mRNA_E-siliculosus-1a_F_contig11773.1145.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig11773.1145.1 vs. uniprot
Match: A0A6H5K6W2_9PHAE (Arginyl-tRNA synthetase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6W2_9PHAE) HSP 1 Score: 136 bits (343), Expect = 3.190e-36 Identity = 66/68 (97.06%), Postives = 67/68 (98.53%), Query Frame = 1
Query: 13 VRLNHVGDWGTQFGMLISHLKEVAPEAIEDGAEDKASFNVGDLVTFYKEAKARFDEDDGFKEIARSEV 216
VRLNHVGDWGTQFGMLISHLKEVAPEAIEDGAEDKASFNVGDLVTFYKEAKARFDEDDGFKE AR+EV
Sbjct: 284 VRLNHVGDWGTQFGMLISHLKEVAPEAIEDGAEDKASFNVGDLVTFYKEAKARFDEDDGFKETARAEV 351
BLAST of mRNA_E-siliculosus-1a_F_contig11773.1145.1 vs. uniprot
Match: D8LIS7_ECTSI (Arginine--tRNA ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIS7_ECTSI) HSP 1 Score: 130 bits (327), Expect = 8.630e-34 Identity = 65/68 (95.59%), Postives = 66/68 (97.06%), Query Frame = 1
Query: 13 VRLNHVGDWGTQFGMLISHLKEVAPEAIEDGAEDKASFNVGDLVTFYKEAKARFDEDDGFKEIARSEV 216
VRLNHVGDWGTQFGMLISHLKEVAPEAIEDGAEDK FNVGDLVTFYKEAKARFDEDDGFKEIAR+EV
Sbjct: 184 VRLNHVGDWGTQFGMLISHLKEVAPEAIEDGAEDK--FNVGDLVTFYKEAKARFDEDDGFKEIARAEV 249
BLAST of mRNA_E-siliculosus-1a_F_contig11773.1145.1 vs. uniprot
Match: A0A2T2W9J6_9CYAN (Arginine--tRNA ligase n=3 Tax=Cyanobacteria TaxID=1117 RepID=A0A2T2W9J6_9CYAN) HSP 1 Score: 95.5 bits (236), Expect = 2.530e-21 Identity = 45/68 (66.18%), Postives = 55/68 (80.88%), Query Frame = 1
Query: 13 VRLNHVGDWGTQFGMLISHLKEVAPEAIEDGAEDKASFNVGDLVTFYKEAKARFDEDDGFKEIARSEV 216
+R+NHVGDWGTQFGMLI+HLKEV PEA+E G+ S ++GDLV FYK+AK RFD+DDGFK +R V
Sbjct: 158 LRINHVGDWGTQFGMLITHLKEVCPEALEAGS----SVDIGDLVAFYKQAKKRFDDDDGFKTRSREAV 221
BLAST of mRNA_E-siliculosus-1a_F_contig11773.1145.1 vs. uniprot
Match: A0A5J4YTX5_PORPP (Arginine--tRNA ligase n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YTX5_PORPP) HSP 1 Score: 94.0 bits (232), Expect = 9.070e-21 Identity = 46/68 (67.65%), Postives = 56/68 (82.35%), Query Frame = 1
Query: 13 VRLNHVGDWGTQFGMLISHLKEVAPEAIEDGAEDKASFNVGDLVTFYKEAKARFDEDDGFKEIARSEV 216
+RLNHVGDWGTQFGMLI +L+EVAPEA+ DG++ ++GDLV FYK+AKARFDED F+E AR EV
Sbjct: 243 LRLNHVGDWGTQFGMLILYLREVAPEALVDGSD----LDLGDLVVFYKKAKARFDEDPEFQESARKEV 306
BLAST of mRNA_E-siliculosus-1a_F_contig11773.1145.1 vs. uniprot
Match: A0A0G4H8A5_VITBC (Arginine--tRNA ligase n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4H8A5_VITBC) HSP 1 Score: 93.2 bits (230), Expect = 1.680e-20 Identity = 44/68 (64.71%), Postives = 52/68 (76.47%), Query Frame = 1
Query: 13 VRLNHVGDWGTQFGMLISHLKEVAPEAIEDGAEDKASFNVGDLVTFYKEAKARFDEDDGFKEIARSEV 216
VRLNHVGDWGTQFGMLIS LK+V P+ IE +S + DLV FYKEAK RFDED+ F+E +R+EV
Sbjct: 181 VRLNHVGDWGTQFGMLISQLKDVQPDVIEQEGASASSVAISDLVAFYKEAKKRFDEDEAFQERSRNEV 248
BLAST of mRNA_E-siliculosus-1a_F_contig11773.1145.1 vs. uniprot
Match: A0A7S2Y2C9_9STRA (Arginine--tRNA ligase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y2C9_9STRA) HSP 1 Score: 93.2 bits (230), Expect = 1.700e-20 Identity = 46/68 (67.65%), Postives = 55/68 (80.88%), Query Frame = 1
Query: 13 VRLNHVGDWGTQFGMLISHLKEVAPEAIEDGAEDKASFNVGDLVTFYKEAKARFDEDDGFKEIARSEV 216
VRLNHVGDWGTQFGMLI++LKEV PEA+ + S +GDLV FYK+AKARFDEDD FK ++R+EV
Sbjct: 345 VRLNHVGDWGTQFGMLIAYLKEVKPEALTN----PKSAAIGDLVQFYKQAKARFDEDDKFKTVSRAEV 408
