prot_E-siliculosus-1a_F_contig1196.1246.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig1196.1246.1
Unique Nameprot_E-siliculosus-1a_F_contig1196.1246.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length1094
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1196.1246.1 vs. uniprot
Match: D7FWM3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWM3_ECTSI)

HSP 1 Score: 1347 bits (3486), Expect = 0.000e+0
Identity = 954/1076 (88.66%), Postives = 962/1076 (89.41%), Query Frame = 0 
Query:   30 MVHASAVSPAFLHTSGSTGTHVAFVAQPTVQRERRSLAPKLSTRSRAPVTRRPQAPRGIVSSDGXXXXXXXXXXXXXV-GPAAGHSEEQVAWLGRLDYYGGRQMWRKAEDKFQQMQDEGVYPTLPLCNSLMEAYLKGKRYVNAVGFLEDLCLGNILSDVAHDGLRGAKVAPAASGXXXXXXXXX---AGGTAVATAPIVPNLRTFNLVLATLASAGKWKKALDVSAPMRAGKDPTAASAXXXXXXXXXXXXXXXXXXXXXGDLARNAVKSVAGGLTADAETYTHLIVACGKGGEPDRRSRQLFDEMRSRGISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAASAAAAAQGGAAGRSGGVYLRGGMPSEGMEAAAREKSEAAAQSLGFEGAIEACAANGEWQKAVSLLDEMRQARMYPDARCYGNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRASEEGGLELDVVSYRAALGGLRREKRWEAAVKLLGDMQRRGLGPDEVCTAMAMNTCVAAQQPLRALDLFRDMRDVGRVFPRISSVTALLEAHAALGRWEDALVELRALSASGVKPDGRAIAFAMAACNAARKWEQTISLYHYALKMGIESSMEGLVLVARAYGAGKDWQAVLGVLATAEEACSSXXXXXXXXXXX---------TMKHPPAELYEVVARSLALAGMWEEAASAVRRLEKLSPRKTREGAGAAARTSAAGLGTYEMILGAALAAGCFEAVLAQADAARAALRDASSSPSTSSEYDHGAS-----RGGGGGVRELNPAALAHEAAAAGRLGQWDRVSPLLAKAMRSPDLRGVAGSRLYAALIAAAAACGKPRRGLEVFQEMVEESRSGXXXXXXXXXXXXXXXXXXXXXXX--SGGVEWSDSVSGEDGTTGGEAMEEAFSRSXXXXXXXXXXXXGATFLAALDACAAVGGEESVTLAIGVTKDAAAAVREFQRPAGXXXXXDATKKPRLSSRQLAAVLSKAGEVCAAVGKESTALALAAKAEQLVGEAEAP 1085
            MVHASAVSPAFLHTSGSTGT VAFVAQ TVQRERRSLAPKLSTRSRAPVTRRPQAPRGIVSSDG   XXXXXXXXXXV GPAAGHSEEQVAWLGRLDYYGGRQMWRKAEDKFQQMQDEGVYPTLPLCNSLMEAYLKGKRYVNAVGFLEDLCLGNILSDVAHDGLRGAKV+PAASG XXXXXXXX   AG TAVATAPIVPNLRTFNLVLATLASAGKWKKALDVSAPMRAGKDP A S XXXXXXXXXXXXXXX      GDLARNAVKSVAGGLTAD+ETYTHLIVACGKGGEPDR SRQLFDEMRSRGIS                               AA     AQGGAAGRSGGVYL  GMPS+GM+ AAREKSEAAAQSLGFEGAIEACA NGEWQKAVSLLDEMRQARMYPDARCYGNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRASEEGGLELDVVSYRAALGGLRREKRWEAAVKLLGDMQRRGLGPDEVCTAMAMNTCVAAQQPLRALDLFRDMRDVGRVFPRISSVTALLEAHAALGRWEDALVELRALSASGVKPDGRAIAFAMAACNAARKWEQTISLYHYALKMGIESSMEGLVLVARAYGAGKDWQAVLGVLATAEEACS XXXXXXXXXX           +KHPPAELYEV ARSLALAGMWEEAASAVRRLEKLSPRKTREGAGAAARTSAAGLGTYEMILGAALAAGCFEAVLAQADAARAALRDASSSPS+SS YDHGAS     RGGGGGVRELNP ALAHEAAAAGRLGQWDRVSPLLAKAMRSPDLRGVAG RLYAALI AAAACGKPRRGLEVFQEMVEESRSGXXXXXXXXXXXX             SGGVEWSDS+SGEDGTTG  AMEEAFSRS XXXXXXXXXXX  TFLAALDACAAVGGEESVTLAIGVTKDA            XXXXXDA KKPRLSSRQLAAVLSKAGEVCAAVGKESTA+ALAAKAEQLVGEAEAP
Sbjct:    1 MVHASAVSPAFLHTSGSTGTRVAFVAQQTVQRERRSLAPKLSTRSRAPVTRRPQAPRGIVSSDGGSGXXXXXXXXXXVVGPAAGHSEEQVAWLGRLDYYGGRQMWRKAEDKFQQMQDEGVYPTLPLCNSLMEAYLKGKRYVNAVGFLEDLCLGNILSDVAHDGLRGAKVSPAASGSXXXXXXXXXXEAGETAVATAPIVPNLRTFNLVLATLASAGKWKKALDVSAPMRAGKDPAAGSXXXXXXXXXXXXXXXX------GDLARNAVKSVAGGLTADSETYTHLIVACGKGGEPDR-SRQLFDEMRSRGISPPAEATAALIKALAKGGRGSSEALRLLGDMRAA-----AQGGAAGRSGGVYLGDGMPSDGMDGAAREKSEAAAQSLGFEGAIEACAVNGEWQKAVSLLDEMRQARMYPDARCYGNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRASEEGGLELDVVSYRAALGGLRREKRWEAAVKLLGDMQRRGLGPDEVCTAMAMNTCVAAQQPLRALDLFRDMRDVGRVFPRISSVTALLEAHAALGRWEDALVELRALSASGVKPDGRAIAFAMAACNAARKWEQTISLYHYALKMGIESSMEGLVLVARAYGAGKDWQAVLGVLATAEEACSXXXXXXXXXXXRGGERAAAVPAVKHPPAELYEVAARSLALAGMWEEAASAVRRLEKLSPRKTREGAGAAARTSAAGLGTYEMILGAALAAGCFEAVLAQADAARAALRDASSSPSSSSGYDHGASQGGQGRGGGGGVRELNPGALAHEAAAAGRLGQWDRVSPLLAKAMRSPDLRGVAGCRLYAALITAAAACGKPRRGLEVFQEMVEESRSGXXXXXXXXXXXXVDAAVLGAAAAVVSGGVEWSDSMSGEDGTTGEVAMEEAFSRSGXXXXXXXXXXXXXTFLAALDACAAVGGEESVTLAIGVTKDAXXXXXXXXXXXXXXXXXDA-KKPRLSSRQLAAVLSKAGEVCAAVGKESTAIALAAKAEQLVGEAEAP 1063
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1196.1246.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FWM3_ECTSI0.000e+088.66Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 419..447
e-value: 1.2E-4
score: 20.0
coord: 306..338
e-value: 2.7E-5
score: 22.0
coord: 485..517
e-value: 2.9E-4
score: 18.8
coord: 554..588
e-value: 3.7E-5
score: 21.6
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 483..523
e-value: 3.7E-8
score: 33.4
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 297..350
e-value: 0.0076
score: 16.3
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 419..441
e-value: 0.016
score: 15.4
coord: 554..584
e-value: 0.032
score: 14.5
coord: 894..920
e-value: 0.076
score: 13.3
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 411..445
score: 8.385
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 552..586
score: 10.852
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 587..621
score: 6.467
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 516..550
score: 8.758
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 623..657
score: 8.046
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 339..374
score: 7.213
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 481..515
score: 10.38
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 743..777
score: 5.941
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 446..480
score: 8.517
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 116..150
score: 7.541
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 890..920
score: 7.859
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 151..185
score: 5.941
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 303..338
score: 12.145
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 226..260
score: 7.158
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 658..692
score: 5.733
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 586..742
e-value: 2.6E-15
score: 58.8
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 394..527
e-value: 3.1E-26
score: 93.8
coord: 281..376
e-value: 3.4E-12
score: 48.1
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 299..368
coord: 126..261
coord: 419..542
coord: 530..703
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..33
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 15..25
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..14
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 34..1093
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 26..33

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1196contigE-siliculosus-1a_F_contig1196:6344..20722 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1196.1246.1mRNA_E-siliculosus-1a_F_contig1196.1246.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig1196 6337..21287 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig1196.1246.1 ID=prot_E-siliculosus-1a_F_contig1196.1246.1|Name=mRNA_E-siliculosus-1a_F_contig1196.1246.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=1094bp
MWMGRPRQRSTGIPSSVPAAVLLVARRLSMVHASAVSPAFLHTSGSTGTH
VAFVAQPTVQRERRSLAPKLSTRSRAPVTRRPQAPRGIVSSDGGNTSGGG
GGGGIVVGPAAGHSEEQVAWLGRLDYYGGRQMWRKAEDKFQQMQDEGVYP
TLPLCNSLMEAYLKGKRYVNAVGFLEDLCLGNILSDVAHDGLRGAKVAPA
ASGSSSSSSSEEAGGTAVATAPIVPNLRTFNLVLATLASAGKWKKALDVS
APMRAGKDPTAASAAAGGGGSGGGRGRGGGGGRGKGDLARNAVKSVAGGL
TADAETYTHLIVACGKGGEPDRRSRQLFDEMRSRGISPPAETTAALIKAL
AKGGRGSSEALRLLGDMRAASAAAAAQGGAAGRSGGVYLRGGMPSEGMEA
AAREKSEAAAQSLGFEGAIEACAANGEWQKAVSLLDEMRQARMYPDARCY
GNAMRACAAGGNWQLSLALLNTMKKEGVTRTAFNYNIAMQACRKAERNKK
AISLLDEMEKDGVAPDIVTYNTCVTIAGQAGRLDQALELLRRASEEGGLE
LDVVSYRAALGGLRREKRWEAAVKLLGDMQRRGLGPDEVCTAMAMNTCVA
AQQPLRALDLFRDMRDVGRVFPRISSVTALLEAHAALGRWEDALVELRAL
SASGVKPDGRAIAFAMAACNAARKWEQTISLYHYALKMGIESSMEGLVLV
ARAYGAGKDWQAVLGVLATAEEACSSAAANAAAAAAATMKHPPAELYEVV
ARSLALAGMWEEAASAVRRLEKLSPRKTREGAGAAARTSAAGLGTYEMIL
GAALAAGCFEAVLAQADAARAALRDASSSPSTSSEYDHGASRGGGGGVRE
LNPAALAHEAAAAGRLGQWDRVSPLLAKAMRSPDLRGVAGSRLYAALIAA
AAACGKPRRGLEVFQEMVEESRSGGGGAGGNGDGGDAAALGAAAAVASGG
VEWSDSVSGEDGTTGGEAMEEAFSRSGGGGERRLPPPDGATFLAALDACA
AVGGEESVTLAIGVTKDAAAAVREFQRPAGGGGGGDATKKPRLSSRQLAA
VLSKAGEVCAAVGKESTALALAAKAEQLVGEAEAPEGRGADRP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat