATGTTGGTTTTTCTGCGCCCAATTG
CCGCCGCCGCCGCCGTTGCCGCTGATTGTTGATGGGCACTTGTGCTCGAC
TCTACCTTTTTGCTTCCGCGCTCCGAATGCTGTGCTTGTGTTTCTGTTTT
CGTGACAACAGCTGACGGAGAAGAACGCTCGCATCATCAAGAACTACGGC
ATCTGGCTCCGTTACGACTCCCGCTCCGGCACGCACAACATGTACCGCGA
GTACAGGGACCTCACCCTGACCGGCGCCGTGGATCAGATGTGTGAGTACA
AATTTTTAGCTTGACTAGTAACAAGTTTTGTGTATTTTTCAACTCGCAGT
ACTCGGCTCGTTTGCTGTCGTTGCCGAAAACAGTTGGGAGGAGCTGTGTG
CGGACGGCTGCACACAAGCGCCGTTATTTCGTTCGGTCAGGGACATTATG
TGGTGTTTACGGTGGTTGCTAACGGTGCGGGCTGCACGCTGCAGAGCGGT
AGTGATGCGCTCCCCTTGCCTTGTGTTCCCGTTTGATTTGCTGTGTCAAG
GGCGAAGGACGGCACCGAAGAGAGTCATGTACCAGTGTGTCATCGCCACG
CCCATCGCGAACAATCTGTAGATTTGTATCGGCGATCAATCCGAGCAGGG
CTTGCGCGTTCAACGGCTGGTTTTGCGAGCGAAAAATAGAAAAGGAAGCT
GGTTCTTGTTCCGCCCGTTCGTCCCATATGGGGCAGTGCAGGAGTGACAG
TCTTGTCATTGATGGTGGAACTTTTTTACCTACAGCAGCAGTAGCACCGG
AGTTGGCCATCGTTGTCTGCTGATGTTTCGTGTCCCTCTCCCGCCATCCT
CCTGCGCCATTTTCGTCTCCCTCCGGGTCGTTGCTGCTGCTCTTGCTGTC
GCCTGTTCGGCGGTGCTGACTGCTGCTGTACGTTCGTAACCATGGCGTGA
CGCTTGCTCGGGCTGATGGAACGCCGACGATCTCGGCAAAAATGCCAACC
CTGGGGCTGCTCCTGCTGCTGCTGTATTTGCTCTCGGTCAATGACATGGT
TGTTGGGAGCAGACTCGGAGATGGCTGGCCGCCACCGGTGCCGCCCTCGC
TCCATCCAGATCATCCGCACGGGCATCGTTGCGGCGAAGGACACCAAGCG
CCCGGACGTGCAGCAGTTCCACGTGAGTATTTTTTTATTTTTGTCTGTTT
TTTTTTTTCGGAAGATGATTGTGTTTTTCAGAGCACGGGCTCCCTTCAAT
GATGGTTTTGACCTTCAAAGCTTGCGGGAGGACGGCTTGTTGTATGTAGC
CAAGACGCTACGGCTAGTGTTTCCACTCGTAGATTTCCCGCGGCAGCACA
ACGGAACAAGATCGCCCGTCTGTGGCGTCCACTTGCGTGTGTACGTGTAC
ACCTGGGGTTTCCACGGCAAAGACGATTTTGTCCATTGTGGTGTAGGCGA
AACTCAAGCGTAGAACTATTCATGTCCACGTGCCCCCACCTGCTGGTCGT
GCCGCCGGCCGCTTCGACGGCTTGGTCGTTCGTCCTGTTGGTGCGGGATG
CCGGTTCGGGGAGGGGGGGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGTTGCCTCTGGACAACGGCCAGGAAGTGATGGCACTGGCT
TTCGGTGGTGTTGGCGGTCTGTGTAGGTCACGGTTTCTGGACCTCCCGCT
TTTGCGGCGTTCGGCGGTTCTGTAAAGGGACGGGTTACGTTTCCCAGCAG
GAGAGGAGGGGGGCCGGGCAAAGATCATTTTGTTTGTCAGTGTTGATTTT
TGCCAGCTCGCCAAGTTGGGTGGGACCTGTGCGTCCAGCAGTCATTTGTG
TGTGCCATCTCTGCTTCATGCCTGGAGACAGAGATCATCTCGCGCGGCCC
AGGCGTGCTTTCTCGTACGTGACTGGTCGCCTCTCTTCCCCCTTTCGCGC
GGCCGTGTTCCTGGTTGTTCCGTGTCTCGCAGAACGCGAACATCAAGTTC
CCCCTCACTCACCGCCTCCCGCGCGCGCCGAAGAAGAAGTTCAGGACTAC
CTTCAAGGCGTCGCGTCCCACCACCTTCTTGGGCTAA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1237:7677..13263+

>mRNA_E-siliculosus-1a_F_contig1237.1478.1 ID=mRNA_E-siliculosus-1a_F_contig1237.1478.1|Name=mRNA_E-siliculosus-1a_F_contig1237.1478.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1068bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1237:7677..13263+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGTTGCCATGCGCCAGTACCAGGTGGTCGGCCGCAAGGCCGTCACGGA
GAAGGAGCCGAACCCGCCCGTATACCGGATGAAGATGGTTGCCATGCGCC
AGTACCAGGTGGTCGGCCGCAAGGCCGTCACGGAGAAGGAGCCGAACCCG
CCCGTATACCGGATGAAGGTGTTCGCGCCGAACGAGGTAACCGGTGCCTC
TCAGTTCTGGTACCTCATGCACCAGATGCGTAAGATGAAGAAGACCACCG
GGGAGATCCTCGACATCGTGGAGGTGTTCGCGCCGAACGAGGTAACCGGT
GCCTCTCAGTTCTGGTACCTCATGCACCAGATGCGTAAGATGAAGAAGAC
CACCGGGGAGATCCTCGACATCGTGGAGCTGACGGAGAAGAACGCTCGCA
TCATCAAGAACTACGGCATCTGGCTCCGTTACGACTCCCGCTCCGGCACG
CACAACATGTACCGCGAGTACAGGGACCTCACCCTGACCGGCGCCGTGGA
TCAGATGTCTGACGGAGAAGAACGCTCGCATCATCAAGAACTACGGCATC
TGGCTCCGTTACGACTCCCGCTCCGGCACGCACAACATGTACCGCGAGTA
CAGGGACCTCACCCTGACCGGCGCCGTGGATCAGATGTACTCGGAGATGG
CTGGCCGCCACCGGTGCCGCCCTCGCTCCATCCAGATCATCCGCACGGGC
ATCGTTGCGGCGAAGGACACCAAGCGCCCGGACGTGCAGCAGTTCCACAC
TCGGAGATGGCTGGCCGCCACCGGTGCCGCCCTCGCTCCATCCAGATCAT
CCGCACGGGCATCGTTGCGGCGAAGGACACCAAGCGCCCGGACGTGCAGC
AGTTCCACAACGCGAACATCAAGTTCCCCCTCACTCACCGCCTCCCGCGC
GCGCCGAAGAAGAAGTTCAGGACTACCTTCAAGGCGTCGCGTCCCACCAC
CTTCTTGGGCTAAAACGCGAACATCAAGTTCCCCCTCACTCACCGCCTCC
CGCGCGCGCCGAAGAAGAAGTTCAGGACTACCTTCAAGGCGTCGCGTCCC
ACCACCTTCTTGGGCTAA
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