BLAST of mRNA_E-siliculosus-1a_F_contig11773.1145.1 vs. uniprot
Match: A0A7S1TGS8_9RHOD (Arginine--tRNA ligase n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TGS8_9RHOD) HSP 1 Score: 92.0 bits (227), Expect = 3.870e-20 Identity = 47/68 (69.12%), Postives = 54/68 (79.41%), Query Frame = 1
Query: 13 VRLNHVGDWGTQFGMLISHLKEVAPEAIEDGAEDKASFNVGDLVTFYKEAKARFDEDDGFKEIARSEV 216
+RLNHVGDWGTQFGMLI +LKE APEA AE KA ++GDLV FYK+AKARFD+D F+E AR EV
Sbjct: 80 LRLNHVGDWGTQFGMLILYLKEYAPEA----AEGKAVLDLGDLVAFYKKAKARFDDDSEFQENARKEV 143
BLAST of mRNA_E-siliculosus-1a_F_contig11773.1145.1 vs. uniprot
Match: A0A7T1MFR8_9SYNE (Arginine--tRNA ligase n=1 Tax=Synechococcus sp. CBW1004 TaxID=1353136 RepID=A0A7T1MFR8_9SYNE) HSP 1 Score: 92.0 bits (227), Expect = 4.240e-20 Identity = 44/68 (64.71%), Postives = 55/68 (80.88%), Query Frame = 1
Query: 13 VRLNHVGDWGTQFGMLISHLKEVAPEAIEDGAEDKASFNVGDLVTFYKEAKARFDEDDGFKEIARSEV 216
+RLNHVGDWGTQFGMLI+HLK+VAPEA+E + ++GDLV FY++AKARFDED+ F+ AR EV
Sbjct: 164 LRLNHVGDWGTQFGMLITHLKQVAPEALEH----PDAVDLGDLVAFYRQAKARFDEDEAFQTTAREEV 227
BLAST of mRNA_E-siliculosus-1a_F_contig11773.1145.1 vs. uniprot
Match: A0A2P8WDG4_9CYAN (Arginine--tRNA ligase n=1 Tax=filamentous cyanobacterium CCP5 TaxID=2107701 RepID=A0A2P8WDG4_9CYAN) HSP 1 Score: 91.7 bits (226), Expect = 5.770e-20 Identity = 44/68 (64.71%), Postives = 53/68 (77.94%), Query Frame = 1
Query: 13 VRLNHVGDWGTQFGMLISHLKEVAPEAIEDGAEDKASFNVGDLVTFYKEAKARFDEDDGFKEIARSEV 216
+RLNHVGDWGTQFGMLI+HLK PEA+E GA S ++GDLVTFYK+AK RFD D+ FK+ +R V
Sbjct: 158 LRLNHVGDWGTQFGMLITHLKAACPEALETGA----SVDIGDLVTFYKQAKQRFDADEDFKQRSREAV 221
BLAST of mRNA_E-siliculosus-1a_F_contig11773.1145.1 vs. uniprot
Match: A0A6N2EZK6_9CYAN (Arginine--tRNA ligase n=1 Tax=Cyanobium sp. PLM2.Bin73 TaxID=2480217 RepID=A0A6N2EZK6_9CYAN) HSP 1 Score: 91.7 bits (226), Expect = 5.800e-20 Identity = 45/68 (66.18%), Postives = 57/68 (83.82%), Query Frame = 1
Query: 13 VRLNHVGDWGTQFGMLISHLKEVAPEAIEDGAEDKASFNVGDLVTFYKEAKARFDEDDGFKEIARSEV 216
+RLNHVGDWGTQFGMLI+HLK+VAPEA+ D A+ + ++GDLV FY++AKARFDEDD F+ +R EV
Sbjct: 169 LRLNHVGDWGTQFGMLITHLKQVAPEAL-DTAD---AVDLGDLVAFYRQAKARFDEDDAFQATSREEV 232 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig11773.1145.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig11773.1145.1 >prot_E-siliculosus-1a_F_contig11773.1145.1 ID=prot_E-siliculosus-1a_F_contig11773.1145.1|Name=mRNA_E-siliculosus-1a_F_contig11773.1145.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=72bp GSGQVRLNHVGDWGTQFGMLISHLKEVAPEAIEDGAEDKASFNVGDLVTFback to top mRNA from alignment at E-siliculosus-1a_F_contig11773:953..1562+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig11773.1145.1 ID=mRNA_E-siliculosus-1a_F_contig11773.1145.1|Name=mRNA_E-siliculosus-1a_F_contig11773.1145.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=610bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11773:953..1562+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig11773:953..1562+ >mRNA_E-siliculosus-1a_F_contig11773.1145.1 ID=mRNA_E-siliculosus-1a_F_contig11773.1145.1|Name=mRNA_E-siliculosus-1a_F_contig11773.1145.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=432bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11773:953..1562+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |