prot_E-siliculosus-1a_F_contig12306.1448.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_E-siliculosus-1a_F_contig12306.1448.1
Unique Name	prot_E-siliculosus-1a_F_contig12306.1448.1
Type	polypeptide
Organism	Ectocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length	120

Homology

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BLAST of mRNA_E-siliculosus-1a_F_contig12306.1448.1 vs. uniprot
Match: D7FR30_ECTSI (Arp2/3 complex 34 kDa subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR30_ECTSI)

HSP 1 Score: 241 bits (616), Expect = 5.310e-80
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0

Query:    1 PQADRVTVIFAIDFTESDERAIAKSFLMEFVDAQRVANNSPPCTFTPDAPLELKSMPMPPSHTPVGFLSFVIFPQHVDRGRQEKTITLLTGFRNYLHYHLKATKTYMHMRMRKRVVGLLQ 120
            PQADRVTVIFAIDFTESDERAIAKSFLMEFVDAQRVANNSPPCTFTPDAPLELKSMPMPPSHTPVGFLSFVIFPQHVDRGRQEKTITLLTGFRNYLHYHLKATKTYMHMRMRKRVVGLLQ
Sbjct:   37 PQADRVTVIFAIDFTESDERAIAKSFLMEFVDAQRVANNSPPCTFTPDAPLELKSMPMPPSHTPVGFLSFVIFPQHVDRGRQEKTITLLTGFRNYLHYHLKATKTYMHMRMRKRVVGLLQ 156

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BLAST of mRNA_E-siliculosus-1a_F_contig12306.1448.1 vs. uniprot
Match: A0A6H5L1H1_9PHAE (Arp2/3 complex 34 kDa subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1H1_9PHAE)

HSP 1 Score: 241 bits (615), Expect = 4.460e-78
Identity = 119/120 (99.17%), Postives = 120/120 (100.00%), Query Frame = 0

Query:    1 PQADRVTVIFAIDFTESDERAIAKSFLMEFVDAQRVANNSPPCTFTPDAPLELKSMPMPPSHTPVGFLSFVIFPQHVDRGRQEKTITLLTGFRNYLHYHLKATKTYMHMRMRKRVVGLLQ 120
            PQADRVT+IFAIDFTESDERAIAKSFLMEFVDAQRVANNSPPCTFTPDAPLELKSMPMPPSHTPVGFLSFVIFPQHVDRGRQEKTITLLTGFRNYLHYHLKATKTYMHMRMRKRVVGLLQ
Sbjct:  163 PQADRVTIIFAIDFTESDERAIAKSFLMEFVDAQRVANNSPPCTFTPDAPLELKSMPMPPSHTPVGFLSFVIFPQHVDRGRQEKTITLLTGFRNYLHYHLKATKTYMHMRMRKRVVGLLQ 282

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BLAST of mRNA_E-siliculosus-1a_F_contig12306.1448.1 vs. uniprot
Match: A0A835ZH76_9STRA (Arp2/3 complex 34 kDa subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZH76_9STRA)

HSP 1 Score: 176 bits (445), Expect = 5.510e-54
Identity = 89/120 (74.17%), Postives = 98/120 (81.67%), Query Frame = 0

Query:    1 PQADRVTVIFAIDFTESDERAIAKSFLMEFVDAQRVANNSPPCTFTPDAPLELKSMPMPPSHTPVGFLSFVIFPQHVDRGRQEKTITLLTGFRNYLHYHLKATKTYMHMRMRKRVVGLLQ 120
            PQADRVTVIFA+DF E DERA+ K FLMEF DAQR ANN+PP  F  +APLEL+S  +     PVGFLSF+IFPQHV  GR E  +TLLTGFRNYLHYH+KATKTYMHMRMRKRVVGLLQ
Sbjct:   38 PQADRVTVIFALDFAEQDERALCKVFLMEFADAQRSANNAPPTNFALEAPLELRSARV--RGKPVGFLSFIIFPQHVQEGRLESCVTLLTGFRNYLHYHIKATKTYMHMRMRKRVVGLLQ 155

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BLAST of mRNA_E-siliculosus-1a_F_contig12306.1448.1 vs. uniprot
Match: A0A5D6XHZ0_9STRA (Arp2/3 complex 34 kDa subunit n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XHZ0_9STRA)

