prot_E-siliculosus-1a_F_contig12010.1295.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig12010.1295.1
Unique Nameprot_E-siliculosus-1a_F_contig12010.1295.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length224
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig12010.1295.1 vs. uniprot
Match: D7G466_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G466_ECTSI)

HSP 1 Score: 209 bits (532), Expect = 3.040e-62
Identity = 102/104 (98.08%), Postives = 103/104 (99.04%), Query Frame = 0
Query:    1 MDTMDTDALLGMSLDEMLAAKPKKKVDRGGRGGKVRNTGRASRQQQTQPYRQPAPKGSVGGGSNNRVYVGNLAWTVTWKELKDLMSTCGPCKAEVPCGADGRSR 104
            MDTMDT+ALLGMSLDEMLAAKPKKKVDRGGRGGKVRNTGRASRQQQTQPYRQPAPKGSVGGGSNNRVYVGNLAWTVTWKELKDLM TCGPCKAEVPCGADGRSR
Sbjct:    1 MDTMDTEALLGMSLDEMLAAKPKKKVDRGGRGGKVRNTGRASRQQQTQPYRQPAPKGSVGGGSNNRVYVGNLAWTVTWKELKDLMGTCGPCKAEVPCGADGRSR 104          
BLAST of mRNA_E-siliculosus-1a_F_contig12010.1295.1 vs. uniprot
Match: A0A7S2XHR1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XHR1_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 1.490e-6
Identity = 33/76 (43.42%), Postives = 45/76 (59.21%), Query Frame = 0
Query:   36 RNTGRASRQQQTQPYR-----QPAPKGSVGGGSNNRVYVGNLAWTVTWKELKDLMSTCG--PCKAEVPCGADGRSR 104
            R++ R SR+Q   PYR     Q   +   G G + RVYVGNL+W VTW+ELKD M + G    +++V    DGRS+
Sbjct:   28 RSSNRDSRRQHNAPYRSGSGKQDTSQSDEGSGQSCRVYVGNLSWAVTWRELKDHMKSTGFEVTRSDVMAFPDGRSK 103          
BLAST of mRNA_E-siliculosus-1a_F_contig12010.1295.1 vs. uniprot
Match: A0A7S2EAE6_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EAE6_TRICV)

HSP 1 Score: 52.8 bits (125), Expect = 3.090e-5
Identity = 23/41 (56.10%), Postives = 30/41 (73.17%), Query Frame = 0
Query:   66 RVYVGNLAWTVTWKELKDLMST--CGPCKAEVPCGADGRSR 104
            RVYVGNL+W VTW+ELKD M T  C   +A++ C  +GRS+
Sbjct:   66 RVYVGNLSWDVTWRELKDHMKTTGCEVTRADILCSPEGRSK 106          
BLAST of mRNA_E-siliculosus-1a_F_contig12010.1295.1 vs. uniprot
Match: A0A7J7IJR9_9RHOD (Uncharacterized protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IJR9_9RHOD)

HSP 1 Score: 54.3 bits (129), Expect = 3.530e-5
Identity = 34/67 (50.75%), Postives = 39/67 (58.21%), Query Frame = 0
Query:   40 RASRQQQTQPYRQPAPKGSVGGG-SNNRVYVGNLAWTVTWKELKDLMSTCGPCK-AEVPCGADGRSR 104
            RA R  +  P   PA  G+ GG   + RVYVGNLAW+VTW+ LKD M   G    AEV    DGRSR
Sbjct:   67 RAVRASKLDPNAPPAGPGAEGGALPSRRVYVGNLAWSVTWQALKDHMRKAGEVVFAEVFTERDGRSR 133          
BLAST of mRNA_E-siliculosus-1a_F_contig12010.1295.1 vs. uniprot
Match: A0A7S4IUY7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IUY7_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 3.620e-5
Identity = 24/41 (58.54%), Postives = 29/41 (70.73%), Query Frame = 0
Query:   66 RVYVGNLAWTVTWKELKDLMST--CGPCKAEVPCGADGRSR 104
            RVYVGNL+W  TW+ELKD M T  C   +A+V C  DGRS+
Sbjct:   21 RVYVGNLSWETTWRELKDHMKTTGCEVTRADVLCSPDGRSK 61          
BLAST of mRNA_E-siliculosus-1a_F_contig12010.1295.1 vs. uniprot
Match: A0A7S1U1B8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U1B8_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 4.880e-5
Identity = 28/52 (53.85%), Postives = 33/52 (63.46%), Query Frame = 0
Query:   54 APKGSVGGGSNNRVYVGNLAWTVTWKELKDLMSTCGPCK-AEVPCGADGRSR 104
            AP+G    G N RVYVGNLA++ TW+ELKD M   G    A V  G DGRS+
Sbjct:  102 APEGGDDAGGNRRVYVGNLAFSTTWQELKDHMRQAGEVTHASVLQGPDGRSK 153          
BLAST of mRNA_E-siliculosus-1a_F_contig12010.1295.1 vs. uniprot
Match: A0A7S1XRR0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XRR0_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 4.920e-5
Identity = 28/52 (53.85%), Postives = 33/52 (63.46%), Query Frame = 0
Query:   54 APKGSVGGGSNNRVYVGNLAWTVTWKELKDLMSTCGPCK-AEVPCGADGRSR 104
            AP+G    G N RVYVGNLA++ TW+ELKD M   G    A V  G DGRS+
Sbjct:  103 APEGGDDAGGNRRVYVGNLAFSTTWQELKDHMRQAGEVTHASVLQGPDGRSK 154          
BLAST of mRNA_E-siliculosus-1a_F_contig12010.1295.1 vs. uniprot
Match: A0A7S4IUY5_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IUY5_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 6.880e-5
Identity = 25/47 (53.19%), Postives = 30/47 (63.83%), Query Frame = 0
Query:   60 GGGSNNRVYVGNLAWTVTWKELKDLMST--CGPCKAEVPCGADGRSR 104
            G     RVYVGNL+W  TW+ELKD M T  C   +A+V C  DGRS+
Sbjct:  107 GSDRTRRVYVGNLSWETTWRELKDHMKTTGCEVTRADVLCSPDGRSK 153          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig12010.1295.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7G466_ECTSI3.040e-6298.08Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2XHR1_9STRA1.490e-643.42Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A7S2EAE6_TRICV3.090e-556.10Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A7J7IJR9_9RHOD3.530e-550.75Uncharacterized protein n=1 Tax=Cyanidiococcus yan... [more]
A0A7S4IUY7_9STRA3.620e-558.54Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
A0A7S1U1B8_9STRA4.880e-553.85Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S1XRR0_9STRA4.920e-553.85Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S4IUY5_9STRA6.880e-553.19Hypothetical protein n=2 Tax=Odontella aurita TaxI... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 67..104
e-value: 1.0E-5
score: 25.3
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 31..116
e-value: 9.2E-9
score: 37.3
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 39..103

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig12010contigE-siliculosus-1a_F_contig12010:850..1521 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig12010.1295.1mRNA_E-siliculosus-1a_F_contig12010.1295.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig12010 712..1715 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig12010.1295.1 ID=prot_E-siliculosus-1a_F_contig12010.1295.1|Name=mRNA_E-siliculosus-1a_F_contig12010.1295.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=224bp
MDTMDTDALLGMSLDEMLAAKPKKKVDRGGRGGKVRNTGRASRQQQTQPY
RQPAPKGSVGGGSNNRVYVGNLAWTVTWKELKDLMSTCGPCKAEVPCGAD
GRSRVSWRRRRFAAVAGCWGTGSITQPVSLSCVAVVCASLCFDTSFARAA
GTDLRFLFPRCSTTRSQWAHAARRPLRRGDTPPKSTHYLSTGGGVAQKKP
QLGRVRKGHGTNNGITRKCRLAT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR012677Nucleotide-bd_a/b_plait_sf
IPR000504RRM_dom