mRNA_E-siliculosus-1a_F_contig1195.1239.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1195.1239.1 vs. uniprot
Match: D8LID6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LID6_ECTSI) HSP 1 Score: 843 bits (2177), Expect = 2.000e-302 Identity = 439/471 (93.21%), Postives = 448/471 (95.12%), Query Frame = 1
Query: 118 MRDAREDLSWDRRQNLGRGGDAAPPRLSATGFRSLATLLRQRVRADEIDAAAPPALRSENLAGKVVAGPSNYFSVDWTETRPRKTCTLLSLCIRQIGRDFLAYRADDDAVAEAFLLLPSPCLSRLSRSASARGNVADHNIGLLCSPGVSTLWLRGRFTDEGAGSLLPALNAGDRPNGGSHAAELAEVYRDGTAADCKAGNAVDT-------VASGDDGLVASTQPAVYHAAAGEAVVEGAEEDWETACDRIEASLRGGVSLTSLDLSSPRVTAGFVKRLTARIPSLRRLGLRGSLGVVGGPDFVCDHVPRLAALRELDVSHCTWFCDLTLRRLAKSLSLRASPAAGDPENQGPHAGSATSLQDLDEAETRGWGAAFAPSMNNLAFAEHAGSGPSGSDAELVSEASRESGEKELSSLGWSLHRFRTFTVVCARTAVTEKGAKAAELMSPGLMVVLVADKPAAAGGALSLASS 1509
MRDAREDLSWDRRQNLGRGGDAAPPRLSATGFRSLATLLRQRVRADEIDA APPA+RSENLAGKVVA PSNYFS DWTETRPRKTCTLLSLCIRQIGRDFLAYRADDDA+AEAFLLLPSPCLSRLSRSASA GNVADHNIGLLCSPGVSTLWLRGRFTDEG G+LLPALNAG+RPNGGSHAAELAEVYRDGTAADC AGNAVDT VASGDDGLVA QPA YHAAAGEA+VEGAEE+WETACDRIEASLRGGVSLTSLDLSSPRVTAGFVKRLTARIPSLRRLGLRGS GVVGGPDFVCDHVPRLAALRELD+SHCTWFCDLTLRRLAKSLSLRASPAAGDPENQGPHAGSAT LQDLDEAETRGWGAAFAPS NNLAFA HAGSGPSGSDA+LVS ASRESGEKEL SLG SLHRFRTFTVVCARTAVTEKGAKAAELMSPGLMV+LVADKPAAAGGALSLASS
Sbjct: 1 MRDAREDLSWDRRQNLGRGGDAAPPRLSATGFRSLATLLRQRVRADEIDAVAPPAVRSENLAGKVVAAPSNYFSADWTETRPRKTCTLLSLCIRQIGRDFLAYRADDDAIAEAFLLLPSPCLSRLSRSASAGGNVADHNIGLLCSPGVSTLWLRGRFTDEGVGALLPALNAGNRPNGGSHAAELAEVYRDGTAADCLAGNAVDTAMGTESRVASGDDGLVALIQPAAYHAAAGEAIVEGAEEEWETACDRIEASLRGGVSLTSLDLSSPRVTAGFVKRLTARIPSLRRLGLRGSFGVVGGPDFVCDHVPRLAALRELDLSHCTWFCDLTLRRLAKSLSLRASPAAGDPENQGPHAGSATYLQDLDEAETRGWGAAFAPSTNNLAFAGHAGSGPSGSDADLVSGASRESGEKELPSLGRSLHRFRTFTVVCARTAVTEKGAKAAELMSPGLMVILVADKPAAAGGALSLASS 471 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1195.1239.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1195.1239.1 >prot_E-siliculosus-1a_F_contig1195.1239.1 ID=prot_E-siliculosus-1a_F_contig1195.1239.1|Name=mRNA_E-siliculosus-1a_F_contig1195.1239.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=491bp MPGRKKGRQKGAAGSKAQSARRWNDAMRDAREDLSWDRRQNLGRGGDAAPback to top mRNA from alignment at E-siliculosus-1a_F_contig1195:12637..17349+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1195.1239.1 ID=mRNA_E-siliculosus-1a_F_contig1195.1239.1|Name=mRNA_E-siliculosus-1a_F_contig1195.1239.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4713bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1195:12637..17349+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1195:12637..17349+ >mRNA_E-siliculosus-1a_F_contig1195.1239.1 ID=mRNA_E-siliculosus-1a_F_contig1195.1239.1|Name=mRNA_E-siliculosus-1a_F_contig1195.1239.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2946bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1195:12637..17349+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |