mRNA_E-siliculosus-1a_F_contig1199.1258.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1199.1258.1
Unique NamemRNA_E-siliculosus-1a_F_contig1199.1258.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1199.1258.1 vs. uniprot
Match: A0A6H5JJG7_9PHAE (HSP40 like protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJG7_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 4.390e-10
Identity = 28/29 (96.55%), Postives = 28/29 (96.55%), Query Frame = 1 
Query:   10 YNQHNPFPHGMRDPFEMFESFFGRAGANN 96
            YNQ NPFPHGMRDPFEMFESFFGRAGANN
Sbjct:   96 YNQQNPFPHGMRDPFEMFESFFGRAGANN 124
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BLAST of mRNA_E-siliculosus-1a_F_contig1199.1258.1 vs. uniprot
Match: D8LSR9_ECTSI (Heat shock protein 40 like protein/ DnaJ domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSR9_ECTSI)

HSP 1 Score: 66.6 bits (161), Expect = 7.590e-10
Identity = 129/165 (78.18%), Postives = 130/165 (78.79%), Query Frame = 1 
Query:   10 YNQHNPFPHGMRDPFEMFESFFGRAGANNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFGKRGLGRRCWNLSPGHGFMMGGDDFFGGGXXXXXFXXXXXXXXXXXXXXXXSNMGGGVSTXXXXX--TTIGADGVRR 498
            YNQHN FPHGMRDPFEMFESFFGRAGANNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX         L +   NL PGHGFMMG          XXX XXXXXXXXXXXXXXXX  MGGGVST       TTIGADGVRR
Sbjct:   96 YNQHNAFPHGMRDPFEMFESFFGRAGANNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFA-------LQQPAGNLFPGHGFMMGXXXXX-----XXXXXXXXXXXXXXXXXXXXXXMGGGVSTSTSTSRSTTIGADGVRR 248
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1199.1258.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JJG7_9PHAE4.390e-1096.55HSP40 like protein n=1 Tax=Ectocarpus sp. CCAP 131... [more]
D8LSR9_ECTSI7.590e-1078.18Heat shock protein 40 like protein/ DnaJ domain co... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1199contigE-siliculosus-1a_F_contig1199:34050..35837 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size567
Model size567
Exons2
Ec32 orthologEc-15_002850.1
Ec32 ortholog descriptionHeat shock protein 40 like protein/ DnaJ domain containing protein
Hectar predicted targeting categoryother localisation
BRITEko00000,ko03110
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.O
EggNOG OGsCOG0484@1,KOG0714@2759
EggNOG free text desc.protein folding
KEGG koko:K09512
Seed eggNOG ortholog2880.D8LSR9
Seed ortholog evalue1.4e-08
Seed ortholog score66.6
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927715.9346259-CDS-E-siliculosus-1a_F_contig1199:34049..343151622927715.9346259-CDS-E-siliculosus-1a_F_contig1199:34049..34315Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1199 34050..34315 -
1696318651.383605-CDS-E-siliculosus-1a_F_contig1199:34049..343151696318651.383605-CDS-E-siliculosus-1a_F_contig1199:34049..34315Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1199 34050..34315 -
1622927715.9508567-CDS-E-siliculosus-1a_F_contig1199:35536..358371622927715.9508567-CDS-E-siliculosus-1a_F_contig1199:35536..35837Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1199 35537..35837 -
1696318651.395177-CDS-E-siliculosus-1a_F_contig1199:35536..358371696318651.395177-CDS-E-siliculosus-1a_F_contig1199:35536..35837Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1199 35537..35837 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1199.1258.1prot_E-siliculosus-1a_F_contig1199.1258.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1199 34050..35837 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1199.1258.1

>prot_E-siliculosus-1a_F_contig1199.1258.1 ID=prot_E-siliculosus-1a_F_contig1199.1258.1|Name=mRNA_E-siliculosus-1a_F_contig1199.1258.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=189bp
QHQYNQHNPFPHGMRDPFEMFESFFGRAGANNGGGIGGGMFGMMGAGGFF
DQDPFFGGGSGGGGGGVGGSGGRSGGGSRRGGGGGGGGGGFGKRGLGRRC
WNLSPGHGFMMGGDDFFGGGGGGGGFGGFGGGSGFSMSSMSSSNMGGGVS
TSTSTSTTIGADGVRRTKSRTEKTVVHPDGTRETKARG*
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mRNA from alignment at E-siliculosus-1a_F_contig1199:34050..35837-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1199.1258.1 ID=mRNA_E-siliculosus-1a_F_contig1199.1258.1|Name=mRNA_E-siliculosus-1a_F_contig1199.1258.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1788bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1199:34050..35837- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CAACACCAGTACAACCAGCACAACCCCTTCCCGCACGGGATGCGAGACCC
GTTCGAGATGTTCGAGTCCTTCTTTGGGAGAGCGGGGGCTAACAACGGTG
GCGGAATCGGAGGAGGCATGTTCGGAATGATGGGCGCGGGTGGCTTCTTC
GACCAGGACCCGTTCTTTGGCGGCGGCAGCGGCGGCGGCGGCGGCGGGGT
GGGTGGCAGCGGTGGCCGTAGCGGGGGCGGTTCGCGGCGCGGCGGCGGCG
GCGGCGGTGGTGGCGGAGGATTCGGTAAGAGGGGGTTAGGCCGACGATGT
TGTTCTCGCGTTCCTTCCTACAGAGTAGGTGACTCCGCTTTTTAAGGACA
GCTATGGTTGTTCTTCACAGAACAGATAGCTTTTTTTTTTTCCTTCGGTT
TTTATACCTGTAGTGATTTTTTTTTCTCTTTGCGGAATATGATGTCCCTT
GTAGGGGGCGGTGTCGTTTAAGCGGGGGGTATCCTTGATACGCAAGGGGA
GATGGTACGCATGTTTTGCAGGCAATAGTGGGTAGACCACTGACCACGCG
TCCTCGAGAGGACGGAGCATGTAGCATTGCCCTTCACGGGGGGAGGTATC
GTCATAGCGGAGATGACTGTAGACTGTGCTACGTCCACTGGTGGACACGG
CTTGACAGAGCTTTCGGCGACACACCTTTTGGTGGTGCGATGCAGAGAGA
TGCACGCGTCAGTGCAATGATTGTACATTGCAGGTCCGGTTCCGTCAATA
ATAGTGCGGGGACCAGTTACAGGTGCAGGGGCCCGATGTTGTTGTGTGGT
