mRNA_E-siliculosus-1a_F_contig12010.1295.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig12010.1295.1
Unique NamemRNA_E-siliculosus-1a_F_contig12010.1295.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig12010.1295.1 vs. uniprot
Match: D7G466_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G466_ECTSI)

HSP 1 Score: 210 bits (534), Expect = 6.320e-61
Identity = 102/104 (98.08%), Postives = 103/104 (99.04%), Query Frame = 1 
Query:  139 MDTMDTDALLGMSLDEMLAAKPKKKVDRGGRGGKVRNTGRASRQQQTQPYRQPAPKGSVGGGSNNRVYVGNLAWTVTWKELKDLMSTCGPCKAEVPCGADGRSR 450
            MDTMDT+ALLGMSLDEMLAAKPKKKVDRGGRGGKVRNTGRASRQQQTQPYRQPAPKGSVGGGSNNRVYVGNLAWTVTWKELKDLM TCGPCKAEVPCGADGRSR
Sbjct:    1 MDTMDTEALLGMSLDEMLAAKPKKKVDRGGRGGKVRNTGRASRQQQTQPYRQPAPKGSVGGGSNNRVYVGNLAWTVTWKELKDLMGTCGPCKAEVPCGADGRSR 104
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BLAST of mRNA_E-siliculosus-1a_F_contig12010.1295.1 vs. uniprot
Match: A0A7S2XHR1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XHR1_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 4.650e-6
Identity = 33/76 (43.42%), Postives = 45/76 (59.21%), Query Frame = 1 
Query:  244 RNTGRASRQQQTQPYR-----QPAPKGSVGGGSNNRVYVGNLAWTVTWKELKDLMSTCG--PCKAEVPCGADGRSR 450
            R++ R SR+Q   PYR     Q   +   G G + RVYVGNL+W VTW+ELKD M + G    +++V    DGRS+
Sbjct:   28 RSSNRDSRRQHNAPYRSGSGKQDTSQSDEGSGQSCRVYVGNLSWAVTWRELKDHMKSTGFEVTRSDVMAFPDGRSK 103
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BLAST of mRNA_E-siliculosus-1a_F_contig12010.1295.1 vs. uniprot
Match: A0A7S2EAE6_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EAE6_TRICV)

HSP 1 Score: 52.8 bits (125), Expect = 7.150e-5
Identity = 23/41 (56.10%), Postives = 30/41 (73.17%), Query Frame = 1 
Query:  334 RVYVGNLAWTVTWKELKDLMST--CGPCKAEVPCGADGRSR 450
            RVYVGNL+W VTW+ELKD M T  C   +A++ C  +GRS+
Sbjct:   66 RVYVGNLSWDVTWRELKDHMKTTGCEVTRADILCSPEGRSK 106
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BLAST of mRNA_E-siliculosus-1a_F_contig12010.1295.1 vs. uniprot
Match: A0A7S4IUY7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IUY7_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 8.760e-5
Identity = 24/41 (58.54%), Postives = 29/41 (70.73%), Query Frame = 1 
Query:  334 RVYVGNLAWTVTWKELKDLMST--CGPCKAEVPCGADGRSR 450
            RVYVGNL+W  TW+ELKD M T  C   +A+V C  DGRS+
Sbjct:   21 RVYVGNLSWETTWRELKDHMKTTGCEVTRADVLCSPDGRSK 61
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig12010.1295.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G466_ECTSI6.320e-6198.08Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2XHR1_9STRA4.650e-643.42Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A7S2EAE6_TRICV7.150e-556.10Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A7S4IUY7_9STRA8.760e-558.54Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig12010contigE-siliculosus-1a_F_contig12010:712..1715 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size672
Model size1004
Exons1
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.H
EggNOG OGsKOG0118@1,KOG0118@2759
EggNOG free text desc.RNA binding
Seed eggNOG ortholog2880.D7G466
Seed ortholog evalue4.2e-52
Seed ortholog score211.5
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig12010.1295.1prot_E-siliculosus-1a_F_contig12010.1295.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig12010 850..1521 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927723.946568-UTR-E-siliculosus-1a_F_contig12010:711..8491622927723.946568-UTR-E-siliculosus-1a_F_contig12010:711..849Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig12010 712..849 +
1696318654.4897864-UTR-E-siliculosus-1a_F_contig12010:711..8491696318654.4897864-UTR-E-siliculosus-1a_F_contig12010:711..849Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig12010 712..849 +
1622927723.9772713-UTR-E-siliculosus-1a_F_contig12010:1521..17151622927723.9772713-UTR-E-siliculosus-1a_F_contig12010:1521..1715Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig12010 1522..1715 +
1696318654.5058577-UTR-E-siliculosus-1a_F_contig12010:1521..17151696318654.5058577-UTR-E-siliculosus-1a_F_contig12010:1521..1715Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig12010 1522..1715 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927723.9624007-CDS-E-siliculosus-1a_F_contig12010:849..15211622927723.9624007-CDS-E-siliculosus-1a_F_contig12010:849..1521Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12010 850..1521 +
1696318654.4983902-CDS-E-siliculosus-1a_F_contig12010:849..15211696318654.4983902-CDS-E-siliculosus-1a_F_contig12010:849..1521Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12010 850..1521 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig12010.1295.1

>prot_E-siliculosus-1a_F_contig12010.1295.1 ID=prot_E-siliculosus-1a_F_contig12010.1295.1|Name=mRNA_E-siliculosus-1a_F_contig12010.1295.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=224bp
MDTMDTDALLGMSLDEMLAAKPKKKVDRGGRGGKVRNTGRASRQQQTQPY
RQPAPKGSVGGGSNNRVYVGNLAWTVTWKELKDLMSTCGPCKAEVPCGAD
GRSRVSWRRRRFAAVAGCWGTGSITQPVSLSCVAVVCASLCFDTSFARAA
GTDLRFLFPRCSTTRSQWAHAARRPLRRGDTPPKSTHYLSTGGGVAQKKP
QLGRVRKGHGTNNGITRKCRLAT*
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mRNA from alignment at E-siliculosus-1a_F_contig12010:712..1715+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig12010.1295.1 ID=mRNA_E-siliculosus-1a_F_contig12010.1295.1|Name=mRNA_E-siliculosus-1a_F_contig12010.1295.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1004bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12010:712..1715+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CTTGTCTCACCTCTCACCTCCCGCACAAAGCAGCACGCTGGACACTGCTG
TCCGCGAACACGCTCGAACAGGACAGTACTTCTATTCGTCGGCCTCTCTG
GTTAGTTACCTCGGCTCTGGCTCTCACCTCTCAACGCGATGGATACAATG
GACACAGACGCTCTTCTGGGGATGTCCTTGGATGAGATGCTCGCAGCAAA
GCCGAAGAAAAAAGTTGATAGAGGAGGCCGAGGCGGGAAAGTGAGGAACA
CCGGCCGAGCCTCTCGACAACAGCAAACCCAACCATACCGTCAACCTGCT
CCAAAGGGTTCTGTAGGAGGGGGGTCTAACAACAGAGTTTACGTCGGCAA
TTTGGCGTGGACCGTGACGTGGAAGGAGCTGAAGGATCTGATGAGCACAT
GCGGCCCCTGCAAGGCTGAAGTCCCATGCGGTGCAGACGGGAGGTCGAGG
GTGAGTTGGCGCCGAAGACGATTTGCTGCTGTCGCTGGCTGCTGGGGCAC
AGGATCGATCACGCAGCCAGTTAGCTTATCGTGTGTTGCTGTGGTATGTG
CAAGCCTCTGCTTTGATACGAGTTTTGCAAGGGCTGCGGGAACGGATCTT
CGTTTTCTTTTTCCCCGTTGCTCGACAACTCGCTCTCAGTGGGCACACGC
TGCACGACGACCCCTGCGAAGAGGAGATACACCACCAAAATCAACGCATT
ATCTTAGCACCGGGGGGGGGGTTGCACAGAAGAAGCCACAACTCGGACGA
GTTAGAAAAGGGCACGGTACAAACAATGGCATTACTCGTAAATGCCGCCT
GGCGACGTGATTGCCCCCCCCCACAAAAAAACATCTAATACCCCGAGCAG
GTGAAGGATTACAAAAATGACTGTGGCTTTTTCTCGAACGGGTACAAGCT
GGGCCAGCCAAGAATCTCACTTTCGTTGTTTCGCATCTCATGCAGACGTT
TCGACGAATTTAGGCTTGAAACTTGGTGGCTGCTCTTATAAGACAATAGG
GGAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig12010:712..1715+

>mRNA_E-siliculosus-1a_F_contig12010.1295.1 ID=mRNA_E-siliculosus-1a_F_contig12010.1295.1|Name=mRNA_E-siliculosus-1a_F_contig12010.1295.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1344bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12010:712..1715+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGATACAATGGACACAGACGCTCTTCTGGGGATGTCCTTGGATGAGAT
GCTCGCAGCAAAGCCGAAGAAAAAAGTTGATAGAGGAGGCCGAGGCGGGA
AAGTGAGGAACACCGGCCGAGCCTCTCGACAACAGCAAACCCAACCATAC
CGTCAACCTGCTCCAAAGGGTTCTGTAGGAGGGGGGTCTAACAACAGAGT
TTACGTCGGCAATTTGGCGTGGACCGTGACGTGGAAGGAGCTGAAGGATC
TGATGAGCACATGCGGCCCCTGCAAGGCTGAAGTCCCATGCGGTGCAGAC
GGGAGGTCGAGGGTGAGTTGGCGCCGAAGACGATTTGCTGCTGTCGCTGG
CTGCTGGGGCACAGGATCGATCACGCAGCCAGTTAGCTTATCGTGTGTTG
CTGTGGTATGTGCAAGCCTCTGCTTTGATACGAGTTTTGCAAGGGCTGCG
GGAACGGATCTTCGTTTTCTTTTTCCCCGTTGCTCGACAACTCGCTCTCA
GTGGGCACACGCTGCACGACGACCCCTGCGAAGAGGAGATACACCACCAA
AATCAACGCATTATCTTAGCACCGGGGGGGGGGTTGCACAGAAGAAGCCA
CAACTCGGACGAGTTAGAAAAGGGCACGGTACAAACAATGGCATTACTCG
TAAATGCCGCCTGGCGACGTGAATGGATACAATGGACACAGACGCTCTTC
TGGGGATGTCCTTGGATGAGATGCTCGCAGCAAAGCCGAAGAAAAAAGTT
GATAGAGGAGGCCGAGGCGGGAAAGTGAGGAACACCGGCCGAGCCTCTCG
ACAACAGCAAACCCAACCATACCGTCAACCTGCTCCAAAGGGTTCTGTAG
GAGGGGGGTCTAACAACAGAGTTTACGTCGGCAATTTGGCGTGGACCGTG
ACGTGGAAGGAGCTGAAGGATCTGATGAGCACATGCGGCCCCTGCAAGGC
TGAAGTCCCATGCGGTGCAGACGGGAGGTCGAGGGTGAGTTGGCGCCGAA
GACGATTTGCTGCTGTCGCTGGCTGCTGGGGCACAGGATCGATCACGCAG
CCAGTTAGCTTATCGTGTGTTGCTGTGGTATGTGCAAGCCTCTGCTTTGA
TACGAGTTTTGCAAGGGCTGCGGGAACGGATCTTCGTTTTCTTTTTCCCC
GTTGCTCGACAACTCGCTCTCAGTGGGCACACGCTGCACGACGACCCCTG
CGAAGAGGAGATACACCACCAAAATCAACGCATTATCTTAGCACCGGGGG
GGGGGTTGCACAGAAGAAGCCACAACTCGGACGAGTTAGAAAAGGGCACG
GTACAAACAATGGCATTACTCGTAAATGCCGCCTGGCGACGTGA
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