mRNA_E-siliculosus-1a_F_contig11773.1145.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig11773.1145.1
Unique NamemRNA_E-siliculosus-1a_F_contig11773.1145.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig11773.1145.1 vs. uniprot
Match: A0A6H5K6W2_9PHAE (Arginyl-tRNA synthetase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6W2_9PHAE)

HSP 1 Score: 136 bits (343), Expect = 3.190e-36
Identity = 66/68 (97.06%), Postives = 67/68 (98.53%), Query Frame = 1
Query:   13 VRLNHVGDWGTQFGMLISHLKEVAPEAIEDGAEDKASFNVGDLVTFYKEAKARFDEDDGFKEIARSEV 216
            VRLNHVGDWGTQFGMLISHLKEVAPEAIEDGAEDKASFNVGDLVTFYKEAKARFDEDDGFKE AR+EV
Sbjct:  284 VRLNHVGDWGTQFGMLISHLKEVAPEAIEDGAEDKASFNVGDLVTFYKEAKARFDEDDGFKETARAEV 351          
BLAST of mRNA_E-siliculosus-1a_F_contig11773.1145.1 vs. uniprot
Match: D8LIS7_ECTSI (Arginine--tRNA ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIS7_ECTSI)

HSP 1 Score: 130 bits (327), Expect = 8.630e-34
Identity = 65/68 (95.59%), Postives = 66/68 (97.06%), Query Frame = 1
Query:   13 VRLNHVGDWGTQFGMLISHLKEVAPEAIEDGAEDKASFNVGDLVTFYKEAKARFDEDDGFKEIARSEV 216
            VRLNHVGDWGTQFGMLISHLKEVAPEAIEDGAEDK  FNVGDLVTFYKEAKARFDEDDGFKEIAR+EV
Sbjct:  184 VRLNHVGDWGTQFGMLISHLKEVAPEAIEDGAEDK--FNVGDLVTFYKEAKARFDEDDGFKEIARAEV 249          
BLAST of mRNA_E-siliculosus-1a_F_contig11773.1145.1 vs. uniprot
Match: A0A2T2W9J6_9CYAN (Arginine--tRNA ligase n=3 Tax=Cyanobacteria TaxID=1117 RepID=A0A2T2W9J6_9CYAN)

HSP 1 Score: 95.5 bits (236), Expect = 2.530e-21
Identity = 45/68 (66.18%), Postives = 55/68 (80.88%), Query Frame = 1
Query:   13 VRLNHVGDWGTQFGMLISHLKEVAPEAIEDGAEDKASFNVGDLVTFYKEAKARFDEDDGFKEIARSEV 216
            +R+NHVGDWGTQFGMLI+HLKEV PEA+E G+    S ++GDLV FYK+AK RFD+DDGFK  +R  V
Sbjct:  158 LRINHVGDWGTQFGMLITHLKEVCPEALEAGS----SVDIGDLVAFYKQAKKRFDDDDGFKTRSREAV 221          
BLAST of mRNA_E-siliculosus-1a_F_contig11773.1145.1 vs. uniprot
Match: A0A5J4YTX5_PORPP (Arginine--tRNA ligase n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YTX5_PORPP)

HSP 1 Score: 94.0 bits (232), Expect = 9.070e-21
Identity = 46/68 (67.65%), Postives = 56/68 (82.35%), Query Frame = 1
Query:   13 VRLNHVGDWGTQFGMLISHLKEVAPEAIEDGAEDKASFNVGDLVTFYKEAKARFDEDDGFKEIARSEV 216
            +RLNHVGDWGTQFGMLI +L+EVAPEA+ DG++     ++GDLV FYK+AKARFDED  F+E AR EV
Sbjct:  243 LRLNHVGDWGTQFGMLILYLREVAPEALVDGSD----LDLGDLVVFYKKAKARFDEDPEFQESARKEV 306          
BLAST of mRNA_E-siliculosus-1a_F_contig11773.1145.1 vs. uniprot
Match: A0A0G4H8A5_VITBC (Arginine--tRNA ligase n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4H8A5_VITBC)

HSP 1 Score: 93.2 bits (230), Expect = 1.680e-20
Identity = 44/68 (64.71%), Postives = 52/68 (76.47%), Query Frame = 1
Query:   13 VRLNHVGDWGTQFGMLISHLKEVAPEAIEDGAEDKASFNVGDLVTFYKEAKARFDEDDGFKEIARSEV 216
            VRLNHVGDWGTQFGMLIS LK+V P+ IE      +S  + DLV FYKEAK RFDED+ F+E +R+EV
Sbjct:  181 VRLNHVGDWGTQFGMLISQLKDVQPDVIEQEGASASSVAISDLVAFYKEAKKRFDEDEAFQERSRNEV 248          
BLAST of mRNA_E-siliculosus-1a_F_contig11773.1145.1 vs. uniprot
Match: A0A7S2Y2C9_9STRA (Arginine--tRNA ligase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y2C9_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 1.700e-20
Identity = 46/68 (67.65%), Postives = 55/68 (80.88%), Query Frame = 1
Query:   13 VRLNHVGDWGTQFGMLISHLKEVAPEAIEDGAEDKASFNVGDLVTFYKEAKARFDEDDGFKEIARSEV 216
            VRLNHVGDWGTQFGMLI++LKEV PEA+ +      S  +GDLV FYK+AKARFDEDD FK ++R+EV
Sbjct:  345 VRLNHVGDWGTQFGMLIAYLKEVKPEALTN----PKSAAIGDLVQFYKQAKARFDEDDKFKTVSRAEV 408          
BLAST of mRNA_E-siliculosus-1a_F_contig11773.1145.1 vs. uniprot
Match: A0A7S1TGS8_9RHOD (Arginine--tRNA ligase n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TGS8_9RHOD)

HSP 1 Score: 92.0 bits (227), Expect = 3.870e-20
Identity = 47/68 (69.12%), Postives = 54/68 (79.41%), Query Frame = 1
Query:   13 VRLNHVGDWGTQFGMLISHLKEVAPEAIEDGAEDKASFNVGDLVTFYKEAKARFDEDDGFKEIARSEV 216
            +RLNHVGDWGTQFGMLI +LKE APEA    AE KA  ++GDLV FYK+AKARFD+D  F+E AR EV
Sbjct:   80 LRLNHVGDWGTQFGMLILYLKEYAPEA----AEGKAVLDLGDLVAFYKKAKARFDDDSEFQENARKEV 143          
BLAST of mRNA_E-siliculosus-1a_F_contig11773.1145.1 vs. uniprot
Match: A0A7T1MFR8_9SYNE (Arginine--tRNA ligase n=1 Tax=Synechococcus sp. CBW1004 TaxID=1353136 RepID=A0A7T1MFR8_9SYNE)

HSP 1 Score: 92.0 bits (227), Expect = 4.240e-20
Identity = 44/68 (64.71%), Postives = 55/68 (80.88%), Query Frame = 1
Query:   13 VRLNHVGDWGTQFGMLISHLKEVAPEAIEDGAEDKASFNVGDLVTFYKEAKARFDEDDGFKEIARSEV 216
            +RLNHVGDWGTQFGMLI+HLK+VAPEA+E       + ++GDLV FY++AKARFDED+ F+  AR EV
Sbjct:  164 LRLNHVGDWGTQFGMLITHLKQVAPEALEH----PDAVDLGDLVAFYRQAKARFDEDEAFQTTAREEV 227          
BLAST of mRNA_E-siliculosus-1a_F_contig11773.1145.1 vs. uniprot
Match: A0A2P8WDG4_9CYAN (Arginine--tRNA ligase n=1 Tax=filamentous cyanobacterium CCP5 TaxID=2107701 RepID=A0A2P8WDG4_9CYAN)

HSP 1 Score: 91.7 bits (226), Expect = 5.770e-20
Identity = 44/68 (64.71%), Postives = 53/68 (77.94%), Query Frame = 1
Query:   13 VRLNHVGDWGTQFGMLISHLKEVAPEAIEDGAEDKASFNVGDLVTFYKEAKARFDEDDGFKEIARSEV 216
            +RLNHVGDWGTQFGMLI+HLK   PEA+E GA    S ++GDLVTFYK+AK RFD D+ FK+ +R  V
Sbjct:  158 LRLNHVGDWGTQFGMLITHLKAACPEALETGA----SVDIGDLVTFYKQAKQRFDADEDFKQRSREAV 221          
BLAST of mRNA_E-siliculosus-1a_F_contig11773.1145.1 vs. uniprot
Match: A0A6N2EZK6_9CYAN (Arginine--tRNA ligase n=1 Tax=Cyanobium sp. PLM2.Bin73 TaxID=2480217 RepID=A0A6N2EZK6_9CYAN)

HSP 1 Score: 91.7 bits (226), Expect = 5.800e-20
Identity = 45/68 (66.18%), Postives = 57/68 (83.82%), Query Frame = 1
Query:   13 VRLNHVGDWGTQFGMLISHLKEVAPEAIEDGAEDKASFNVGDLVTFYKEAKARFDEDDGFKEIARSEV 216
            +RLNHVGDWGTQFGMLI+HLK+VAPEA+ D A+   + ++GDLV FY++AKARFDEDD F+  +R EV
Sbjct:  169 LRLNHVGDWGTQFGMLITHLKQVAPEAL-DTAD---AVDLGDLVAFYRQAKARFDEDDAFQATSREEV 232          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig11773.1145.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K6W2_9PHAE3.190e-3697.06Arginyl-tRNA synthetase n=1 Tax=Ectocarpus sp. CCA... [more]
D8LIS7_ECTSI8.630e-3495.59Arginine--tRNA ligase n=1 Tax=Ectocarpus siliculos... [more]
A0A2T2W9J6_9CYAN2.530e-2166.18Arginine--tRNA ligase n=3 Tax=Cyanobacteria TaxID=... [more]
A0A5J4YTX5_PORPP9.070e-2167.65Arginine--tRNA ligase n=1 Tax=Porphyridium purpure... [more]
A0A0G4H8A5_VITBC1.680e-2064.71Arginine--tRNA ligase n=2 Tax=Vitrella brassicafor... [more]
A0A7S2Y2C9_9STRA1.700e-2067.65Arginine--tRNA ligase n=1 Tax=Fibrocapsa japonica ... [more]
A0A7S1TGS8_9RHOD3.870e-2069.12Arginine--tRNA ligase n=1 Tax=Compsopogon caeruleu... [more]
A0A7T1MFR8_9SYNE4.240e-2064.71Arginine--tRNA ligase n=1 Tax=Synechococcus sp. CB... [more]
A0A2P8WDG4_9CYAN5.770e-2064.71Arginine--tRNA ligase n=1 Tax=filamentous cyanobac... [more]
A0A6N2EZK6_9CYAN5.800e-2066.18Arginine--tRNA ligase n=1 Tax=Cyanobium sp. PLM2.B... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig11773contigE-siliculosus-1a_F_contig11773:953..1562 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size216
Model size216
Exons2
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029
Best eggNOG OGNA|NA|NA
Best tax levelOscillatoriales
BiGG ReactioniECABU_c1320.ECABU_c21380,iECNA114_1301.ECNA114_1940,iECSE_1348.ECSE_2111,iECSF_1327.ECSF_1736,iEcolC_1368.EcolC_1756,iJN746.PP_5089,iLF82_1304.LF82_0128,iNRG857_1313.NRG857_09405,iUMNK88_1353.UMNK88_2348,ic_1306.c2291
COG Functional cat.J
EC6.1.1.19
EggNOG OGs1G15V@1117,1H7AH@1150,COG0018@1,COG0018@2
EggNOG free text desc.Arginyl tRNA synthetase N terminal domain
GOsGO:0003674,GO:0003824,GO:0004812,GO:0004814,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006420,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576
KEGG ModuleM00359,M00360
KEGG Pathwayko00970,map00970
KEGG ReactionR03646
KEGG koko:K01887
KEGG rclassRC00055,RC00523
Preferred nameargS
Seed eggNOG ortholog1229172.JQFA01000004_gene492
Seed ortholog evalue1.2e-16
Seed ortholog score92.0
Taxonomic scopeBacteria
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927697.2908924-CDS-E-siliculosus-1a_F_contig11773:952..10751622927697.2908924-CDS-E-siliculosus-1a_F_contig11773:952..1075Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11773 953..1075 +
1696318642.377744-CDS-E-siliculosus-1a_F_contig11773:952..10751696318642.377744-CDS-E-siliculosus-1a_F_contig11773:952..1075Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11773 953..1075 +
1622927697.307809-CDS-E-siliculosus-1a_F_contig11773:1469..15621622927697.307809-CDS-E-siliculosus-1a_F_contig11773:1469..1562Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11773 1470..1562 +
1696318642.3908136-CDS-E-siliculosus-1a_F_contig11773:1469..15621696318642.3908136-CDS-E-siliculosus-1a_F_contig11773:1469..1562Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11773 1470..1562 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig11773.1145.1prot_E-siliculosus-1a_F_contig11773.1145.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig11773 953..1562 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig11773.1145.1

>prot_E-siliculosus-1a_F_contig11773.1145.1 ID=prot_E-siliculosus-1a_F_contig11773.1145.1|Name=mRNA_E-siliculosus-1a_F_contig11773.1145.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=72bp
GSGQVRLNHVGDWGTQFGMLISHLKEVAPEAIEDGAEDKASFNVGDLVTF
YKEAKARFDEDDGFKEIARSEV
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mRNA from alignment at E-siliculosus-1a_F_contig11773:953..1562+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig11773.1145.1 ID=mRNA_E-siliculosus-1a_F_contig11773.1145.1|Name=mRNA_E-siliculosus-1a_F_contig11773.1145.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=610bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11773:953..1562+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGTTCTGGTCAGGTGCGGCTTAACCACGTCGGAGACTGGGGGACACAGTT CGGGATGCTCATCTCCCACCTCAAAGAGGTCGCACCAGAGGCTATCGAGG ATGGGGCGGAGGACAAGGCAAGTGTTTCATCAGAAGAAAGGCAGCCTCTC CGATGTGATATTCGATTGGGATTTTGAGGAGTCGTGGGCGTTGATGCTGC GAAGCGGTGTGTCATCGTTGTTTGTTGTGTTGTTGTGGTTGTTGTTGTTG CTGCTGCTGCTGTTGTCGTTGTTGCTTCTGTTTGGGGTGGGAGTGTGTCT TGGGGGTGTTGGTTGTTGCAGTTGGTAGTAATCTTGTTTTTTTTTCGTGG AACTTCCCTGCTTACACCTTAGCTCTCCCGCGAACGTTCTACTCGAGCGC GATCCGTTGATGGTCTATGCGAAAAACCGACAGCCTCCCAAAAATACGTC ACTCCCTGCCTCCATTATTCGTAACCATAACGGACTCCCAACCATGTGTT CTTTTTTTTTGTCGCAGTTCAACGTGGGAGACTTGGTGACGTTCTACAAG GAAGCCAAGGCTCGCTTCGACGAAGATGACGGGTTTAAGGAGATCGCCCG CTCGGAGGTG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig11773:953..1562+

>mRNA_E-siliculosus-1a_F_contig11773.1145.1 ID=mRNA_E-siliculosus-1a_F_contig11773.1145.1|Name=mRNA_E-siliculosus-1a_F_contig11773.1145.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=432bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11773:953..1562+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGTTCTGGTCAGGTGCGGCTTAACCACGTCGGAGACTGGGGGACACAGTT
CGGGATGCTCATCTCCCACCTCAAAGAGGTCGCACCAGAGGCTATCGAGG
ATGGGGCGGAGGACAAGGCAAGTGGTTCTGGTCAGGTGCGGCTTAACCAC
GTCGGAGACTGGGGGACACAGTTCGGGATGCTCATCTCCCACCTCAAAGA
GGTCGCACCAGAGGCTATCGAGGATGGGGCGGAGGACAAGGCAAGTTTCA
ACGTGGGAGACTTGGTGACGTTCTACAAGGAAGCCAAGGCTCGCTTCGAC
GAAGATGACGGGTTTAAGGAGATCGCCCGCTCGGAGGTGTTCAACGTGGG
AGACTTGGTGACGTTCTACAAGGAAGCCAAGGCTCGCTTCGACGAAGATG
ACGGGTTTAAGGAGATCGCCCGCTCGGAGGTG
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