prot_E-siliculosus-1a_F_contig1199.1258.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig1199.1258.1
Unique Nameprot_E-siliculosus-1a_F_contig1199.1258.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length189
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1199.1258.1 vs. uniprot
Match: A0A6H5JJG7_9PHAE (HSP40 like protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJG7_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 4.390e-10
Identity = 28/29 (96.55%), Postives = 28/29 (96.55%), Query Frame = 0 
Query:    4 YNQHNPFPHGMRDPFEMFESFFGRAGANN 32
            YNQ NPFPHGMRDPFEMFESFFGRAGANN
Sbjct:   96 YNQQNPFPHGMRDPFEMFESFFGRAGANN 124
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BLAST of mRNA_E-siliculosus-1a_F_contig1199.1258.1 vs. uniprot
Match: D8LSR9_ECTSI (Heat shock protein 40 like protein/ DnaJ domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSR9_ECTSI)

HSP 1 Score: 66.6 bits (161), Expect = 7.590e-10
Identity = 129/165 (78.18%), Postives = 130/165 (78.79%), Query Frame = 0 
Query:    4 YNQHNPFPHGMRDPFEMFESFFGRAGANNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFGKRGLGRRCWNLSPGHGFMMGGDDFFGGGXXXXXFXXXXXXXXXXXXXXXXSNMGGGVSTXXXXX--TTIGADGVRR 166
            YNQHN FPHGMRDPFEMFESFFGRAGANNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX         L +   NL PGHGFMMG          XXX XXXXXXXXXXXXXXXX  MGGGVST       TTIGADGVRR
Sbjct:   96 YNQHNAFPHGMRDPFEMFESFFGRAGANNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFA-------LQQPAGNLFPGHGFMMGXXXXX-----XXXXXXXXXXXXXXXXXXXXXXMGGGVSTSTSTSRSTTIGADGVRR 248
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1199.1258.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JJG7_9PHAE4.390e-1096.55HSP40 like protein n=1 Tax=Ectocarpus sp. CCAP 131... [more]
D8LSR9_ECTSI7.590e-1078.18Heat shock protein 40 like protein/ DnaJ domain co... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableTMHMMTMhelixcoord: 116..135
NoneNo IPR availableTMHMMTMhelixcoord: 28..50

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1199contigE-siliculosus-1a_F_contig1199:34050..35837 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1199.1258.1mRNA_E-siliculosus-1a_F_contig1199.1258.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig1199 34050..35837 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig1199.1258.1 ID=prot_E-siliculosus-1a_F_contig1199.1258.1|Name=mRNA_E-siliculosus-1a_F_contig1199.1258.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=189bp
QHQYNQHNPFPHGMRDPFEMFESFFGRAGANNGGGIGGGMFGMMGAGGFF
DQDPFFGGGSGGGGGGVGGSGGRSGGGSRRGGGGGGGGGGFGKRGLGRRC
WNLSPGHGFMMGGDDFFGGGGGGGGFGGFGGGSGFSMSSMSSSNMGGGVS
TSTSTSTTIGADGVRRTKSRTEKTVVHPDGTRETKARG*
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