prot_E-siliculosus-1a_F_contig1225.1417.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig1225.1417.1
Unique Nameprot_E-siliculosus-1a_F_contig1225.1417.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length335
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1225.1417.1 vs. uniprot
Match: D7G502_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G502_ECTSI)

HSP 1 Score: 600 bits (1546), Expect = 1.770e-215
Identity = 313/331 (94.56%), Postives = 317/331 (95.77%), Query Frame = 0 
Query:    1 MRTCVLSAALLFLGGAEGFITSLPRLPTRDIAPTPGRCRVPRLALTPPRKPNTGAGAGSAAAGGDDNGGANDVLKSTSGITRAPLRITPNFQPQEKRRPKTFVDKDITYGAFLTEESFDIAAMAWEEFSDFVRRTVERNLNGAQFDFDTRQWSSSIRKWWSRAVEMDVQAKADLFRLYDSSVGQRDAWGNQALKVDARVEDEWDSIYVDCQDGADVDFQDWSFDSSISGGVEGAATGSDVTGSRLSGPSSEALPSSLRKEGGGWGASPGSASTGGSRSALMAAMDAFQEEEEXXXXXEEGTGSEGFDDEEIIDCAIRGRWTFTNNDDPPHF 331
            MRTC+LSAALLFLGGA+GFITSLPRLPTRDI PTPGRCRVPRLALTPPRKPNTGAGAGSAAAGGDDNGGANDVLKSTSGITRAPLRITPNFQPQEKRRPK  VDKD+TYGAFLTEESFDIAAMAWEEFSDF+RRTVERNLNGAQFDFDTRQWSSSIRKWWSRAVEMDVQAKADLFRLYDSSVGQRDA GNQALKVDARVEDEWDSIYVDCQD ADVDFQDWSFDSSISGGVEGAATGSDVTG R S  SSEALPSSLRKEGGGWGASPGSASTGGSRSALMAAMDAFQEE  XXXXX EGTGSEGFDDEEIIDCAIRGRWTFTNNDDP  F
Sbjct:    1 MRTCLLSAALLFLGGAQGFITSLPRLPTRDITPTPGRCRVPRLALTPPRKPNTGAGAGSAAAGGDDNGGANDVLKSTSGITRAPLRITPNFQPQEKRRPKFNVDKDVTYGAFLTEESFDIAAMAWEEFSDFLRRTVERNLNGAQFDFDTRQWSSSIRKWWSRAVEMDVQAKADLFRLYDSSVGQRDARGNQALKVDARVEDEWDSIYVDCQDVADVDFQDWSFDSSISGGVEGAATGSDVTGWRSSESSSEALPSSLRKEGGGWGASPGSASTGGSRSALMAAMDAFQEEXXXXXXXXEGTGSEGFDDEEIIDCAIRGRWTFTNNDDPGCF 331
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BLAST of mRNA_E-siliculosus-1a_F_contig1225.1417.1 vs. uniprot
Match: A0A836CHX3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHX3_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 9.900e-14
Identity = 42/104 (40.38%), Postives = 58/104 (55.77%), Query Frame = 0 
Query:   84 PLRITPNFQPQEKRRPK---TFVDKDI-TYGAFLTEESFDI-----AAMAWEEFSDFVRRTVERNLNGAQFDFDTRQWSSSIRKWWSRAVEMDVQAKADLFRLY 178
            PLRI  N  P+    P+      +++  TY    T +  ++     AAMA  EF D+V RT+ RNL G  F+FDTRQW +S+ KWW RA+E D  A+ +  R Y
Sbjct:   67 PLRIMANLSPRSSGGPRGMRNMQEREFSTYQNAATVDRLNLHFEPMAAMACAEFKDWVARTLARNLEGHAFEFDTRQWQTSVAKWWGRALEADETARLEFARQY 170
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1225.1417.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G502_ECTSI1.770e-21594.56Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CHX3_9STRA9.900e-1440.38Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 19..334
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 14..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..13
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..18
score: 0.806

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1225contigE-siliculosus-1a_F_contig1225:15321..18773 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1225.1417.1mRNA_E-siliculosus-1a_F_contig1225.1417.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig1225 15154..19712 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig1225.1417.1 ID=prot_E-siliculosus-1a_F_contig1225.1417.1|Name=mRNA_E-siliculosus-1a_F_contig1225.1417.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=335bp
MRTCVLSAALLFLGGAEGFITSLPRLPTRDIAPTPGRCRVPRLALTPPRK
PNTGAGAGSAAAGGDDNGGANDVLKSTSGITRAPLRITPNFQPQEKRRPK
TFVDKDITYGAFLTEESFDIAAMAWEEFSDFVRRTVERNLNGAQFDFDTR
QWSSSIRKWWSRAVEMDVQAKADLFRLYDSSVGQRDAWGNQALKVDARVE
DEWDSIYVDCQDGADVDFQDWSFDSSISGGVEGAATGSDVTGSRLSGPSS
EALPSSLRKEGGGWGASPGSASTGGSRSALMAAMDAFQEEEEAEEGEEEG
TGSEGFDDEEIIDCAIRGRWTFTNNDDPPHFSPQ*
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