prot_E-siliculosus-1a_F_contig12221.1403.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig12221.1403.1
Unique Nameprot_E-siliculosus-1a_F_contig12221.1403.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length62
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig12221.1403.1 vs. uniprot
Match: D7FH45_ECTSI (ERCC4 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH45_ECTSI)

HSP 1 Score: 122 bits (306), Expect = 5.990e-31
Identity = 59/61 (96.72%), Postives = 60/61 (98.36%), Query Frame = 0
Query:    1 FDQARESLNILQDLEPDFVVLYDPDAAFVRTLEAYQAGRPLDRPPLVVYFMLYEQSVEEQR 61
            + QARESLNILQDLEPDFVVLYDPDAAFVRTLEAYQAGRPLDRPPLVVYFMLYEQSVEEQR
Sbjct:  771 YAQARESLNILQDLEPDFVVLYDPDAAFVRTLEAYQAGRPLDRPPLVVYFMLYEQSVEEQR 831          
BLAST of mRNA_E-siliculosus-1a_F_contig12221.1403.1 vs. uniprot
Match: A0A6H5JEA6_9PHAE (ERCC4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEA6_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 2.830e-30
Identity = 59/61 (96.72%), Postives = 59/61 (96.72%), Query Frame = 0
Query:    1 FDQARESLNILQDLEPDFVVLYDPDAAFVRTLEAYQAGRPLDRPPLVVYFMLYEQSVEEQR 61
            F QARESLNILQDLEPDFVVLYDPDAAFVRTLEAYQAGR LDRPPLVVYFMLYEQSVEEQR
Sbjct:  862 FAQARESLNILQDLEPDFVVLYDPDAAFVRTLEAYQAGRTLDRPPLVVYFMLYEQSVEEQR 922          
BLAST of mRNA_E-siliculosus-1a_F_contig12221.1403.1 vs. uniprot
Match: A0A4D9D5Y9_9STRA (ERCC4 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D5Y9_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 7.120e-12
Identity = 32/61 (52.46%), Postives = 45/61 (73.77%), Query Frame = 0
Query:    1 FDQARESLNILQDLEPDFVVLYDPDAAFVRTLEAYQAGRPLDRPPLVVYFMLYEQSVEEQR 61
            + QA  ++ +++++ PD +VLYDPDA FVR +E +QA RP     L VYFM+YE+SVEEQR
Sbjct:  784 YSQAYTNMKLIEEVYPDAIVLYDPDAQFVREVEVHQARRP-PTETLRVYFMVYEESVEEQR 843          
BLAST of mRNA_E-siliculosus-1a_F_contig12221.1403.1 vs. uniprot
Match: W7TM79_9STRA (Dna repair endonuclease xpf n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TM79_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 9.120e-12
Identity = 31/61 (50.82%), Postives = 45/61 (73.77%), Query Frame = 0
Query:    1 FDQARESLNILQDLEPDFVVLYDPDAAFVRTLEAYQAGRPLDRPPLVVYFMLYEQSVEEQR 61
            + QA  ++ +++++ PD ++LYDPDA FVR +E +QA RP     L VYFM+YE+SVEEQR
Sbjct:  111 YSQAYTNMKLIEEVYPDAIILYDPDAQFVREVEVHQARRP-PTETLRVYFMVYEESVEEQR 170          
BLAST of mRNA_E-siliculosus-1a_F_contig12221.1403.1 vs. uniprot
Match: A4S158_OSTLU (ERCC4 domain-containing protein n=2 Tax=Ostreococcus sp. 'lucimarinus' TaxID=242159 RepID=A4S158_OSTLU)

HSP 1 Score: 67.0 bits (162), Expect = 1.810e-11
Identity = 30/57 (52.63%), Postives = 42/57 (73.68%), Query Frame = 0
Query:    5 RESLNILQDLEPDFVVLYDPDAAFVRTLEAYQAGRPLDRPPLVVYFMLYEQSVEEQR 61
               LN+L  ++P FVV+YDPDA+F+R LE YQA RP    P+ VYF++Y+ S+EEQ+
Sbjct:  616 ERKLNLLNRIQPSFVVMYDPDASFIRELEVYQATRP--DVPVKVYFLVYDTSLEEQK 670          
BLAST of mRNA_E-siliculosus-1a_F_contig12221.1403.1 vs. uniprot
Match: A0A7S0KJP7_9CHLO (Hypothetical protein n=2 Tax=Ostreococcus mediterraneus TaxID=1486918 RepID=A0A7S0KJP7_9CHLO)

HSP 1 Score: 66.6 bits (161), Expect = 2.480e-11
Identity = 30/54 (55.56%), Postives = 41/54 (75.93%), Query Frame = 0
Query:    8 LNILQDLEPDFVVLYDPDAAFVRTLEAYQAGRPLDRPPLVVYFMLYEQSVEEQR 61
            +N+L  ++P FVV+YDPDAAF+R LE Y+A  P    PL VYFM+Y+ S+EEQ+
Sbjct:  660 VNVLNHIQPSFVVMYDPDAAFIRELEVYKAQHP--DAPLKVYFMVYDTSLEEQK 711          
BLAST of mRNA_E-siliculosus-1a_F_contig12221.1403.1 vs. uniprot
Match: A0A067CU23_SAPPC (ERCC4 domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CU23_SAPPC)

HSP 1 Score: 65.5 bits (158), Expect = 6.310e-11
Identity = 31/60 (51.67%), Postives = 41/60 (68.33%), Query Frame = 0
Query:    1 FDQARESLNILQDLEPDFVVLYDPDAAFVRTLEAYQAGRPLDRPPLVVYFMLYEQSVEEQ 60
            + QA+    +L DL+P+ VVLYDPD AF+R LE Y A    D  PL VYFM+Y++S E+Q
Sbjct:  505 YAQAKRCATLLHDLQPEHVVLYDPDVAFIRELEVYHAHYADD--PLSVYFMVYDESAEQQ 562          
BLAST of mRNA_E-siliculosus-1a_F_contig12221.1403.1 vs. uniprot
Match: Q013S3_OSTTA (Restriction endonuclease type II-like n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=Q013S3_OSTTA)

HSP 1 Score: 64.3 bits (155), Expect = 1.620e-10
Identity = 33/62 (53.23%), Postives = 42/62 (67.74%), Query Frame = 0
Query:    1 FDQARE-SLNILQDLEPDFVVLYDPDAAFVRTLEAYQAGRPLDRPPLVVYFMLYEQSVEEQR 61
            F  A E  LN+L  + P FVV+YDPDAAF+R LE YQA  P     + VYFM+Y+ S+EEQ+
Sbjct:  623 FVYAHERKLNLLNRIRPSFVVMYDPDAAFIRELEVYQAQHP--EVTVKVYFMVYDTSLEEQK 682          
BLAST of mRNA_E-siliculosus-1a_F_contig12221.1403.1 vs. uniprot
Match: A0A1W0A3H2_9STRA (DNA repair endonuclease XPF n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A3H2_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 2.200e-10
Identity = 30/60 (50.00%), Postives = 43/60 (71.67%), Query Frame = 0
Query:    1 FDQARESLNILQDLEPDFVVLYDPDAAFVRTLEAYQAGRPLDRPPLVVYFMLYEQSVEEQ 60
            + Q ++  ++L+DL+P+ V+LYDPD AF+R LE Y A    D  PL VYFM+YE+S E+Q
Sbjct:  502 YAQGKKCGSLLEDLQPEHVILYDPDVAFIRELEIYHARYYED--PLNVYFMVYEESAEQQ 559          
BLAST of mRNA_E-siliculosus-1a_F_contig12221.1403.1 vs. uniprot
Match: A0A168J231_MUCCL (ERCC4 domain-containing protein n=4 Tax=Mucor TaxID=4830 RepID=A0A168J231_MUCCL)

HSP 1 Score: 62.8 bits (151), Expect = 5.640e-10
Identity = 32/59 (54.24%), Postives = 40/59 (67.80%), Query Frame = 0
Query:    2 DQARESLNILQDLEPDFVVLYDPDAAFVRTLEAYQAGRPLDRPPLVVYFMLYEQSVEEQ 60
            D A E   +LQD +P F++LYDP+ AFVR +E Y+A  P     + VYFMLYE SVEEQ
Sbjct:  569 DDANEQ--VLQDAQPRFIILYDPNPAFVRQIEVYRAQHPT--VDIRVYFMLYENSVEEQ 623          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig12221.1403.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FH45_ECTSI5.990e-3196.72ERCC4 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JEA6_9PHAE2.830e-3096.72ERCC4 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A4D9D5Y9_9STRA7.120e-1252.46ERCC4 domain-containing protein n=1 Tax=Nannochlor... [more]
W7TM79_9STRA9.120e-1250.82Dna repair endonuclease xpf n=1 Tax=Nannochloropsi... [more]
A4S158_OSTLU1.810e-1152.63ERCC4 domain-containing protein n=2 Tax=Ostreococc... [more]
A0A7S0KJP7_9CHLO2.480e-1155.56Hypothetical protein n=2 Tax=Ostreococcus mediterr... [more]
A0A067CU23_SAPPC6.310e-1151.67ERCC4 domain-containing protein n=2 Tax=Saprolegni... [more]
Q013S3_OSTTA1.620e-1053.23Restriction endonuclease type II-like n=2 Tax=Ostr... [more]
A0A1W0A3H2_9STRA2.200e-1050.00DNA repair endonuclease XPF n=1 Tax=Thraustotheca ... [more]
A0A168J231_MUCCL5.640e-1054.24ERCC4 domain-containing protein n=4 Tax=Mucor TaxI... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR10150DNA REPAIR ENDONUCLEASE XPFcoord: 5..61

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig12221contigE-siliculosus-1a_F_contig12221:1114..1299 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig12221.1403.1mRNA_E-siliculosus-1a_F_contig12221.1403.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig12221 1114..1299 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig12221.1403.1 ID=prot_E-siliculosus-1a_F_contig12221.1403.1|Name=mRNA_E-siliculosus-1a_F_contig12221.1403.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=62bp
FDQARESLNILQDLEPDFVVLYDPDAAFVRTLEAYQAGRPLDRPPLVVYF
MLYEQSVEEQR*
back to top