AAGAACCCCGGAACAAGGGGGTTTTGGCGACTGAGCTGACTAAAGACAGT
GCGGGAATCCCGCATTAGAGAGGTTATTTTTTCTTGCCGTCATTCCGCGC
TTTCGAGGTACAGCAGTACCGTGACTGCATGGGCATACCACGACCGATAA
TATTCAACAACAGCAACAGTGGCACCAGGTACAGTAGTGGCCATCAGATC
CAGCAGGGGCATCAGATCCAGTAGTACCAGGTCCAGTTGTGGCACCAGAT
CCAGTACTCGTTTGAGTGCAGGTCGTGCTTCACCCCATACCATATTAGGG
TGCATCCGTGCAACCGCAGACCCACCTGTCGTCTATACCATTACGGGCCT
GTATCACGGCTTTGTGCTCCTGGGGGCATGGTTTCCTGCGGTTCATCTTT
ACGAGGCCCTGCCCTGGTTGTTGCTACTATCATATGTTTGAACTGCACCC
ATCCAGCCGCGAGCACTCCAGCCCTCCGTGTGACGTAACCGATTATTTCC
CTCCTGTTTTTCCGTCTCGACTACTTGTACTGTCGTGGTGTACGTCATAT
CGCGACGTCGACCCCGCGCGTGCGGTTCGGCTTCTTCCGCCCCACGACTT
CCCAATAACAACGGCCAATCACCCCTGCTGCCACCACTTACCACTGCCTC
CACTACTTCGACGACTACACAACAACTACGAAATGGAAACGACGACGACG
ACGACGCTGCAACAACCGGCAGGGAACCTCTCCCCCGGTCACGGCTTCAT
GATGGGCGGCGACGACTTCTTCGGCGGCGGCGGTGGCGGCGGCGGCTTCG
GCGGCTTCGGCGGCGGTAGCGGCTTCAGCATGAGCAGCATGAGCAGCAGC
AATATGGGCGGAGGGGTTTCCACCAGCACGTCGACGTCTACGACGATCGG
TGCCGACGGCGTCCGCCGCACCAAGTCCAGGACCGAGAAGACGGTGGTGC
ACCCGGACGGGACGAGAGAAACCAAGGCAAGAGGATAA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1199:34050..35837-

>mRNA_E-siliculosus-1a_F_contig1199.1258.1 ID=mRNA_E-siliculosus-1a_F_contig1199.1258.1|Name=mRNA_E-siliculosus-1a_F_contig1199.1258.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1134bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1199:34050..35837- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CAACACCAGTACAACCAGCACAACCCCTTCCCGCACGGGATGCGAGACCC
GTTCGAGATGTTCGAGTCCTTCTTTGGGAGAGCGGGGGCTAACAACGGTG
GCGGAATCGGAGGAGGCATGTTCGGAATGATGGGCGCGGGTGGCTTCTTC
GACCAGGACCCGTTCTTTGGCGGCGGCAGCGGCGGCGGCGGCGGCGGGGT
GGGTGGCAGCGGTGGCCGTAGCGGGGGCGGTTCGCGGCGCGGCGGCGGCG
GCGGCGGTGGTGGCGGAGGATTCGGTAAGAGGGGGTTAGGCCGACGATGT
TCAACACCAGTACAACCAGCACAACCCCTTCCCGCACGGGATGCGAGACC
CGTTCGAGATGTTCGAGTCCTTCTTTGGGAGAGCGGGGGCTAACAACGGT
GGCGGAATCGGAGGAGGCATGTTCGGAATGATGGGCGCGGGTGGCTTCTT
CGACCAGGACCCGTTCTTTGGCGGCGGCAGCGGCGGCGGCGGCGGCGGGG
TGGGTGGCAGCGGTGGCCGTAGCGGGGGCGGTTCGCGGCGCGGCGGCGGC
GGCGGCGGTGGTGGCGGAGGATTCGGTAAGAGGGGGTTAGGCCGACGATG
TTGGAACCTCTCCCCCGGTCACGGCTTCATGATGGGCGGCGACGACTTCT
TCGGCGGCGGCGGTGGCGGCGGCGGCTTCGGCGGCTTCGGCGGCGGTAGC
GGCTTCAGCATGAGCAGCATGAGCAGCAGCAATATGGGCGGAGGGGTTTC
CACCAGCACGTCGACGTCTACGACGATCGGTGCCGACGGCGTCCGCCGCA
CCAAGTCCAGGACCGAGAAGACGGTGGTGCACCCGGACGGGACGAGAGAA
ACCAAGGCAAGAGGATAAGGAACCTCTCCCCCGGTCACGGCTTCATGATG
GGCGGCGACGACTTCTTCGGCGGCGGCGGTGGCGGCGGCGGCTTCGGCGG
CTTCGGCGGCGGTAGCGGCTTCAGCATGAGCAGCATGAGCAGCAGCAATA
TGGGCGGAGGGGTTTCCACCAGCACGTCGACGTCTACGACGATCGGTGCC
GACGGCGTCCGCCGCACCAAGTCCAGGACCGAGAAGACGGTGGTGCACCC
GGACGGGACGAGAGAAACCAAGGCAAGAGGATAA
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