prot_E-siliculosus-1a_F_contig11773.1145.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig11773.1145.1
Unique Nameprot_E-siliculosus-1a_F_contig11773.1145.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length72
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig11773.1145.1 vs. uniprot
Match: A0A6H5K6W2_9PHAE (Arginyl-tRNA synthetase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6W2_9PHAE)

HSP 1 Score: 136 bits (343), Expect = 3.190e-36
Identity = 66/68 (97.06%), Postives = 67/68 (98.53%), Query Frame = 0
Query:    5 VRLNHVGDWGTQFGMLISHLKEVAPEAIEDGAEDKASFNVGDLVTFYKEAKARFDEDDGFKEIARSEV 72
            VRLNHVGDWGTQFGMLISHLKEVAPEAIEDGAEDKASFNVGDLVTFYKEAKARFDEDDGFKE AR+EV
Sbjct:  284 VRLNHVGDWGTQFGMLISHLKEVAPEAIEDGAEDKASFNVGDLVTFYKEAKARFDEDDGFKETARAEV 351          
BLAST of mRNA_E-siliculosus-1a_F_contig11773.1145.1 vs. uniprot
Match: D8LIS7_ECTSI (Arginine--tRNA ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIS7_ECTSI)

HSP 1 Score: 130 bits (327), Expect = 8.630e-34
Identity = 65/68 (95.59%), Postives = 66/68 (97.06%), Query Frame = 0
Query:    5 VRLNHVGDWGTQFGMLISHLKEVAPEAIEDGAEDKASFNVGDLVTFYKEAKARFDEDDGFKEIARSEV 72
            VRLNHVGDWGTQFGMLISHLKEVAPEAIEDGAEDK  FNVGDLVTFYKEAKARFDEDDGFKEIAR+EV
Sbjct:  184 VRLNHVGDWGTQFGMLISHLKEVAPEAIEDGAEDK--FNVGDLVTFYKEAKARFDEDDGFKEIARAEV 249          
BLAST of mRNA_E-siliculosus-1a_F_contig11773.1145.1 vs. uniprot
Match: A0A2T2W9J6_9CYAN (Arginine--tRNA ligase n=3 Tax=Cyanobacteria TaxID=1117 RepID=A0A2T2W9J6_9CYAN)

HSP 1 Score: 95.5 bits (236), Expect = 2.530e-21
Identity = 45/68 (66.18%), Postives = 55/68 (80.88%), Query Frame = 0
Query:    5 VRLNHVGDWGTQFGMLISHLKEVAPEAIEDGAEDKASFNVGDLVTFYKEAKARFDEDDGFKEIARSEV 72
            +R+NHVGDWGTQFGMLI+HLKEV PEA+E G+    S ++GDLV FYK+AK RFD+DDGFK  +R  V
Sbjct:  158 LRINHVGDWGTQFGMLITHLKEVCPEALEAGS----SVDIGDLVAFYKQAKKRFDDDDGFKTRSREAV 221          
BLAST of mRNA_E-siliculosus-1a_F_contig11773.1145.1 vs. uniprot
Match: A0A5J4YTX5_PORPP (Arginine--tRNA ligase n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YTX5_PORPP)

HSP 1 Score: 94.0 bits (232), Expect = 9.070e-21
Identity = 46/68 (67.65%), Postives = 56/68 (82.35%), Query Frame = 0
Query:    5 VRLNHVGDWGTQFGMLISHLKEVAPEAIEDGAEDKASFNVGDLVTFYKEAKARFDEDDGFKEIARSEV 72
            +RLNHVGDWGTQFGMLI +L+EVAPEA+ DG++     ++GDLV FYK+AKARFDED  F+E AR EV
Sbjct:  243 LRLNHVGDWGTQFGMLILYLREVAPEALVDGSD----LDLGDLVVFYKKAKARFDEDPEFQESARKEV 306          
BLAST of mRNA_E-siliculosus-1a_F_contig11773.1145.1 vs. uniprot
Match: A0A0G4H8A5_VITBC (Arginine--tRNA ligase n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4H8A5_VITBC)

HSP 1 Score: 93.2 bits (230), Expect = 1.680e-20
Identity = 44/68 (64.71%), Postives = 52/68 (76.47%), Query Frame = 0
Query:    5 VRLNHVGDWGTQFGMLISHLKEVAPEAIEDGAEDKASFNVGDLVTFYKEAKARFDEDDGFKEIARSEV 72
            VRLNHVGDWGTQFGMLIS LK+V P+ IE      +S  + DLV FYKEAK RFDED+ F+E +R+EV
Sbjct:  181 VRLNHVGDWGTQFGMLISQLKDVQPDVIEQEGASASSVAISDLVAFYKEAKKRFDEDEAFQERSRNEV 248          
BLAST of mRNA_E-siliculosus-1a_F_contig11773.1145.1 vs. uniprot
Match: A0A7S2Y2C9_9STRA (Arginine--tRNA ligase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y2C9_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 1.700e-20
Identity = 46/68 (67.65%), Postives = 55/68 (80.88%), Query Frame = 0
Query:    5 VRLNHVGDWGTQFGMLISHLKEVAPEAIEDGAEDKASFNVGDLVTFYKEAKARFDEDDGFKEIARSEV 72
            VRLNHVGDWGTQFGMLI++LKEV PEA+ +      S  +GDLV FYK+AKARFDEDD FK ++R+EV
Sbjct:  345 VRLNHVGDWGTQFGMLIAYLKEVKPEALTN----PKSAAIGDLVQFYKQAKARFDEDDKFKTVSRAEV 408          
BLAST of mRNA_E-siliculosus-1a_F_contig11773.1145.1 vs. uniprot
Match: A0A7S1TGS8_9RHOD (Arginine--tRNA ligase n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TGS8_9RHOD)

HSP 1 Score: 92.0 bits (227), Expect = 3.870e-20
Identity = 47/68 (69.12%), Postives = 54/68 (79.41%), Query Frame = 0
Query:    5 VRLNHVGDWGTQFGMLISHLKEVAPEAIEDGAEDKASFNVGDLVTFYKEAKARFDEDDGFKEIARSEV 72
            +RLNHVGDWGTQFGMLI +LKE APEA    AE KA  ++GDLV FYK+AKARFD+D  F+E AR EV
Sbjct:   80 LRLNHVGDWGTQFGMLILYLKEYAPEA----AEGKAVLDLGDLVAFYKKAKARFDDDSEFQENARKEV 143          
BLAST of mRNA_E-siliculosus-1a_F_contig11773.1145.1 vs. uniprot
Match: A0A7T1MFR8_9SYNE (Arginine--tRNA ligase n=1 Tax=Synechococcus sp. CBW1004 TaxID=1353136 RepID=A0A7T1MFR8_9SYNE)

HSP 1 Score: 92.0 bits (227), Expect = 4.240e-20
Identity = 44/68 (64.71%), Postives = 55/68 (80.88%), Query Frame = 0
Query:    5 VRLNHVGDWGTQFGMLISHLKEVAPEAIEDGAEDKASFNVGDLVTFYKEAKARFDEDDGFKEIARSEV 72
            +RLNHVGDWGTQFGMLI+HLK+VAPEA+E       + ++GDLV FY++AKARFDED+ F+  AR EV
Sbjct:  164 LRLNHVGDWGTQFGMLITHLKQVAPEALEH----PDAVDLGDLVAFYRQAKARFDEDEAFQTTAREEV 227          
BLAST of mRNA_E-siliculosus-1a_F_contig11773.1145.1 vs. uniprot
Match: A0A2P8WDG4_9CYAN (Arginine--tRNA ligase n=1 Tax=filamentous cyanobacterium CCP5 TaxID=2107701 RepID=A0A2P8WDG4_9CYAN)

HSP 1 Score: 91.7 bits (226), Expect = 5.770e-20
Identity = 44/68 (64.71%), Postives = 53/68 (77.94%), Query Frame = 0
Query:    5 VRLNHVGDWGTQFGMLISHLKEVAPEAIEDGAEDKASFNVGDLVTFYKEAKARFDEDDGFKEIARSEV 72
            +RLNHVGDWGTQFGMLI+HLK   PEA+E GA    S ++GDLVTFYK+AK RFD D+ FK+ +R  V
Sbjct:  158 LRLNHVGDWGTQFGMLITHLKAACPEALETGA----SVDIGDLVTFYKQAKQRFDADEDFKQRSREAV 221          
BLAST of mRNA_E-siliculosus-1a_F_contig11773.1145.1 vs. uniprot
Match: A0A6N2EZK6_9CYAN (Arginine--tRNA ligase n=1 Tax=Cyanobium sp. PLM2.Bin73 TaxID=2480217 RepID=A0A6N2EZK6_9CYAN)

HSP 1 Score: 91.7 bits (226), Expect = 5.800e-20
Identity = 45/68 (66.18%), Postives = 57/68 (83.82%), Query Frame = 0
Query:    5 VRLNHVGDWGTQFGMLISHLKEVAPEAIEDGAEDKASFNVGDLVTFYKEAKARFDEDDGFKEIARSEV 72
            +RLNHVGDWGTQFGMLI+HLK+VAPEA+ D A+   + ++GDLV FY++AKARFDEDD F+  +R EV
Sbjct:  169 LRLNHVGDWGTQFGMLITHLKQVAPEAL-DTAD---AVDLGDLVAFYRQAKARFDEDDAFQATSREEV 232          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig11773.1145.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K6W2_9PHAE3.190e-3697.06Arginyl-tRNA synthetase n=1 Tax=Ectocarpus sp. CCA... [more]
D8LIS7_ECTSI8.630e-3495.59Arginine--tRNA ligase n=1 Tax=Ectocarpus siliculos... [more]
A0A2T2W9J6_9CYAN2.530e-2166.18Arginine--tRNA ligase n=3 Tax=Cyanobacteria TaxID=... [more]
A0A5J4YTX5_PORPP9.070e-2167.65Arginine--tRNA ligase n=1 Tax=Porphyridium purpure... [more]
A0A0G4H8A5_VITBC1.680e-2064.71Arginine--tRNA ligase n=2 Tax=Vitrella brassicafor... [more]
A0A7S2Y2C9_9STRA1.700e-2067.65Arginine--tRNA ligase n=1 Tax=Fibrocapsa japonica ... [more]
A0A7S1TGS8_9RHOD3.870e-2069.12Arginine--tRNA ligase n=1 Tax=Compsopogon caeruleu... [more]
A0A7T1MFR8_9SYNE4.240e-2064.71Arginine--tRNA ligase n=1 Tax=Synechococcus sp. CB... [more]
A0A2P8WDG4_9CYAN5.770e-2064.71Arginine--tRNA ligase n=1 Tax=filamentous cyanobac... [more]
A0A6N2EZK6_9CYAN5.800e-2066.18Arginine--tRNA ligase n=1 Tax=Cyanobium sp. PLM2.B... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014729Rossmann-like alpha/beta/alpha sandwich foldGENE3D3.40.50.620coord: 1..72
e-value: 1.3E-9
score: 39.6
IPR035684Arginyl-tRNA synthetase, catalytic core domainPFAMPF00750tRNA-synt_1dcoord: 5..70
e-value: 1.8E-17
score: 63.4
NoneNo IPR availablePANTHERPTHR11956:SF6coord: 5..71
NoneNo IPR availableSUPERFAMILY52374Nucleotidylyl transferasecoord: 6..69
IPR001278Arginine-tRNA ligasePANTHERPTHR11956ARGINYL-TRNA SYNTHETASEcoord: 5..71

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig11773contigE-siliculosus-1a_F_contig11773:953..1562 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig11773.1145.1mRNA_E-siliculosus-1a_F_contig11773.1145.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig11773 953..1562 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig11773.1145.1 ID=prot_E-siliculosus-1a_F_contig11773.1145.1|Name=mRNA_E-siliculosus-1a_F_contig11773.1145.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=72bp
GSGQVRLNHVGDWGTQFGMLISHLKEVAPEAIEDGAEDKASFNVGDLVTF
YKEAKARFDEDDGFKEIARSEV
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001278Arg-tRNA-ligase
IPR035684ArgRS_core
IPR014729Rossmann-like_a/b/a_fold