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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1225.1417.1 vs. uniprot
Match: D7G502_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G502_ECTSI) HSP 1 Score: 600 bits (1546), Expect = 1.580e-209 Identity = 313/331 (94.56%), Postives = 317/331 (95.77%), Query Frame = 3
Query: 168 MRTCVLSAALLFLGGAEGFITSLPRLPTRDIAPTPGRCRVPRLALTPPRKPNTGAGAGSAAAGGDDNGGANDVLKSTSGITRAPLRITPNFQPQEKRRPKTFVDKDITYGAFLTEESFDIAAMAWEEFSDFVRRTVERNLNGAQFDFDTRQWSSSIRKWWSRAVEMDVQAKADLFRLYDSSVGQRDAWGNQALKVDARVEDEWDSIYVDCQDGADVDFQDWSFDSSISGGVEGAATGSDVTGSRLSGPSSEALPSSLRKEGGGWGASPGSASTGGSRSALMAAMDAFQEEEEXXXXXEEGTGSEGFDDEEIIDCAIRGRWTFTNNDDPPHF 1160
MRTC+LSAALLFLGGA+GFITSLPRLPTRDI PTPGRCRVPRLALTPPRKPNTGAGAGSAAAGGDDNGGANDVLKSTSGITRAPLRITPNFQPQEKRRPK VDKD+TYGAFLTEESFDIAAMAWEEFSDF+RRTVERNLNGAQFDFDTRQWSSSIRKWWSRAVEMDVQAKADLFRLYDSSVGQRDA GNQALKVDARVEDEWDSIYVDCQD ADVDFQDWSFDSSISGGVEGAATGSDVTG R S SSEALPSSLRKEGGGWGASPGSASTGGSRSALMAAMDAFQEE XXXXX EGTGSEGFDDEEIIDCAIRGRWTFTNNDDP F
Sbjct: 1 MRTCLLSAALLFLGGAQGFITSLPRLPTRDITPTPGRCRVPRLALTPPRKPNTGAGAGSAAAGGDDNGGANDVLKSTSGITRAPLRITPNFQPQEKRRPKFNVDKDVTYGAFLTEESFDIAAMAWEEFSDFLRRTVERNLNGAQFDFDTRQWSSSIRKWWSRAVEMDVQAKADLFRLYDSSVGQRDARGNQALKVDARVEDEWDSIYVDCQDVADVDFQDWSFDSSISGGVEGAATGSDVTGWRSSESSSEALPSSLRKEGGGWGASPGSASTGGSRSALMAAMDAFQEEXXXXXXXXEGTGSEGFDDEEIIDCAIRGRWTFTNNDDPGCF 331
BLAST of mRNA_E-siliculosus-1a_F_contig1225.1417.1 vs. uniprot
Match: A0A836CHX3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHX3_9STRA) HSP 1 Score: 80.1 bits (196), Expect = 4.870e-13 Identity = 42/104 (40.38%), Postives = 58/104 (55.77%), Query Frame = 3
Query: 417 PLRITPNFQPQEKRRPK---TFVDKDI-TYGAFLTEESFDI-----AAMAWEEFSDFVRRTVERNLNGAQFDFDTRQWSSSIRKWWSRAVEMDVQAKADLFRLY 701
PLRI N P+ P+ +++ TY T + ++ AAMA EF D+V RT+ RNL G F+FDTRQW +S+ KWW RA+E D A+ + R Y
Sbjct: 67 PLRIMANLSPRSSGGPRGMRNMQEREFSTYQNAATVDRLNLHFEPMAAMACAEFKDWVARTLARNLEGHAFEFDTRQWQTSVAKWWGRALEADETARLEFARQY 170
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 1 |
| Cds size | 1005 |
| Model size | 2111 |
| Exons | 4 |
| Ec32 ortholog | Ec-04_002390.1 |
| Ec32 ortholog description | expressed unknown protein |
| Hectar predicted targeting category | signal peptide |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927743.9868824-UTR-E-siliculosus-1a_F_contig1225:15153..15320 | 1622927743.9868824-UTR-E-siliculosus-1a_F_contig1225:15153..15320 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | UTR | E-siliculosus-1a_F_contig1225 15154..15320 + |
| 1696318663.8260226-UTR-E-siliculosus-1a_F_contig1225:15153..15320 | 1696318663.8260226-UTR-E-siliculosus-1a_F_contig1225:15153..15320 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | UTR | E-siliculosus-1a_F_contig1225 15154..15320 + |
| 1622927744.0606985-UTR-E-siliculosus-1a_F_contig1225:18773..19712 | 1622927744.0606985-UTR-E-siliculosus-1a_F_contig1225:18773..19712 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | UTR | E-siliculosus-1a_F_contig1225 18774..19712 + |
| 1696318663.8706725-UTR-E-siliculosus-1a_F_contig1225:18773..19712 | 1696318663.8706725-UTR-E-siliculosus-1a_F_contig1225:18773..19712 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | UTR | E-siliculosus-1a_F_contig1225 18774..19712 + |
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1225.1417.1 >prot_E-siliculosus-1a_F_contig1225.1417.1 ID=prot_E-siliculosus-1a_F_contig1225.1417.1|Name=mRNA_E-siliculosus-1a_F_contig1225.1417.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=335bp
MRTCVLSAALLFLGGAEGFITSLPRLPTRDIAPTPGRCRVPRLALTPPRK
PNTGAGAGSAAAGGDDNGGANDVLKSTSGITRAPLRITPNFQPQEKRRPK
TFVDKDITYGAFLTEESFDIAAMAWEEFSDFVRRTVERNLNGAQFDFDTR
QWSSSIRKWWSRAVEMDVQAKADLFRLYDSSVGQRDAWGNQALKVDARVE
DEWDSIYVDCQDGADVDFQDWSFDSSISGGVEGAATGSDVTGSRLSGPSS
EALPSSLRKEGGGWGASPGSASTGGSRSALMAAMDAFQEEEEAEEGEEEG
TGSEGFDDEEIIDCAIRGRWTFTNNDDPPHFSPQ* back to topmRNA from alignment at E-siliculosus-1a_F_contig1225:15154..19712+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig1225.1417.1 ID=mRNA_E-siliculosus-1a_F_contig1225.1417.1|Name=mRNA_E-siliculosus-1a_F_contig1225.1417.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4559bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1225:15154..19712+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GCCACATGGTAAGCAGGCACGTGCCTTCCCGCCAAGAAACCGCGACCTCA
TCTCCGCCTCCCTCCCTCCCTCTCACTCGCTCTCTACCTGGCACAACTCA
GCCTCTTCGTTGGTAGTTTGGCGCTGCTTTGCTGTGGGGCCGCGGGGGCA
AAACCTAGCAAGAAAAAATGAGAACGTGCGTGCTGTCGGCGGCGCTGCTG
TTCCTTGGAGGAGCAGAAGGATTCATCACCAGCCTGCCGAGATTACCCAC
TCGTGACATCGCTCCCACGCCCGGGCGATGTAGAGTACCACGACTGGCGC
TGACACCACCCCGAAAGCCCAATACTGGGGCGGGTGCCGGGTCTGCTGCT
GCCGGGGGCGATGACAATGGCGGGGCGAACGATGTGTTGAAATCGACCAG
CGGCATCACCAGAGCGCCTCTCCGGATAACTCCCAACTTTCAGCCCCAGG
AGAAGCGGAGGCCAAAGACCTTCGTAGATAAGGACATCACCTATGGGGCG
TTCTTGACGGAAGAGAGCTTTGATATCGCCGGTGAGTCGACAGAGTTTCC
TCGACTTGAAAAACGCGTGTGTTGATATTTTGACAAAATTCTGTGTCAAG
CGCACTGACTGCAACTTGGTCGTTCCTGACGTGCCGCCCTCGTGTTCGTA
GAAGTACTGTAGTACGTACGCGAATGCAACCGCCAAACCCGAGCATCGGG
AAAGGGGGCGAATTGTTGCAAATACATCGCCGAGGCTGGGCTTACACTCG
GCGATATACTACCAATGCGCGCAAGAGCAAGAGCTCCAGGAGCTTGTTTT
TGTACCCTTGGGTGTACCCTGCTGGAAGACGTAACGATATCTCTCTGCGC
CCACAACAAGAAAGTGTTGACTCGGGTACGATGAAGTAGGACTACTGCTG
TATACATACATCTCGCGTAGGACAGAAACACATGCGTTGAAGGTCGATGG
GCTTGTCAAAAGATTCTCTGAGAGTGGGCATTGCAGCATCGCATGTCGCC
CTATTACCATGATCTGAGAGTAACGTTTATGCATTACTTCTTTAATGATG
GTGTTATCTAATGTAGGTCGGTATGTTGACTTGTCGTTTACTGCTGTGCC
CACCCTTTTGTTGACAAACACCCAGAGAATCAGTCGCTCCTAAGCCCCAA
CGGACGGAAGTAGTATGTATCGAACCTCTCGAAATACCAGGAATACCGAT
GAAAAGACTTCACACCTATCTCGTTCGACTGTGGGTAGTCGATGTCTTGA
ACGGGTAGTCTGCGTGTGTAGCATGTTTTTCCTAGTACACAGGGCAAGAA
GAATGGAGTTGGTGGAAACCAGCGAAACAGACTCTCACCTTGTCGTAAAT
GTGGCAAGCAGATACCTCGCACACATACCGCAAACGTCGGAACAAACCAC
AGTCACATACATAAGATATCCCCCCCCTATCGAAACCATTTATATTTTCA
AGGCTATTCTCGGCAAAGAGTTTTTTGTTGGCAGCGTTTGCCGCGGTATC
CGGCCACCACGCATTGCACAGCAATTCTTGGGCGGCGACTGCGCACCAGG
TGTACGTGTTGGATGCTCTTTGCTCCCTATGCATGTGACCACCGCTCCAG
AACTCTTTGATCAAGTGTTTTATACAAACACATCTTTGTGGCATCTTGTG
GTAGGCGCTTGTAGTTGGGACTTCGTTCGGGATTTGTTGGCGTCCGTCAA
TCCTCGGGTTTTCGGCCGGAGTGTTGCAAGTCAAGCTATCTATTTAAGGG
GCCGATCATGAGCCCGTGTGTTATTACCCTCGGTGTTGTCACTCCCCGTT
TATTGCCACGCCCCCTGTAGTGCGGCAGCAACCTGGGCGTTACCGCCTGG
GCAGTTTTTGATACCACACACCCCACAGAATATCTGTCACACTCGATGAT
ATTTTTCAAGCCCCAACTTATGATCGCCGGGGTGTGATTTCTCGTGTCGT
TTACGGTTAGACGTACGTTCGTGACGGAAATGTCCTGAACAATTTCATAT
TGCACGGTGCAAGAACTGGGGTCATGCCTTTTTGGTCCTTCATGCCCAAG
TTTATTTTCGCTATGCACCCTCGTATTGCGTGATGTGGTTGTCCATGCGG
CAGGGAACTCATGCACCATTGCCTCATCGTTCGCTGCTCCTACGTTTCTT
TCTTTCGTTCAGCGATGGCTTGGGAAGAGTTCTCCGACTTTGTTCGGCGC
ACGGTCGAGCGGAACTTGAACGGAGCGCAGTTTGACTTCGACACTCGGCA
GTGGTCGAGCAGCATTCGCAAGTGGTGGAGCAGGGCCGTGGAGATGGACG
TGCAAGCCAAAGCCGTAAGTCTGTAGTATAGCTGCTTCAATGTACCATTG
TACTCTTTTTGTTGATGCGGGTTGCGCCCGCAGTCTCTGTGGTAGCGTAT
TCAGGCAGTTTGCCATGGACTCCATGGGCCCGCAATAGTCTACTGGAGGT
GCTTGGCACGCGCCATATTTGCATGAATCAGTCATGTCGGTCTTTGAGGG
AACGGGAGACGAAGTAATTCCGCCCAATCGTGTCGAGGAAACTGACCCTA
TTCTCCGCACTCACCAATCACGCGCTGCTCTGCCGGAATTTGAACCATGG
TACACGAACAGGACCTTTTCCGGCTTTACGATAGCAGCGTAGGGCAGAGG
GACGCCTGGGGAAACCAGGCCTTGAAAGTGGACGCAAGGGTCGAGGACGA
ATGGGACAGCATCTACGTAGATTGCCAAGATGGCGCCGACGTAGACTTTC
AGGACTGGTCATTCGACAGCAGTATCAGCGGTGGGGTCGAGGGGGCAGCG
ACAGGGAGCGACGTGACGGGGTCGAGATTATCAGGGCCATCGTCAGAAGC
CTTGCCGTCATCGTTGCGGAAGGAGGGGGGTGGGTGGGGCGCGAGTCCTG
GTAGTGCAAGCACCGGTGGCTCTCGCTCGGCGCTCATGGCTGCCATGGAC
GCGTTCCAAGAGGAGGAGGAAGCGGAGGAGGGGGAAGAAGAAGGGACGGG
CAGCGAGGGCTTCGATGATGAGGAGATTATCGACTGTGCGATCAGAGGCC
GGTGGACTTTCACAAACAACGATGACCCGGTGAGAGGGCGTTGATCACCC
TTCTCGTTGCGGCGCAGAGTGAACGAACGGTCTTGCGGTTGTTACGGTCG
AGTGTCTTCGTCCGGCCACTTGCAGGAGATTGTCCTAAAGTGCTCGGGGA
AGGCGTATATTTTATCATTGGTAGACACAAATACCGTAGCATGTTTTGCC
TGGAATGTGACCAGTTGTTAGCTGCTGTCAACTGCTCTGGTGGACATGGA
TGACCCAAAACTGTAACAACGATTTACATCCAGCACAAAAACAATTAAAA
TATTACCTTTTGTAGGTCGAAGCTCAGGTCAATTAGGGCATATATCTGCT
TCAATCCCGCCGGGTACGCTTTTTCACCTCAATGAAGACTAAAGAGCAGA
GCTATTTAGATAATCATCGCCAAGGAAGGGCGCCGTGTACGGCGTGATTG
TAGGGCTCCAGACCCCCACTTGGAGAATACCCCCACTGATTGTCCCCCTC
CCCTTCCCGCCACGGTGCTTGTTGTCGACACGCTCCCCGTCTTCTGCAGC
CCCACTTTTCTCCACAATAGTGCCGGTGGCACCGAAGAGAATGTCTTAAT
CTCTTCGAAGTGCGTGGCGGTCCGCGTAGACAAATGGGCTCAACGCGGAG
TGTACATAAAAACATCGGGAAGGGGGGAGGGTACCATTAAATGTAGCGAC
ATGTGAAAATATGTGGAAAATGTTTCGTGCTTTGAGTACCCCGTGGGAAG
TAGACGACGGCTATGCGTGGATGCCACATTTGTCTGTGCGCGCATGTTTA
TTCCAAGGGTATTTCGAAGCAGACGGAAGTGACGCACCGTGAACAGGGGA
AGTGCGTGTCTGTGCATGCGATGCCGTCCTCTCCTTCTGGCTTGCCCGAC
TAGTGTGGGGGTGATTCTGAAAGTGTATTCTGGTCCCATGTATATGTAAG
ATACATACGGTGAGCAATAGGAGTAGCAAGGTTGCGAGCGTGGGTTGGGG
TGGTCAGGGGGTGTCAAACGATCCTTTGGTGTATTTGTTTTTCCTTATTC
TCCTTGATGTTGGCGGTTTGGTCCAAACCAAACCAGTTGTTTTTTCAGTC
CCTCAGCGTTTTGTCCTTTAAGCGCTGCCACTCGCTTGGAAGGCTATTTC
TTGAGGATGTGGGTTGTTTCTCCGTGTGCAGGCATGCGGGCAATCCTGTG
TTGCGTGTGTACCTCACCCTGAGGCATCATGTTGGTATTCGAGCGGTGTG
TATTTGTGAGGAATGTTTGATAGAGAAATATTTTTCGGAGGGACGGACAA
ACAGCTACGACAGAGGCTTCCCAGCTTTGTTCACAGTCGACAGACATCAA
GCGAGAGTGTTTTGCATCGATGATCGAATACGGTACATGTAGCTCTTTCT
GCATTGCCGTCGGAGAGAAGGCGGAGGTCACGTGGATAGAATGTGTCAAC
CATCCGTCCCTGTGGCAGGCTACCGAAGGACATGCCTTGCCCAAGAGCGA
AAATGCGCG back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1225:15154..19712+ >mRNA_E-siliculosus-1a_F_contig1225.1417.1 ID=mRNA_E-siliculosus-1a_F_contig1225.1417.1|Name=mRNA_E-siliculosus-1a_F_contig1225.1417.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2010bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1225:15154..19712+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAGAACGTGCGTGCTGTCGGCGGCGCTGCTGTTCCTTGGAGGAGCAGA
AGGATTCATCACCAGCCTGCCGAGATTACCCACTCGTGACATCGCTCCCA
CGCCCGGGCGATGTAGAGTACCACGACTGGCGCTGACACCACCCCGAAAG
CCCAATACTGGGGCGGGTGCCGGGTCTGCTGCTGCCGGGGGCGATGACAA
TGGCGGGGCGAACGATGTGTTGAAATCGACCAGCGGCATCACCAGAGCGC
CTCTCCGGATAACTCCCAACTTTCAGCCCCAGGAGAAGCGGAGGCCAAAG
ACCTTCGTAGATAAGGACATCACCTATGGGGCGTTCTTGACGGAAGAGAG
CTTTGATATCGCCGATGAGAACGTGCGTGCTGTCGGCGGCGCTGCTGTTC
CTTGGAGGAGCAGAAGGATTCATCACCAGCCTGCCGAGATTACCCACTCG
TGACATCGCTCCCACGCCCGGGCGATGTAGAGTACCACGACTGGCGCTGA
CACCACCCCGAAAGCCCAATACTGGGGCGGGTGCCGGGTCTGCTGCTGCC
GGGGGCGATGACAATGGCGGGGCGAACGATGTGTTGAAATCGACCAGCGG
CATCACCAGAGCGCCTCTCCGGATAACTCCCAACTTTCAGCCCCAGGAGA
AGCGGAGGCCAAAGACCTTCGTAGATAAGGACATCACCTATGGGGCGTTC
TTGACGGAAGAGAGCTTTGATATCGCCGCGATGGCTTGGGAAGAGTTCTC
CGACTTTGTTCGGCGCACGGTCGAGCGGAACTTGAACGGAGCGCAGTTTG
ACTTCGACACTCGGCAGTGGTCGAGCAGCATTCGCAAGTGGTGGAGCAGG
GCCGTGGAGATGGACGTGCAAGCCAAAGCCCGATGGCTTGGGAAGAGTTC
TCCGACTTTGTTCGGCGCACGGTCGAGCGGAACTTGAACGGAGCGCAGTT
TGACTTCGACACTCGGCAGTGGTCGAGCAGCATTCGCAAGTGGTGGAGCA
GGGCCGTGGAGATGGACGTGCAAGCCAAAGCCGACCTTTTCCGGCTTTAC
GATAGCAGCGTAGGGCAGAGGGACGCCTGGGGAAACCAGGCCTTGAAAGT
GGACGCAAGGGTCGAGGACGAATGGGACAGCATCTACGTAGATTGCCAAG
ATGGCGCCGACGTAGACTTTCAGGACTGGTCATTCGACAGCAGTATCAGC
GGTGGGGTCGAGGGGGCAGCGACAGGGAGCGACGTGACGGGGTCGAGATT
ATCAGGGCCATCGTCAGAAGCCTTGCCGTCATCGTTGCGGAAGGAGGGGG
GTGGGTGGGGCGCGAGTCCTGGTAGTGCAAGCACCGGTGGCTCTCGCTCG
GCGCTCATGGCTGCCATGGACGCGTTCCAAGAGGAGGAGGAAGCGGAGGA
GGGGGAAGAAGAAGGGACGGGCAGCGAGGGCTTCGATGATGAGGAGATTA
TCGACTGTGCGATCAGAGGCCGGTGGACTTTCACAAACAACGATGACCCG
GACCTTTTCCGGCTTTACGATAGCAGCGTAGGGCAGAGGGACGCCTGGGG
AAACCAGGCCTTGAAAGTGGACGCAAGGGTCGAGGACGAATGGGACAGCA
TCTACGTAGATTGCCAAGATGGCGCCGACGTAGACTTTCAGGACTGGTCA
TTCGACAGCAGTATCAGCGGTGGGGTCGAGGGGGCAGCGACAGGGAGCGA
CGTGACGGGGTCGAGATTATCAGGGCCATCGTCAGAAGCCTTGCCGTCAT
CGTTGCGGAAGGAGGGGGGTGGGTGGGGCGCGAGTCCTGGTAGTGCAAGC
ACCGGTGGCTCTCGCTCGGCGCTCATGGCTGCCATGGACGCGTTCCAAGA
GGAGGAGGAAGCGGAGGAGGGGGAAGAAGAAGGGACGGGCAGCGAGGGCT
TCGATGATGAGGAGATTATCGACTGTGCGATCAGAGGCCGGTGGACTTTC
ACAAACAACGATGACCCGCCCCACTTTTCTCCACAATAGCCCCACTTTTC
TCCACAATAG back to top
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