prot_E-siliculosus-1a_F_contig1195.1239.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig1195.1239.1
Unique Nameprot_E-siliculosus-1a_F_contig1195.1239.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length491
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1195.1239.1 vs. uniprot
Match: D8LID6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LID6_ECTSI)

HSP 1 Score: 843 bits (2177), Expect = 9.190e-307
Identity = 439/471 (93.21%), Postives = 448/471 (95.12%), Query Frame = 0 
Query:   27 MRDAREDLSWDRRQNLGRGGDAAPPRLSATGFRSLATLLRQRVRADEIDAAAPPALRSENLAGKVVAGPSNYFSVDWTETRPRKTCTLLSLCIRQIGRDFLAYRADDDAVAEAFLLLPSPCLSRLSRSASARGNVADHNIGLLCSPGVSTLWLRGRFTDEGAGSLLPALNAGDRPNGGSHAAELAEVYRDGTAADCKAGNAVDT-------VASGDDGLVASTQPAVYHAAAGEAVVEGAEEDWETACDRIEASLRGGVSLTSLDLSSPRVTAGFVKRLTARIPSLRRLGLRGSLGVVGGPDFVCDHVPRLAALRELDVSHCTWFCDLTLRRLAKSLSLRASPAAGDPENQGPHAGSATSLQDLDEAETRGWGAAFAPSMNNLAFAEHAGSGPSGSDAELVSEASRESGEKELSSLGWSLHRFRTFTVVCARTAVTEKGAKAAELMSPGLMVVLVADKPAAAGGALSLASS 490
            MRDAREDLSWDRRQNLGRGGDAAPPRLSATGFRSLATLLRQRVRADEIDA APPA+RSENLAGKVVA PSNYFS DWTETRPRKTCTLLSLCIRQIGRDFLAYRADDDA+AEAFLLLPSPCLSRLSRSASA GNVADHNIGLLCSPGVSTLWLRGRFTDEG G+LLPALNAG+RPNGGSHAAELAEVYRDGTAADC AGNAVDT       VASGDDGLVA  QPA YHAAAGEA+VEGAEE+WETACDRIEASLRGGVSLTSLDLSSPRVTAGFVKRLTARIPSLRRLGLRGS GVVGGPDFVCDHVPRLAALRELD+SHCTWFCDLTLRRLAKSLSLRASPAAGDPENQGPHAGSAT LQDLDEAETRGWGAAFAPS NNLAFA HAGSGPSGSDA+LVS ASRESGEKEL SLG SLHRFRTFTVVCARTAVTEKGAKAAELMSPGLMV+LVADKPAAAGGALSLASS
Sbjct:    1 MRDAREDLSWDRRQNLGRGGDAAPPRLSATGFRSLATLLRQRVRADEIDAVAPPAVRSENLAGKVVAAPSNYFSADWTETRPRKTCTLLSLCIRQIGRDFLAYRADDDAIAEAFLLLPSPCLSRLSRSASAGGNVADHNIGLLCSPGVSTLWLRGRFTDEGVGALLPALNAGNRPNGGSHAAELAEVYRDGTAADCLAGNAVDTAMGTESRVASGDDGLVALIQPAAYHAAAGEAIVEGAEEEWETACDRIEASLRGGVSLTSLDLSSPRVTAGFVKRLTARIPSLRRLGLRGSFGVVGGPDFVCDHVPRLAALRELDLSHCTWFCDLTLRRLAKSLSLRASPAAGDPENQGPHAGSATYLQDLDEAETRGWGAAFAPSTNNLAFAGHAGSGPSGSDADLVSGASRESGEKELPSLGRSLHRFRTFTVVCARTAVTEKGAKAAELMSPGLMVILVADKPAAAGGALSLASS 471
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1195.1239.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LID6_ECTSI9.190e-30793.21Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 256..405
e-value: 5.8E-8
score: 34.0
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 272..351

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1195contigE-siliculosus-1a_F_contig1195:12676..16605 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1195.1239.1mRNA_E-siliculosus-1a_F_contig1195.1239.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig1195 12637..17349 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig1195.1239.1 ID=prot_E-siliculosus-1a_F_contig1195.1239.1|Name=mRNA_E-siliculosus-1a_F_contig1195.1239.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=491bp
MPGRKKGRQKGAAGSKAQSARRWNDAMRDAREDLSWDRRQNLGRGGDAAP
PRLSATGFRSLATLLRQRVRADEIDAAAPPALRSENLAGKVVAGPSNYFS
VDWTETRPRKTCTLLSLCIRQIGRDFLAYRADDDAVAEAFLLLPSPCLSR
LSRSASARGNVADHNIGLLCSPGVSTLWLRGRFTDEGAGSLLPALNAGDR
PNGGSHAAELAEVYRDGTAADCKAGNAVDTVASGDDGLVASTQPAVYHAA
AGEAVVEGAEEDWETACDRIEASLRGGVSLTSLDLSSPRVTAGFVKRLTA
RIPSLRRLGLRGSLGVVGGPDFVCDHVPRLAALRELDVSHCTWFCDLTLR
RLAKSLSLRASPAAGDPENQGPHAGSATSLQDLDEAETRGWGAAFAPSMN
NLAFAEHAGSGPSGSDAELVSEASRESGEKELSSLGWSLHRFRTFTVVCA
RTAVTEKGAKAAELMSPGLMVVLVADKPAAAGGALSLASS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf