mRNA_E-siliculosus-1a_F_contig1196.1246.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1196.1246.1 vs. uniprot
Match: D7FWM3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWM3_ECTSI) HSP 1 Score: 1347 bits (3487), Expect = 0.000e+0 Identity = 954/1076 (88.66%), Postives = 962/1076 (89.41%), Query Frame = 2
Query: 95 MVHASAVSPAFLHTSGSTGTHVAFVAQPTVQRERRSLAPKLSTRSRAPVTRRPQAPRGIVSSDGXXXXXXXXXXXXXV-GPAAGHSEEQVAWLGRLDYYGGRQMWRKAEDKFQQMQDEGVYPTLPLCNSLMEAYLKGKRYVNAVGFLEDLCLGNILSDVAHDGLRGAKVAPAASGXXXXXXXXX---AGGTAVATAPIVPNLRTFNLVLATLASAGKWKKALDVSAPMRAGKDPTAASAXXXXXXXXXXXXXXXXXXXXXGDLARNAVKSVAGGLTADAETYTHLIVACGKGGEPDRRSRQLFDEMRSRGISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAASAAAAAQGGAAGRSGGVYLRGGMPSEGMEAAAREKSEAAAQSLGFEGAIEACAANGEWQKAVSLLDEMRQARMYPDARCYGNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRASEEGGLELDVVSYRAALGGLRREKRWEAAVKLLGDMQRRGLGPDEVCTAMAMNTCVAAQQPLRALDLFRDMRDVGRVFPRISSVTALLEAHAALGRWEDALVELRALSASGVKPDGRAIAFAMAACNAARKWEQTISLYHYALKMGIESSMEGLVLVARAYGAGKDWQAVLGVLATAEEACSSXXXXXXXXXXX---------TMKHPPAELYEVVARSLALAGMWEEAASAVRRLEKLSPRKTREGAGAAARTSAAGLGTYEMILGAALAAGCFEAVLAQADAARAALRDASSSPSTSSEYDHGAS-----RGGGGGVRELNPAALAHEAAAAGRLGQWDRVSPLLAKAMRSPDLRGVAGSRLYAALIAAAAACGKPRRGLEVFQEMVEESRSGXXXXXXXXXXXXXXXXXXXXXXX--SGGVEWSDSVSGEDGTTGGEAMEEAFSRSXXXXXXXXXXXXGATFLAALDACAAVGGEESVTLAIGVTKDAAAAVREFQRPAGXXXXXDATKKPRLSSRQLAAVLSKAGEVCAAVGKESTALALAAKAEQLVGEAEAP 3262
MVHASAVSPAFLHTSGSTGT VAFVAQ TVQRERRSLAPKLSTRSRAPVTRRPQAPRGIVSSDG XXXXXXXXXXV GPAAGHSEEQVAWLGRLDYYGGRQMWRKAEDKFQQMQDEGVYPTLPLCNSLMEAYLKGKRYVNAVGFLEDLCLGNILSDVAHDGLRGAKV+PAASG XXXXXXXX AG TAVATAPIVPNLRTFNLVLATLASAGKWKKALDVSAPMRAGKDP A S XXXXXXXXXXXXXXX GDLARNAVKSVAGGLTAD+ETYTHLIVACGKGGEPDR SRQLFDEMRSRGIS AA AQGGAAGRSGGVYL GMPS+GM+ AAREKSEAAAQSLGFEGAIEACA NGEWQKAVSLLDEMRQARMYPDARCYGNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRASEEGGLELDVVSYRAALGGLRREKRWEAAVKLLGDMQRRGLGPDEVCTAMAMNTCVAAQQPLRALDLFRDMRDVGRVFPRISSVTALLEAHAALGRWEDALVELRALSASGVKPDGRAIAFAMAACNAARKWEQTISLYHYALKMGIESSMEGLVLVARAYGAGKDWQAVLGVLATAEEACS XXXXXXXXXX +KHPPAELYEV ARSLALAGMWEEAASAVRRLEKLSPRKTREGAGAAARTSAAGLGTYEMILGAALAAGCFEAVLAQADAARAALRDASSSPS+SS YDHGAS RGGGGGVRELNP ALAHEAAAAGRLGQWDRVSPLLAKAMRSPDLRGVAG RLYAALI AAAACGKPRRGLEVFQEMVEESRSGXXXXXXXXXXXX SGGVEWSDS+SGEDGTTG AMEEAFSRS XXXXXXXXXXX TFLAALDACAAVGGEESVTLAIGVTKDA XXXXXDA KKPRLSSRQLAAVLSKAGEVCAAVGKESTA+ALAAKAEQLVGEAEAP
Sbjct: 1 MVHASAVSPAFLHTSGSTGTRVAFVAQQTVQRERRSLAPKLSTRSRAPVTRRPQAPRGIVSSDGGSGXXXXXXXXXXVVGPAAGHSEEQVAWLGRLDYYGGRQMWRKAEDKFQQMQDEGVYPTLPLCNSLMEAYLKGKRYVNAVGFLEDLCLGNILSDVAHDGLRGAKVSPAASGSXXXXXXXXXXEAGETAVATAPIVPNLRTFNLVLATLASAGKWKKALDVSAPMRAGKDPAAGSXXXXXXXXXXXXXXXX------GDLARNAVKSVAGGLTADSETYTHLIVACGKGGEPDR-SRQLFDEMRSRGISPPAEATAALIKALAKGGRGSSEALRLLGDMRAA-----AQGGAAGRSGGVYLGDGMPSDGMDGAAREKSEAAAQSLGFEGAIEACAVNGEWQKAVSLLDEMRQARMYPDARCYGNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRASEEGGLELDVVSYRAALGGLRREKRWEAAVKLLGDMQRRGLGPDEVCTAMAMNTCVAAQQPLRALDLFRDMRDVGRVFPRISSVTALLEAHAALGRWEDALVELRALSASGVKPDGRAIAFAMAACNAARKWEQTISLYHYALKMGIESSMEGLVLVARAYGAGKDWQAVLGVLATAEEACSXXXXXXXXXXXRGGERAAAVPAVKHPPAELYEVAARSLALAGMWEEAASAVRRLEKLSPRKTREGAGAAARTSAAGLGTYEMILGAALAAGCFEAVLAQADAARAALRDASSSPSSSSGYDHGASQGGQGRGGGGGVRELNPGALAHEAAAAGRLGQWDRVSPLLAKAMRSPDLRGVAGCRLYAALITAAAACGKPRRGLEVFQEMVEESRSGXXXXXXXXXXXXVDAAVLGAAAAVVSGGVEWSDSMSGEDGTTGEVAMEEAFSRSGXXXXXXXXXXXXXTFLAALDACAAVGGEESVTLAIGVTKDAXXXXXXXXXXXXXXXXXDA-KKPRLSSRQLAAVLSKAGEVCAAVGKESTAIALAAKAEQLVGEAEAP 1063 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1196.1246.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1196.1246.1 >prot_E-siliculosus-1a_F_contig1196.1246.1 ID=prot_E-siliculosus-1a_F_contig1196.1246.1|Name=mRNA_E-siliculosus-1a_F_contig1196.1246.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=1094bp MWMGRPRQRSTGIPSSVPAAVLLVARRLSMVHASAVSPAFLHTSGSTGTHback to top mRNA from alignment at E-siliculosus-1a_F_contig1196:6337..21287+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1196.1246.1 ID=mRNA_E-siliculosus-1a_F_contig1196.1246.1|Name=mRNA_E-siliculosus-1a_F_contig1196.1246.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=14951bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1196:6337..21287+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1196:6337..21287+ >mRNA_E-siliculosus-1a_F_contig1196.1246.1 ID=mRNA_E-siliculosus-1a_F_contig1196.1246.1|Name=mRNA_E-siliculosus-1a_F_contig1196.1246.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=6564bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1196:6337..21287+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |