mRNA_E-siliculosus-1a_F_contig12221.1403.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig12221.1403.1
Unique NamemRNA_E-siliculosus-1a_F_contig12221.1403.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig12221.1403.1 vs. uniprot
Match: D7FH45_ECTSI (ERCC4 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH45_ECTSI)

HSP 1 Score: 122 bits (306), Expect = 5.990e-31
Identity = 59/61 (96.72%), Postives = 60/61 (98.36%), Query Frame = 1 
Query:    1 FDQARESLNILQDLEPDFVVLYDPDAAFVRTLEAYQAGRPLDRPPLVVYFMLYEQSVEEQR 183
            + QARESLNILQDLEPDFVVLYDPDAAFVRTLEAYQAGRPLDRPPLVVYFMLYEQSVEEQR
Sbjct:  771 YAQARESLNILQDLEPDFVVLYDPDAAFVRTLEAYQAGRPLDRPPLVVYFMLYEQSVEEQR 831
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BLAST of mRNA_E-siliculosus-1a_F_contig12221.1403.1 vs. uniprot
Match: A0A6H5JEA6_9PHAE (ERCC4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEA6_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 2.830e-30
Identity = 59/61 (96.72%), Postives = 59/61 (96.72%), Query Frame = 1 
Query:    1 FDQARESLNILQDLEPDFVVLYDPDAAFVRTLEAYQAGRPLDRPPLVVYFMLYEQSVEEQR 183
            F QARESLNILQDLEPDFVVLYDPDAAFVRTLEAYQAGR LDRPPLVVYFMLYEQSVEEQR
Sbjct:  862 FAQARESLNILQDLEPDFVVLYDPDAAFVRTLEAYQAGRTLDRPPLVVYFMLYEQSVEEQR 922
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BLAST of mRNA_E-siliculosus-1a_F_contig12221.1403.1 vs. uniprot
Match: A0A4D9D5Y9_9STRA (ERCC4 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D5Y9_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 7.120e-12
Identity = 32/61 (52.46%), Postives = 45/61 (73.77%), Query Frame = 1 
Query:    1 FDQARESLNILQDLEPDFVVLYDPDAAFVRTLEAYQAGRPLDRPPLVVYFMLYEQSVEEQR 183
            + QA  ++ +++++ PD +VLYDPDA FVR +E +QA RP     L VYFM+YE+SVEEQR
Sbjct:  784 YSQAYTNMKLIEEVYPDAIVLYDPDAQFVREVEVHQARRP-PTETLRVYFMVYEESVEEQR 843
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BLAST of mRNA_E-siliculosus-1a_F_contig12221.1403.1 vs. uniprot
Match: W7TM79_9STRA (Dna repair endonuclease xpf n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TM79_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 9.120e-12
Identity = 31/61 (50.82%), Postives = 45/61 (73.77%), Query Frame = 1 
Query:    1 FDQARESLNILQDLEPDFVVLYDPDAAFVRTLEAYQAGRPLDRPPLVVYFMLYEQSVEEQR 183
            + QA  ++ +++++ PD ++LYDPDA FVR +E +QA RP     L VYFM+YE+SVEEQR
Sbjct:  111 YSQAYTNMKLIEEVYPDAIILYDPDAQFVREVEVHQARRP-PTETLRVYFMVYEESVEEQR 170
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BLAST of mRNA_E-siliculosus-1a_F_contig12221.1403.1 vs. uniprot
Match: A4S158_OSTLU (ERCC4 domain-containing protein n=2 Tax=Ostreococcus sp. 'lucimarinus' TaxID=242159 RepID=A4S158_OSTLU)

HSP 1 Score: 67.0 bits (162), Expect = 1.810e-11
Identity = 30/57 (52.63%), Postives = 42/57 (73.68%), Query Frame = 1 
Query:   13 RESLNILQDLEPDFVVLYDPDAAFVRTLEAYQAGRPLDRPPLVVYFMLYEQSVEEQR 183
               LN+L  ++P FVV+YDPDA+F+R LE YQA RP    P+ VYF++Y+ S+EEQ+
Sbjct:  616 ERKLNLLNRIQPSFVVMYDPDASFIRELEVYQATRP--DVPVKVYFLVYDTSLEEQK 670
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BLAST of mRNA_E-siliculosus-1a_F_contig12221.1403.1 vs. uniprot
Match: A0A7S0KJP7_9CHLO (Hypothetical protein n=2 Tax=Ostreococcus mediterraneus TaxID=1486918 RepID=A0A7S0KJP7_9CHLO)

HSP 1 Score: 66.6 bits (161), Expect = 2.480e-11
Identity = 30/54 (55.56%), Postives = 41/54 (75.93%), Query Frame = 1 
Query:   22 LNILQDLEPDFVVLYDPDAAFVRTLEAYQAGRPLDRPPLVVYFMLYEQSVEEQR 183
            +N+L  ++P FVV+YDPDAAF+R LE Y+A  P    PL VYFM+Y+ S+EEQ+
Sbjct:  660 VNVLNHIQPSFVVMYDPDAAFIRELEVYKAQHP--DAPLKVYFMVYDTSLEEQK 711
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BLAST of mRNA_E-siliculosus-1a_F_contig12221.1403.1 vs. uniprot
Match: A0A067CU23_SAPPC (ERCC4 domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CU23_SAPPC)

HSP 1 Score: 65.5 bits (158), Expect = 6.310e-11
Identity = 31/60 (51.67%), Postives = 41/60 (68.33%), Query Frame = 1 
Query:    1 FDQARESLNILQDLEPDFVVLYDPDAAFVRTLEAYQAGRPLDRPPLVVYFMLYEQSVEEQ 180
            + QA+    +L DL+P+ VVLYDPD AF+R LE Y A    D  PL VYFM+Y++S E+Q
Sbjct:  505 YAQAKRCATLLHDLQPEHVVLYDPDVAFIRELEVYHAHYADD--PLSVYFMVYDESAEQQ 562
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BLAST of mRNA_E-siliculosus-1a_F_contig12221.1403.1 vs. uniprot
Match: Q013S3_OSTTA (Restriction endonuclease type II-like n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=Q013S3_OSTTA)

HSP 1 Score: 64.3 bits (155), Expect = 1.620e-10
Identity = 33/62 (53.23%), Postives = 42/62 (67.74%), Query Frame = 1 
Query:    1 FDQARE-SLNILQDLEPDFVVLYDPDAAFVRTLEAYQAGRPLDRPPLVVYFMLYEQSVEEQR 183
            F  A E  LN+L  + P FVV+YDPDAAF+R LE YQA  P     + VYFM+Y+ S+EEQ+
Sbjct:  623 FVYAHERKLNLLNRIRPSFVVMYDPDAAFIRELEVYQAQHP--EVTVKVYFMVYDTSLEEQK 682
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BLAST of mRNA_E-siliculosus-1a_F_contig12221.1403.1 vs. uniprot
Match: A0A1W0A3H2_9STRA (DNA repair endonuclease XPF n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A3H2_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 2.200e-10
Identity = 30/60 (50.00%), Postives = 43/60 (71.67%), Query Frame = 1 
Query:    1 FDQARESLNILQDLEPDFVVLYDPDAAFVRTLEAYQAGRPLDRPPLVVYFMLYEQSVEEQ 180
            + Q ++  ++L+DL+P+ V+LYDPD AF+R LE Y A    D  PL VYFM+YE+S E+Q
Sbjct:  502 YAQGKKCGSLLEDLQPEHVILYDPDVAFIRELEIYHARYYED--PLNVYFMVYEESAEQQ 559
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BLAST of mRNA_E-siliculosus-1a_F_contig12221.1403.1 vs. uniprot
Match: A0A168J231_MUCCL (ERCC4 domain-containing protein n=4 Tax=Mucor TaxID=4830 RepID=A0A168J231_MUCCL)

HSP 1 Score: 62.8 bits (151), Expect = 5.640e-10
Identity = 32/59 (54.24%), Postives = 40/59 (67.80%), Query Frame = 1 
Query:    4 DQARESLNILQDLEPDFVVLYDPDAAFVRTLEAYQAGRPLDRPPLVVYFMLYEQSVEEQ 180
            D A E   +LQD +P F++LYDP+ AFVR +E Y+A  P     + VYFMLYE SVEEQ
Sbjct:  569 DDANEQ--VLQDAQPRFIILYDPNPAFVRQIEVYRAQHPT--VDIRVYFMLYENSVEEQ 623
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig12221.1403.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FH45_ECTSI5.990e-3196.72ERCC4 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JEA6_9PHAE2.830e-3096.72ERCC4 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A4D9D5Y9_9STRA7.120e-1252.46ERCC4 domain-containing protein n=1 Tax=Nannochlor... [more]
W7TM79_9STRA9.120e-1250.82Dna repair endonuclease xpf n=1 Tax=Nannochloropsi... [more]
A4S158_OSTLU1.810e-1152.63ERCC4 domain-containing protein n=2 Tax=Ostreococc... [more]
A0A7S0KJP7_9CHLO2.480e-1155.56Hypothetical protein n=2 Tax=Ostreococcus mediterr... [more]
A0A067CU23_SAPPC6.310e-1151.67ERCC4 domain-containing protein n=2 Tax=Saprolegni... [more]
Q013S3_OSTTA1.620e-1053.23Restriction endonuclease type II-like n=2 Tax=Ostr... [more]
A0A1W0A3H2_9STRA2.200e-1050.00DNA repair endonuclease XPF n=1 Tax=Thraustotheca ... [more]
A0A168J231_MUCCL5.640e-1054.24ERCC4 domain-containing protein n=4 Tax=Mucor TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig12221contigE-siliculosus-1a_F_contig12221:1114..1299 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size186
Model size186
Exons1
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko01000,ko03032,ko03400
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.L
EggNOG OGsCOG1948@1,KOG0442@2759
EggNOG free text desc.resolution of meiotic recombination intermediates
GOsGO:0000003,GO:0000014,GO:0000109,GO:0000110,GO:0000280,GO:0000710,GO:0000712,GO:0000724,GO:0000725,GO:0000726,GO:0000735,GO:0000736,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003697,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006139,GO:0006259,GO:0006277,GO:0006281,GO:0006289,GO:0006296,GO:0006298,GO:0006302,GO:0006310,GO:0006312,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0006996,GO:0007049,GO:0007059,GO:0007127,GO:0007131,GO:0007530,GO:0007531,GO:0007533,GO:0007534,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009628,GO:0009987,GO:0016043,GO:0016787,GO:0016788,GO:0018130,GO:0019438,GO:0022402,GO:0022413,GO:0022414,GO:0030154,GO:0032502,GO:0032505,GO:0032991,GO:0033554,GO:0033683,GO:0034641,GO:0034645,GO:0034654,GO:0035822,GO:0035825,GO:0036297,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045002,GO:0045132,GO:0045165,GO:0046483,GO:0048285,GO:0048869,GO:0050896,GO:0051304,GO:0051307,GO:0051321,GO:0051716,GO:0061982,GO:0071704,GO:0071840,GO:0071897,GO:0090304,GO:0090305,GO:0097159,GO:0098813,GO:0140013,GO:0140097,GO:1901255,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1903046,GO:1990391,GO:1990599
KEGG Pathwayko03420,ko03460,map03420,map03460
KEGG koko:K10848
Preferred nameRAD1
Seed eggNOG ortholog2880.D7FH45
Seed ortholog evalue4.1e-26
Seed ortholog score123.2
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927741.7823546-CDS-E-siliculosus-1a_F_contig12221:1113..12991622927741.7823546-CDS-E-siliculosus-1a_F_contig12221:1113..1299Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12221 1114..1299 +
1696318662.8479595-CDS-E-siliculosus-1a_F_contig12221:1113..12991696318662.8479595-CDS-E-siliculosus-1a_F_contig12221:1113..1299Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12221 1114..1299 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig12221.1403.1prot_E-siliculosus-1a_F_contig12221.1403.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig12221 1114..1299 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig12221.1403.1

>prot_E-siliculosus-1a_F_contig12221.1403.1 ID=prot_E-siliculosus-1a_F_contig12221.1403.1|Name=mRNA_E-siliculosus-1a_F_contig12221.1403.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=62bp
FDQARESLNILQDLEPDFVVLYDPDAAFVRTLEAYQAGRPLDRPPLVVYF
MLYEQSVEEQR*
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mRNA from alignment at E-siliculosus-1a_F_contig12221:1114..1299+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig12221.1403.1 ID=mRNA_E-siliculosus-1a_F_contig12221.1403.1|Name=mRNA_E-siliculosus-1a_F_contig12221.1403.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=186bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12221:1114..1299+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TTCGACCAGGCTCGGGAAAGCCTCAACATTCTCCAGGACCTAGAGCCGGA
CTTCGTGGTTTTGTACGACCCCGACGCGGCGTTCGTTCGAACCCTAGAGG
CCTACCAGGCAGGGAGGCCGCTCGACCGCCCCCCCCTCGTGGTGTACTTC
ATGCTGTACGAGCAGAGCGTGGAGGAGCAAAGGTAA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig12221:1114..1299+

>mRNA_E-siliculosus-1a_F_contig12221.1403.1 ID=mRNA_E-siliculosus-1a_F_contig12221.1403.1|Name=mRNA_E-siliculosus-1a_F_contig12221.1403.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=372bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12221:1114..1299+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TTCGACCAGGCTCGGGAAAGCCTCAACATTCTCCAGGACCTAGAGCCGGA
CTTCGTGGTTTTGTACGACCCCGACGCGGCGTTCGTTCGAACCCTAGAGG
CCTACCAGGCAGGGAGGCCGCTCGACCGCCCCCCCCTCGTGGTGTACTTC
ATGCTGTACGAGCAGAGCGTGGAGGAGCAAAGGTAATTCGACCAGGCTCG
GGAAAGCCTCAACATTCTCCAGGACCTAGAGCCGGACTTCGTGGTTTTGT
ACGACCCCGACGCGGCGTTCGTTCGAACCCTAGAGGCCTACCAGGCAGGG
AGGCCGCTCGACCGCCCCCCCCTCGTGGTGTACTTCATGCTGTACGAGCA
GAGCGTGGAGGAGCAAAGGTAA
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