mRNA_E-siliculosus-1a_F_contig12306.1448.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig12306.1448.1
Unique NamemRNA_E-siliculosus-1a_F_contig12306.1448.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig12306.1448.1 vs. uniprot
Match: D7FR30_ECTSI (Arp2/3 complex 34 kDa subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR30_ECTSI)

HSP 1 Score: 241 bits (616), Expect = 5.310e-80
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 1 
Query:    1 PQADRVTVIFAIDFTESDERAIAKSFLMEFVDAQRVANNSPPCTFTPDAPLELKSMPMPPSHTPVGFLSFVIFPQHVDRGRQEKTITLLTGFRNYLHYHLKATKTYMHMRMRKRVVGLLQ 360
            PQADRVTVIFAIDFTESDERAIAKSFLMEFVDAQRVANNSPPCTFTPDAPLELKSMPMPPSHTPVGFLSFVIFPQHVDRGRQEKTITLLTGFRNYLHYHLKATKTYMHMRMRKRVVGLLQ
Sbjct:   37 PQADRVTVIFAIDFTESDERAIAKSFLMEFVDAQRVANNSPPCTFTPDAPLELKSMPMPPSHTPVGFLSFVIFPQHVDRGRQEKTITLLTGFRNYLHYHLKATKTYMHMRMRKRVVGLLQ 156
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BLAST of mRNA_E-siliculosus-1a_F_contig12306.1448.1 vs. uniprot
Match: A0A6H5L1H1_9PHAE (Arp2/3 complex 34 kDa subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1H1_9PHAE)

HSP 1 Score: 241 bits (615), Expect = 4.460e-78
Identity = 119/120 (99.17%), Postives = 120/120 (100.00%), Query Frame = 1 
Query:    1 PQADRVTVIFAIDFTESDERAIAKSFLMEFVDAQRVANNSPPCTFTPDAPLELKSMPMPPSHTPVGFLSFVIFPQHVDRGRQEKTITLLTGFRNYLHYHLKATKTYMHMRMRKRVVGLLQ 360
            PQADRVT+IFAIDFTESDERAIAKSFLMEFVDAQRVANNSPPCTFTPDAPLELKSMPMPPSHTPVGFLSFVIFPQHVDRGRQEKTITLLTGFRNYLHYHLKATKTYMHMRMRKRVVGLLQ
Sbjct:  163 PQADRVTIIFAIDFTESDERAIAKSFLMEFVDAQRVANNSPPCTFTPDAPLELKSMPMPPSHTPVGFLSFVIFPQHVDRGRQEKTITLLTGFRNYLHYHLKATKTYMHMRMRKRVVGLLQ 282
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BLAST of mRNA_E-siliculosus-1a_F_contig12306.1448.1 vs. uniprot
Match: A0A835ZH76_9STRA (Arp2/3 complex 34 kDa subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZH76_9STRA)

HSP 1 Score: 176 bits (445), Expect = 5.510e-54
Identity = 89/120 (74.17%), Postives = 98/120 (81.67%), Query Frame = 1 
Query:    1 PQADRVTVIFAIDFTESDERAIAKSFLMEFVDAQRVANNSPPCTFTPDAPLELKSMPMPPSHTPVGFLSFVIFPQHVDRGRQEKTITLLTGFRNYLHYHLKATKTYMHMRMRKRVVGLLQ 360
            PQADRVTVIFA+DF E DERA+ K FLMEF DAQR ANN+PP  F  +APLEL+S  +     PVGFLSF+IFPQHV  GR E  +TLLTGFRNYLHYH+KATKTYMHMRMRKRVVGLLQ
Sbjct:   38 PQADRVTVIFALDFAEQDERALCKVFLMEFADAQRSANNAPPTNFALEAPLELRSARV--RGKPVGFLSFIIFPQHVQEGRLESCVTLLTGFRNYLHYHIKATKTYMHMRMRKRVVGLLQ 155
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BLAST of mRNA_E-siliculosus-1a_F_contig12306.1448.1 vs. uniprot
Match: A0A5D6XHZ0_9STRA (Arp2/3 complex 34 kDa subunit n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XHZ0_9STRA)

HSP 1 Score: 129 bits (324), Expect = 2.900e-34
Identity = 64/122 (52.46%), Postives = 88/122 (72.13%), Query Frame = 1 
Query:    1 PQADRVTVIFAIDFTESDERAIAKSFLMEFVDAQRVANNSPPCTFTPDAPLELKSMP-MPPSHTPVGFLSFVIFPQHVDR-GRQEKTITLLTGFRNYLHYHLKATKTYMHMRMRKRVVGLLQ 360
            PQADR+ +++++ F +  ++AIA+ FL EFVD +R  NN+PP  F  D PLEL++ P +P S   VG+LS  IFP HVD   ++ K  +L+ G RNYLHYH+KA+KTY+H+RMRKRV  LLQ
Sbjct:  155 PQADRIVIVYSVCFDDKTDQAIARVFLQEFVDTRRTVNNAPPAAFGKDPPLELRNAPGLPTSSDLVGYLSLAIFPSHVDSPAKRAKAASLVQGLRNYLHYHIKASKTYLHIRMRKRVDLLLQ 276
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BLAST of mRNA_E-siliculosus-1a_F_contig12306.1448.1 vs. uniprot
Match: T0RSJ4_SAPDV (Arp2/3 complex 34 kDa subunit n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0RSJ4_SAPDV)

HSP 1 Score: 129 bits (323), Expect = 4.080e-34
Identity = 65/122 (53.28%), Postives = 89/122 (72.95%), Query Frame = 1 
Query:    1 PQADRVTVIFAIDFTESDERAIAKSFLMEFVDAQRVANNSPPCTFTPDAPLELKSMP-MPPSHTPVGFLSFVIFPQHVDR-GRQEKTITLLTGFRNYLHYHLKATKTYMHMRMRKRVVGLLQ 360
            PQADR+ ++F++ F +  ++AIA+ FL EF +A+R  NN+PP +F  D PLEL+ +P +  S   VG+LSF IF  H+D   ++ K  TL+ GFRNYLHYH+KA+KTYMH+RMRKRV  LLQ
Sbjct:  155 PQADRIVIVFSVAFQDKTDQAIARIFLQEFAEARRHVNNAPPVSFGKDPPLELRGVPNLRQSTDHVGYLSFAIFKTHIDTDAKRAKACTLIQGFRNYLHYHIKASKTYMHIRMRKRVDLLLQ 276
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BLAST of mRNA_E-siliculosus-1a_F_contig12306.1448.1 vs. uniprot
Match: A0A067CQD1_SAPPC (Arp2/3 complex 34 kDa subunit n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CQD1_SAPPC)

HSP 1 Score: 128 bits (322), Expect = 5.750e-34
Identity = 65/122 (53.28%), Postives = 89/122 (72.95%), Query Frame = 1 
Query:    1 PQADRVTVIFAIDFTESDERAIAKSFLMEFVDAQRVANNSPPCTFTPDAPLELKSMP-MPPSHTPVGFLSFVIFPQHVDR-GRQEKTITLLTGFRNYLHYHLKATKTYMHMRMRKRVVGLLQ 360
            PQADR+ ++F++ F +  ++AIA+ FL EF +A+R  NN+PP +F  D PLEL+ +P +  S   VG+LSF IF  H+D   ++ K  TL+ GFRNYLHYH+KA+KTYMH+RMRKRV  LLQ
Sbjct:  155 PQADRIVIVFSVAFQDKTDQAIARIFLQEFAEARRHVNNAPPVSFGKDPPLELRGVPNLRQSTDHVGYLSFAIFKTHIDSDAKRAKACTLVQGFRNYLHYHIKASKTYMHIRMRKRVDLLLQ 276
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BLAST of mRNA_E-siliculosus-1a_F_contig12306.1448.1 vs. uniprot
Match: A0A024U441_9STRA (Arp2/3 complex 34 kDa subunit n=4 Tax=Aphanomyces TaxID=100860 RepID=A0A024U441_9STRA)

HSP 1 Score: 127 bits (319), Expect = 1.610e-33
Identity = 64/122 (52.46%), Postives = 89/122 (72.95%), Query Frame = 1 
Query:    1 PQADRVTVIFAIDFTESDERAIAKSFLMEFVDAQRVANNSPPCTFTPDAPLELKSMP-MPPSHTPVGFLSFVIFPQHVDR-GRQEKTITLLTGFRNYLHYHLKATKTYMHMRMRKRVVGLLQ 360
            PQ DR+ ++F++ F +  ++AIA+ FL EF +A+R  NN+PP +F  D PLEL+++  + P    VG+LSF IF  H+D   ++EK  TLL GFRNYLHYH+KA+KTY+H+RMRKRV  LLQ
Sbjct:  155 PQDDRIVIVFSVAFQDKTDQAIARVFLQEFAEARRHVNNAPPVSFGKDPPLELRAVSGLRPCADHVGYLSFAIFKSHIDTDAKREKACTLLQGFRNYLHYHIKASKTYLHIRMRKRVDLLLQ 276
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BLAST of mRNA_E-siliculosus-1a_F_contig12306.1448.1 vs. uniprot
Match: A0A0W8DBT4_PHYNI (Arp2/3 complex 34 kDa subunit n=7 Tax=Phytophthora TaxID=4783 RepID=A0A0W8DBT4_PHYNI)

HSP 1 Score: 124 bits (312), Expect = 1.490e-32
Identity = 65/123 (52.85%), Postives = 86/123 (69.92%), Query Frame = 1 
Query:    1 PQADRVTVIFAIDFTESDERAIAKSFLMEFVDAQRVANNSPPCTFTPDAPLELKSMPMPPSHTP--VGFLSFVIFPQHVDRGRQE-KTITLLTGFRNYLHYHLKATKTYMHMRMRKRVVGLLQ 360
            PQADR+ +++++ F +  ++AIA+ FL EFVD +R  NN+PP  F  D PLEL+  P    H+P  VG+LS  IFP HVD   +  K  TL+ G RNYLHYH+KA+KTY+H+RMRKRV  LLQ
Sbjct:  148 PQADRIVIVYSVCFEDKTDQAIARVFLQEFVDTRRTVNNAPPVAFGKDPPLELRGAPGL-RHSPDLVGYLSLAIFPTHVDTTEKRVKAATLVQGLRNYLHYHIKASKTYLHIRMRKRVDLLLQ 269
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BLAST of mRNA_E-siliculosus-1a_F_contig12306.1448.1 vs. uniprot
Match: A0A484E080_BRELC (Arp2/3 complex 34 kDa subunit n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E080_BRELC)

HSP 1 Score: 124 bits (312), Expect = 1.730e-32
Identity = 64/122 (52.46%), Postives = 85/122 (69.67%), Query Frame = 1 
Query:    1 PQADRVTVIFAIDFTESDERAIAKSFLMEFVDAQRVANNSPPCTFTPDAPLELKSMP-MPPSHTPVGFLSFVIFPQHVDRGRQE-KTITLLTGFRNYLHYHLKATKTYMHMRMRKRVVGLLQ 360
            PQADR+ +++++ F +  ++AIA+ FL EFVD +R  NN+PP  F  D PLEL+  P +  S   VG+LS  IFP HVD   +  K  TL+ G RNYLHYH+KA+KTY+H+RMRKRV  LLQ
Sbjct:  155 PQADRIVIVYSVCFDDKTDQAIARVFLQEFVDTRRTVNNAPPVAFGRDPPLELRGAPGLCQSPDLVGYLSLAIFPTHVDTAEKRIKAATLVQGLRNYLHYHIKASKTYLHIRMRKRVDLLLQ 276
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BLAST of mRNA_E-siliculosus-1a_F_contig12306.1448.1 vs. uniprot
Match: G4Z955_PHYSP (Arp2/3 complex 34 kDa subunit n=30 Tax=Peronosporaceae TaxID=4777 RepID=G4Z955_PHYSP)

HSP 1 Score: 124 bits (311), Expect = 2.430e-32
Identity = 64/122 (52.46%), Postives = 85/122 (69.67%), Query Frame = 1 
Query:    1 PQADRVTVIFAIDFTESDERAIAKSFLMEFVDAQRVANNSPPCTFTPDAPLELKSMP-MPPSHTPVGFLSFVIFPQHVDRGRQE-KTITLLTGFRNYLHYHLKATKTYMHMRMRKRVVGLLQ 360
            PQADR+ +++++ F +  ++AIA+ FL EFVD +R  NN+PP  F  D PLEL+  P +  S   VG+LS  IFP HVD   +  K  TL+ G RNYLHYH+KA+KTY+H+RMRKRV  LLQ
Sbjct:  155 PQADRIVIVYSVCFDDKTDQAIARVFLQEFVDTRRTVNNAPPVAFGKDPPLELRGAPGLRNSPDLVGYLSIAIFPTHVDTTEKRIKAATLVQGLRNYLHYHIKASKTYLHIRMRKRVDLLLQ 276
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig12306.1448.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FR30_ECTSI5.310e-80100.00Arp2/3 complex 34 kDa subunit n=1 Tax=Ectocarpus s... [more]
A0A6H5L1H1_9PHAE4.460e-7899.17Arp2/3 complex 34 kDa subunit n=1 Tax=Ectocarpus s... [more]
A0A835ZH76_9STRA5.510e-5474.17Arp2/3 complex 34 kDa subunit n=1 Tax=Tribonema mi... [more]
A0A5D6XHZ0_9STRA2.900e-3452.46Arp2/3 complex 34 kDa subunit n=1 Tax=Pythium bras... [more]
T0RSJ4_SAPDV4.080e-3453.28Arp2/3 complex 34 kDa subunit n=1 Tax=Saprolegnia ... [more]
A0A067CQD1_SAPPC5.750e-3453.28Arp2/3 complex 34 kDa subunit n=3 Tax=Saprolegniac... [more]
A0A024U441_9STRA1.610e-3352.46Arp2/3 complex 34 kDa subunit n=4 Tax=Aphanomyces ... [more]
A0A0W8DBT4_PHYNI1.490e-3252.85Arp2/3 complex 34 kDa subunit n=7 Tax=Phytophthora... [more]
A0A484E080_BRELC1.730e-3252.46Arp2/3 complex 34 kDa subunit n=1 Tax=Bremia lactu... [more]
G4Z955_PHYSP2.430e-3252.46Arp2/3 complex 34 kDa subunit n=30 Tax=Peronospora... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig12306contigE-siliculosus-1a_F_contig12306:447..1468 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size360
Model size360
Exons3
Ec32 orthologEc-09_003710.1
Ec32 ortholog descriptionActin-related protein 2/3 complex subunit ARPC2 or p34-Arc (Arp2/3 complex 34 kDa subunit)
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko04131,ko04812
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.E
EggNOG OGsCOG4690@1,KOG2826@2759
EggNOG free text desc.Arp2/3 complex-mediated actin nucleation
GOsGO:0000001,GO:0000147,GO:0000226,GO:0000302,GO:0000902,GO:0000904,GO:0001667,GO:0001726,GO:0002009,GO:0002102,GO:0002252,GO:0002253,GO:0002376,GO:0002429,GO:0002431,GO:0002433,GO:0002682,GO:0002684,GO:0002757,GO:0002764,GO:0002768,GO:0003674,GO:0003779,GO:0005102,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005829,GO:0005856,GO:0005884,GO:0005885,GO:0005886,GO:0005912,GO:0005924,GO:0005925,GO:0005938,GO:0006810,GO:0006887,GO:0006897,GO:0006898,GO:0006909,GO:0006928,GO:0006950,GO:0006979,GO:0006996,GO:0007005,GO:0007010,GO:0007015,GO:0007017,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007275,GO:0008064,GO:0008092,GO:0008150,GO:0008154,GO:0008360,GO:0009636,GO:0009653,GO:0009719,GO:0009790,GO:0009888,GO:0009986,GO:0009987,GO:0010026,GO:0010033,GO:0010035,GO:0010090,GO:0010243,GO:0010591,GO:0010592,GO:0010631,GO:0010638,GO:0010720,GO:0010769,GO:0010770,GO:0010810,GO:0010811,GO:0012505,GO:0012506,GO:0014070,GO:0014910,GO:0014911,GO:0015629,GO:0016020,GO:0016043,GO:0016192,GO:0016331,GO:0016477,GO:0019894,GO:0019899,GO:0022411,GO:0022603,GO:0022604,GO:0022607,GO:0023052,GO:0030027,GO:0030029,GO:0030030,GO:0030031,GO:0030036,GO:0030041,GO:0030042,GO:0030054,GO:0030055,GO:0030139,GO:0030141,GO:0030154,GO:0030155,GO:0030175,GO:0030334,GO:0030335,GO:0030424,GO:0030425,GO:0030426,GO:0030427,GO:0030479,GO:0030659,GO:0030666,GO:0030670,GO:0030832,GO:0030833,GO:0030834,GO:0030838,GO:0030863,GO:0030864,GO:0030865,GO:0030866,GO:0031090,GO:0031143,GO:0031252,GO:0031253,GO:0031256,GO:0031334,GO:0031344,GO:0031346,GO:0031410,GO:0031941,GO:0031982,GO:0032271,GO:0032273,GO:0032386,GO:0032388,GO:0032501,GO:0032502,GO:0032535,GO:0032587,GO:0032879,GO:0032880,GO:0032940,GO:0032956,GO:0032970,GO:0032984,GO:0032989,GO:0032991,GO:0033043,GO:0033157,GO:0033267,GO:0033554,GO:0034021,GO:0034314,GO:0034599,GO:0034614,GO:0034622,GO:0035254,GO:0035556,GO:0035650,GO:0035690,GO:0036119,GO:0036120,GO:0036194,GO:0036195,GO:0036477,GO:0038093,GO:0038094,GO:0038096,GO:0040011,GO:0040012,GO:0040017,GO:0042221,GO:0042493,GO:0042542,GO:0042995,GO:0043005,GO:0043025,GO:0043197,GO:0043198,GO:0043204,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043232,GO:0043244,GO:0043254,GO:0043624,GO:0043679,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044297,GO:0044306,GO:0044309,GO:0044396,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044433,GO:0044444,GO:0044446,GO:0044448,GO:0044456,GO:0044459,GO:0044463,GO:0044464,GO:0044877,GO:0045010,GO:0045202,GO:0045335,GO:0045472,GO:0045595,GO:0045597,GO:0045785,GO:0046677,GO:0046903,GO:0048013,GO:0048308,GO:0048311,GO:0048468,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048598,GO:0048729,GO:0048856,GO:0048869,GO:0048870,GO:0050776,GO:0050778,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051015,GO:0051049,GO:0051050,GO:0051094,GO:0051117,GO:0051128,GO:0051130,GO:0051179,GO:0051222,GO:0051223,GO:0051234,GO:0051258,GO:0051261,GO:0051270,GO:0051272,GO:0051489,GO:0051491,GO:0051493,GO:0051495,GO:0051640,GO:0051641,GO:0051646,GO:0051674,GO:0051716,GO:0060284,GO:0060341,GO:0060429,GO:0060491,GO:0061024,GO:0061645,GO:0061825,GO:0061826,GO:0061827,GO:0061830,GO:0061834,GO:0061835,GO:0065003,GO:0065007,GO:0065008,GO:0070161,GO:0070201,GO:0070301,GO:0070358,GO:0070528,GO:0070848,GO:0070849,GO:0070887,GO:0071236,GO:0071310,GO:0071362,GO:0071363,GO:0071364,GO:0071407,GO:0071417,GO:0071437,GO:0071495,GO:0071801,GO:0071803,GO:0071840,GO:0071933,GO:0071944,GO:0072752,GO:0090066,GO:0090087,GO:0090130,GO:0090132,GO:0090313,GO:0090314,GO:0090316,GO:0090558,GO:0090626,GO:0090723,GO:0090725,GO:0097223,GO:0097237,GO:0097305,GO:0097306,GO:0097327,GO:0097435,GO:0097440,GO:0097447,GO:0097458,GO:0097708,GO:0098588,GO:0098590,GO:0098657,GO:0098793,GO:0098794,GO:0098805,