HSP 1 Score: 129 bits (324), Expect = 2.900e-34
Identity = 64/122 (52.46%), Postives = 88/122 (72.13%), Query Frame = 0

Query:    1 PQADRVTVIFAIDFTESDERAIAKSFLMEFVDAQRVANNSPPCTFTPDAPLELKSMP-MPPSHTPVGFLSFVIFPQHVDR-GRQEKTITLLTGFRNYLHYHLKATKTYMHMRMRKRVVGLLQ 120
            PQADR+ +++++ F +  ++AIA+ FL EFVD +R  NN+PP  F  D PLEL++ P +P S   VG+LS  IFP HVD   ++ K  +L+ G RNYLHYH+KA+KTY+H+RMRKRV  LLQ
Sbjct:  155 PQADRIVIVYSVCFDDKTDQAIARVFLQEFVDTRRTVNNAPPAAFGKDPPLELRNAPGLPTSSDLVGYLSLAIFPSHVDSPAKRAKAASLVQGLRNYLHYHIKASKTYLHIRMRKRVDLLLQ 276

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BLAST of mRNA_E-siliculosus-1a_F_contig12306.1448.1 vs. uniprot
Match: T0RSJ4_SAPDV (Arp2/3 complex 34 kDa subunit n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0RSJ4_SAPDV)

HSP 1 Score: 129 bits (323), Expect = 4.080e-34
Identity = 65/122 (53.28%), Postives = 89/122 (72.95%), Query Frame = 0

Query:    1 PQADRVTVIFAIDFTESDERAIAKSFLMEFVDAQRVANNSPPCTFTPDAPLELKSMP-MPPSHTPVGFLSFVIFPQHVDR-GRQEKTITLLTGFRNYLHYHLKATKTYMHMRMRKRVVGLLQ 120
            PQADR+ ++F++ F +  ++AIA+ FL EF +A+R  NN+PP +F  D PLEL+ +P +  S   VG+LSF IF  H+D   ++ K  TL+ GFRNYLHYH+KA+KTYMH+RMRKRV  LLQ
Sbjct:  155 PQADRIVIVFSVAFQDKTDQAIARIFLQEFAEARRHVNNAPPVSFGKDPPLELRGVPNLRQSTDHVGYLSFAIFKTHIDTDAKRAKACTLIQGFRNYLHYHIKASKTYMHIRMRKRVDLLLQ 276

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BLAST of mRNA_E-siliculosus-1a_F_contig12306.1448.1 vs. uniprot
Match: A0A067CQD1_SAPPC (Arp2/3 complex 34 kDa subunit n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CQD1_SAPPC)

HSP 1 Score: 128 bits (322), Expect = 5.750e-34
Identity = 65/122 (53.28%), Postives = 89/122 (72.95%), Query Frame = 0

Query:    1 PQADRVTVIFAIDFTESDERAIAKSFLMEFVDAQRVANNSPPCTFTPDAPLELKSMP-MPPSHTPVGFLSFVIFPQHVDR-GRQEKTITLLTGFRNYLHYHLKATKTYMHMRMRKRVVGLLQ 120
            PQADR+ ++F++ F +  ++AIA+ FL EF +A+R  NN+PP +F  D PLEL+ +P +  S   VG+LSF IF  H+D   ++ K  TL+ GFRNYLHYH+KA+KTYMH+RMRKRV  LLQ
Sbjct:  155 PQADRIVIVFSVAFQDKTDQAIARIFLQEFAEARRHVNNAPPVSFGKDPPLELRGVPNLRQSTDHVGYLSFAIFKTHIDSDAKRAKACTLVQGFRNYLHYHIKASKTYMHIRMRKRVDLLLQ 276

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BLAST of mRNA_E-siliculosus-1a_F_contig12306.1448.1 vs. uniprot
Match: A0A024U441_9STRA (Arp2/3 complex 34 kDa subunit n=4 Tax=Aphanomyces TaxID=100860 RepID=A0A024U441_9STRA)

HSP 1 Score: 127 bits (319), Expect = 1.610e-33
Identity = 64/122 (52.46%), Postives = 89/122 (72.95%), Query Frame = 0

Query:    1 PQADRVTVIFAIDFTESDERAIAKSFLMEFVDAQRVANNSPPCTFTPDAPLELKSMP-MPPSHTPVGFLSFVIFPQHVDR-GRQEKTITLLTGFRNYLHYHLKATKTYMHMRMRKRVVGLLQ 120
            PQ DR+ ++F++ F +  ++AIA+ FL EF +A+R  NN+PP +F  D PLEL+++  + P    VG+LSF IF  H+D   ++EK  TLL GFRNYLHYH+KA+KTY+H+RMRKRV  LLQ
Sbjct:  155 PQDDRIVIVFSVAFQDKTDQAIARVFLQEFAEARRHVNNAPPVSFGKDPPLELRAVSGLRPCADHVGYLSFAIFKSHIDTDAKREKACTLLQGFRNYLHYHIKASKTYLHIRMRKRVDLLLQ 276

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BLAST of mRNA_E-siliculosus-1a_F_contig12306.1448.1 vs. uniprot
Match: A0A0W8DBT4_PHYNI (Arp2/3 complex 34 kDa subunit n=7 Tax=Phytophthora TaxID=4783 RepID=A0A0W8DBT4_PHYNI)

HSP 1 Score: 124 bits (312), Expect = 1.490e-32
Identity = 65/123 (52.85%), Postives = 86/123 (69.92%), Query Frame = 0

Query:    1 PQADRVTVIFAIDFTESDERAIAKSFLMEFVDAQRVANNSPPCTFTPDAPLELKSMPMPPSHTP--VGFLSFVIFPQHVDRGRQE-KTITLLTGFRNYLHYHLKATKTYMHMRMRKRVVGLLQ 120
            PQADR+ +++++ F +  ++AIA+ FL EFVD +R  NN+PP  F  D PLEL+  P    H+P  VG+LS  IFP HVD   +  K  TL+ G RNYLHYH+KA+KTY+H+RMRKRV  LLQ
Sbjct:  148 PQADRIVIVYSVCFEDKTDQAIARVFLQEFVDTRRTVNNAPPVAFGKDPPLELRGAPGL-RHSPDLVGYLSLAIFPTHVDTTEKRVKAATLVQGLRNYLHYHIKASKTYLHIRMRKRVDLLLQ 269

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BLAST of mRNA_E-siliculosus-1a_F_contig12306.1448.1 vs. uniprot
Match: A0A484E080_BRELC (Arp2/3 complex 34 kDa subunit n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E080_BRELC)

HSP 1 Score: 124 bits (312), Expect = 1.730e-32
Identity = 64/122 (52.46%), Postives = 85/122 (69.67%), Query Frame = 0

Query:    1 PQADRVTVIFAIDFTESDERAIAKSFLMEFVDAQRVANNSPPCTFTPDAPLELKSMP-MPPSHTPVGFLSFVIFPQHVDRGRQE-KTITLLTGFRNYLHYHLKATKTYMHMRMRKRVVGLLQ 120
            PQADR+ +++++ F +  ++AIA+ FL EFVD +R  NN+PP  F  D PLEL+  P +  S   VG+LS  IFP HVD   +  K  TL+ G RNYLHYH+KA+KTY+H+RMRKRV  LLQ
Sbjct:  155 PQADRIVIVYSVCFDDKTDQAIARVFLQEFVDTRRTVNNAPPVAFGRDPPLELRGAPGLCQSPDLVGYLSLAIFPTHVDTAEKRIKAATLVQGLRNYLHYHIKASKTYLHIRMRKRVDLLLQ 276

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BLAST of mRNA_E-siliculosus-1a_F_contig12306.1448.1 vs. uniprot
Match: G4Z955_PHYSP (Arp2/3 complex 34 kDa subunit n=30 Tax=Peronosporaceae TaxID=4777 RepID=G4Z955_PHYSP)

HSP 1 Score: 124 bits (311), Expect = 2.430e-32
Identity = 64/122 (52.46%), Postives = 85/122 (69.67%), Query Frame = 0

Query:    1 PQADRVTVIFAIDFTESDERAIAKSFLMEFVDAQRVANNSPPCTFTPDAPLELKSMP-MPPSHTPVGFLSFVIFPQHVDRGRQE-KTITLLTGFRNYLHYHLKATKTYMHMRMRKRVVGLLQ 120
            PQADR+ +++++ F +  ++AIA+ FL EFVD +R  NN+PP  F  D PLEL+  P +  S   VG+LS  IFP HVD   +  K  TL+ G RNYLHYH+KA+KTY+H+RMRKRV  LLQ
Sbjct:  155 PQADRIVIVYSVCFDDKTDQAIARVFLQEFVDTRRTVNNAPPVAFGKDPPLELRGAPGLRNSPDLVGYLSIAIFPTHVDTTEKRIKAATLVQGLRNYLHYHIKASKTYLHIRMRKRVDLLLQ 276

The following BLAST results are available for this feature:

BLAST of mRNA_E-siliculosus-1a_F_contig12306.1448.1 vs. uniprot

BLAST of mRNA_E-siliculosus-1a_F_contig12306.1448.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FR30_ECTSI	5.310e-80	100.00	Arp2/3 complex 34 kDa subunit n=1 Tax=Ectocarpus s...	[more]
A0A6H5L1H1_9PHAE	4.460e-78	99.17	Arp2/3 complex 34 kDa subunit n=1 Tax=Ectocarpus s...	[more]
A0A835ZH76_9STRA	5.510e-54	74.17	Arp2/3 complex 34 kDa subunit n=1 Tax=Tribonema mi...	[more]
A0A5D6XHZ0_9STRA	2.900e-34	52.46	Arp2/3 complex 34 kDa subunit n=1 Tax=Pythium bras...	[more]
T0RSJ4_SAPDV	4.080e-34	53.28	Arp2/3 complex 34 kDa subunit n=1 Tax=Saprolegnia ...	[more]
A0A067CQD1_SAPPC	5.750e-34	53.28	Arp2/3 complex 34 kDa subunit n=3 Tax=Saprolegniac...	[more]
A0A024U441_9STRA	1.610e-33	52.46	Arp2/3 complex 34 kDa subunit n=4 Tax=Aphanomyces ...	[more]
A0A0W8DBT4_PHYNI	1.490e-32	52.85	Arp2/3 complex 34 kDa subunit n=7 Tax=Phytophthora...	[more]
A0A484E080_BRELC	1.730e-32	52.46	Arp2/3 complex 34 kDa subunit n=1 Tax=Bremia lactu...	[more]
G4Z955_PHYSP	2.430e-32	52.46	Arp2/3 complex 34 kDa subunit n=30 Tax=Peronospora...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007188	Actin-related protein 2/3 complex subunit 2	PFAM	PF04045	P34-Arc	coord: 1..119 e-value: 6.9E-41 score: 140.5
IPR007188	Actin-related protein 2/3 complex subunit 2	PANTHER	PTHR12058	ARP2/3 COMPLEX 34 KDA SUBUNIT	coord: 1..120
IPR034666	Arp2/3 complex subunit 2/4	GENE3D	3.30.1460.20		coord: 1..120 e-value: 8.1E-46 score: 157.7
IPR034666	Arp2/3 complex subunit 2/4	SUPERFAMILY	69645	Arp2/3 complex subunits	coord: 1..119
None	No IPR available	PANTHER	PTHR12058:SF0	ACTIN-RELATED PROTEIN 2/3 COMPLEX SUBUNIT 2	coord: 1..120

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E-siliculosus-1a_F_contig12306	contig	E-siliculosus-1a_F_contig12306:447..1468 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female	2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90	2022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_E-siliculosus-1a_F_contig12306.1448.1	mRNA_E-siliculosus-1a_F_contig12306.1448.1	Ectocarpus siliculosus Ec863f_EcPH12_90f female	mRNA	E-siliculosus-1a_F_contig12306 447..1468 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_E-siliculosus-1a_F_contig12306.1448.1 ID=prot_E-siliculosus-1a_F_contig12306.1448.1|Name=mRNA_E-siliculosus-1a_F_contig12306.1448.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=120bp
PQADRVTVIFAIDFTESDERAIAKSFLMEFVDAQRVANNSPPCTFTPDAP
LELKSMPMPPSHTPVGFLSFVIFPQHVDRGRQEKTITLLTGFRNYLHYHL
KATKTYMHMRMRKRVVGLLQ

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR034666	ARPC2/4
IPR007188	ARPC2