GO:0098858,GO:0099080,GO:0099081,GO:0099503,GO:0099512,GO:0099513,GO:0099568,GO:0110053,GO:0120025,GO:0120032,GO:0120034,GO:0120035,GO:0120038,GO:0150034,GO:1900024,GO:1900026,GO:1901355,GO:1901654,GO:1901655,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1901879,GO:1902115,GO:1902117,GO:1902743,GO:1902745,GO:1902903,GO:1902905,GO:1903533,GO:1903827,GO:1903829,GO:1904951,GO:1905475,GO:1905477,GO:1905924,GO:1905926,GO:1990089,GO:1990090,GO:2000145,GO:2000147,GO:2000249,GO:2000251,GO:2000812,GO:2000814
KEGG Pathwayko04144,ko04666,ko04810,ko05100,ko05130,ko05131,ko05132,map04144,map04666,map04810,map05100,map05130,map05131,map05132
KEGG koko:K05758
Preferred nameARPC2
Seed eggNOG ortholog2880.D7FR30
Seed ortholog evalue4.1e-62
Seed ortholog score243.8
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig12306.1448.1prot_E-siliculosus-1a_F_contig12306.1448.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig12306 447..1468 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927749.7326035-CDS-E-siliculosus-1a_F_contig12306:446..5951622927749.7326035-CDS-E-siliculosus-1a_F_contig12306:446..595Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12306 447..595 -
1696318665.781635-CDS-E-siliculosus-1a_F_contig12306:446..5951696318665.781635-CDS-E-siliculosus-1a_F_contig12306:446..595Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12306 447..595 -
1622927749.7467551-CDS-E-siliculosus-1a_F_contig12306:884..10231622927749.7467551-CDS-E-siliculosus-1a_F_contig12306:884..1023Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12306 885..1023 -
1696318665.7973437-CDS-E-siliculosus-1a_F_contig12306:884..10231696318665.7973437-CDS-E-siliculosus-1a_F_contig12306:884..1023Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12306 885..1023 -
1622927749.7635162-CDS-E-siliculosus-1a_F_contig12306:1396..14681622927749.7635162-CDS-E-siliculosus-1a_F_contig12306:1396..1468Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12306 1397..1468 -
1696318665.8067102-CDS-E-siliculosus-1a_F_contig12306:1396..14681696318665.8067102-CDS-E-siliculosus-1a_F_contig12306:1396..1468Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12306 1397..1468 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig12306.1448.1

>prot_E-siliculosus-1a_F_contig12306.1448.1 ID=prot_E-siliculosus-1a_F_contig12306.1448.1|Name=mRNA_E-siliculosus-1a_F_contig12306.1448.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=120bp
PQADRVTVIFAIDFTESDERAIAKSFLMEFVDAQRVANNSPPCTFTPDAP
LELKSMPMPPSHTPVGFLSFVIFPQHVDRGRQEKTITLLTGFRNYLHYHL
KATKTYMHMRMRKRVVGLLQ
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mRNA from alignment at E-siliculosus-1a_F_contig12306:447..1468-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig12306.1448.1 ID=mRNA_E-siliculosus-1a_F_contig12306.1448.1|Name=mRNA_E-siliculosus-1a_F_contig12306.1448.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1022bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12306:447..1468- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CCTCAGGCGGATCGCGTCACGGTTATCTTCGCGATCGATTTCACGGAATC
TGACGAGAGGGCTATTGCCAAGGTCAGCGGACATGCAACATTACTCGCGA
TGAAAAAATATACCATCATTCGCTTATAGGTCATCGTAAAGTTGAAATTT
CGATTGTTTTCCCGCTTTGTAAACAATACGTGTGTTCCAGTGCCATACGT
GATCGGAATCTTGAAATACTGTTGGGCTATGCTCTCACTTTTTGTTGCAT
CAGGCGTTCCGCGTTTTGTTGTGAGTGCGTGCCTGTTTTTCAAAAGTCGC
CGCTGTGTGATTTTTTTTTTTTTTATCCCGTGGCGTACATGTATCGTAGA
TGGTTGTGTTATTATCGATCTTTCCCCCCTCTCCTACAGCGACTGCCCTT
TCAATCGGGTTTCGCTCCCCCCCCCTACTACGGCTGCCCTCTCAGTCCTT
CCTAATGGAGTTCGTGGACGCCCAGCGAGTGGCCAACAACTCCCCGCCGT
GCACGTTCACGCCCGACGCGCCCCTGGAGCTCAAGAGCATGCCCATGCCG
CCGAGCCACACGCCTGTGGGCTTTCTTAGTTTCGGTGAGAGTCCTTCTTC
TATTTTTTCTTCTTTCAGTTGGGTTGATGTCGAGCGTATCATGAAGGGCT
GGGCCGATCTACGGTAGGTGACAGAGGATACCACACGCACACACCCTGGC
AGCCGCACTGAGACTGACTGGTCAGCCGGTTAGCGCGGTGGATGCTTTTA
GGAACGACACATTGACGGAACAATCGTTTTGAAGCAACCTAACCGAAGAA
CTGGTGGCTCGCTACGTGCGCGTGCGTGATGATGGAAAATTACTGGAAAA
TTCCTGGAAATTTTCCGGGGCAGTGATCTTCCCGCAGCACGTCGACAGGG
GCCGGCAGGAGAAGACGATAACGCTTCTCACGGGGTTCCGCAACTACCTG
CACTACCACCTCAAGGCAACCAAGACCTACATGCACATGCGCATGCGGAA
AAGAGTGGTCGGCCTGCTGCAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig12306:447..1468-

>mRNA_E-siliculosus-1a_F_contig12306.1448.1 ID=mRNA_E-siliculosus-1a_F_contig12306.1448.1|Name=mRNA_E-siliculosus-1a_F_contig12306.1448.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=720bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12306:447..1468- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CCTCAGGCGGATCGCGTCACGGTTATCTTCGCGATCGATTTCACGGAATC
TGACGAGAGGGCTATTGCCAAGCCTCAGGCGGATCGCGTCACGGTTATCT
TCGCGATCGATTTCACGGAATCTGACGAGAGGGCTATTGCCAAGTCCTTC
CTAATGGAGTTCGTGGACGCCCAGCGAGTGGCCAACAACTCCCCGCCGTG
CACGTTCACGCCCGACGCGCCCCTGGAGCTCAAGAGCATGCCCATGCCGC
CGAGCCACACGCCTGTGGGCTTTCTTAGTTTCGTCCTTCCTAATGGAGTT
CGTGGACGCCCAGCGAGTGGCCAACAACTCCCCGCCGTGCACGTTCACGC
CCGACGCGCCCCTGGAGCTCAAGAGCATGCCCATGCCGCCGAGCCACACG
CCTGTGGGCTTTCTTAGTTTCGTGATCTTCCCGCAGCACGTCGACAGGGG
CCGGCAGGAGAAGACGATAACGCTTCTCACGGGGTTCCGCAACTACCTGC
ACTACCACCTCAAGGCAACCAAGACCTACATGCACATGCGCATGCGGAAA
AGAGTGGTCGGCCTGCTGCAGTGATCTTCCCGCAGCACGTCGACAGGGGC
CGGCAGGAGAAGACGATAACGCTTCTCACGGGGTTCCGCAACTACCTGCA
CTACCACCTCAAGGCAACCAAGACCTACATGCACATGCGCATGCGGAAAA
GAGTGGTCGGCCTGCTGCAG
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