prot_E-siliculosus-1a_F_contig1167.1086.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig1167.1086.1
Unique Nameprot_E-siliculosus-1a_F_contig1167.1086.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length295
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1167.1086.1 vs. uniprot
Match: D7G207_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G207_ECTSI)

HSP 1 Score: 391 bits (1005), Expect = 1.990e-135
Identity = 219/230 (95.22%), Postives = 220/230 (95.65%), Query Frame = 0 
Query:   68 GRAGSPGNSELSGEGEEVKTTAGCWEGDCVICLCPLRSSSQQPXXXXXXXEVYQIQACGHKFHRACLAENRRAGNIGCPCCRGPLERGLTPTPTAAERRATADRQALSEARGATLDSALVAMVAVREALTVISNAGPAPAVVAAAEPATLAARSTQEAVSTVLAVVRSTAPSVTMYAAASEGRA--VPDHHLRCLDAESEHAFMGSLSRPVFQLHLRGILRIALQPSSSR 295
            GRAGSPGNSE SGEGEEVKTTAGCWEGDCVICLCPLRSSSQQPXXXXXXXEVYQIQACGHKFHRACLAENRRAGNIGCPCCRGPLERGLTPTPTAAERRATADRQALSEARGATLDSALVAMVAVREALTVISNAGPAPAVVAAAEPATLAARSTQEAVSTVLAVVRSTAPSVTMYAAAS GR      +HLRCLDAESE AFMGSLSRPVFQ HLRGILRIALQPSSSR
Sbjct:    5 GRAGSPGNSEQSGEGEEVKTTAGCWEGDCVICLCPLRSSSQQPXXXXXXXEVYQIQACGHKFHRACLAENRRAGNIGCPCCRGPLERGLTPTPTAAERRATADRQALSEARGATLDSALVAMVAVREALTVISNAGPAPAVVAAAEPATLAARSTQEAVSTVLAVVRSTAPSVTMYAAASRGRPSRYQINHLRCLDAESERAFMGSLSRPVFQSHLRGILRIALQPSSSR 234
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BLAST of mRNA_E-siliculosus-1a_F_contig1167.1086.1 vs. uniprot
Match: A0A6H5L4L7_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4L7_9PHAE)

HSP 1 Score: 333 bits (854), Expect = 6.130e-110
Identity = 188/194 (96.91%), Postives = 188/194 (96.91%), Query Frame = 0 
Query:   54 APTILSPIPRTPTPGRAGSPGNSELSGEGEEVKTTAGCWEGDCVICLCPLRSSSQQPXXXXXXXEVYQIQACGHKFHRACLAENRRAGNIGCPCCRGPLERGLTPTPTAAERRATADRQALSEARGATLDSALVAMVAVREALTVISNAGPAPAVVAAAEPATLAARSTQEAVSTVLAVVRSTAPSVTMYAAAS 247
            APTILSPIPRTPTPGRAGSPGN E SGEGEEVKTT G  EGDCVICLCPLRSSSQQPXXXXXXXEVYQIQACGHKFHRACLAENRRAGNIGCPCCRGPLERGLTPTPTAAERRATADRQALSEARGATLDSALVAMVAVREALTVISNAGPA AVVAAAEPATLAARSTQEAVSTVLAVVRSTAPSVTMYAAAS
Sbjct:  166 APTILSPIPRTPTPGRAGSPGNCEQSGEGEEVKTTVGRLEGDCVICLCPLRSSSQQPXXXXXXXEVYQIQACGHKFHRACLAENRRAGNIGCPCCRGPLERGLTPTPTAAERRATADRQALSEARGATLDSALVAMVAVREALTVISNAGPAQAVVAAAEPATLAARSTQEAVSTVLAVVRSTAPSVTMYAAAS 359
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BLAST of mRNA_E-siliculosus-1a_F_contig1167.1086.1 vs. uniprot
Match: A0A6H5JHS7_9PHAE (RING-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JHS7_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 8.520e-22
Identity = 50/88 (56.82%), Postives = 54/88 (61.36%), Query Frame = 0 
Query:   80 GEGEEVKTTAGCWEGDCVICLCPLRSSSQQPXXXXXXXEVYQIQACGHKFHRACLAENRRAGNIGCPCCRGPLERGLTPTPTAAERRA 167
            GEG    TT  C  G C ICL PL+  S          EVY ++ C H FHR CL ENRRAGN GCP CRG LERGLTP  TAAER+A
Sbjct:   86 GEGRAELTTPACRGGSCAICLSPLKKPS------GAKKEVYTVRVCQHMFHRVCLVENRRAGNTGCPYCRGDLERGLTPEATAAERKA 167
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1167.1086.1 vs. uniprot
Match: D7FR64_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR64_ECTSI)

HSP 1 Score: 79.3 bits (194), Expect = 4.560e-13
Identity = 36/67 (53.73%), Postives = 40/67 (59.70%), Query Frame = 0 
Query:   95 DCVICLCPLRSSSQQPXXXXXXXEVYQIQACGHKFHRACLAENRRAGNIGCPCCRGPLERGLTPTPT 161
            DC ICL PLR    +P        VY I+AC H FHR CL  NR  G   CPCCRG +ERGL+P PT
Sbjct:   81 DCAICLSPLR----RPGGSVPERPVYTIRACEHNFHRDCLVANRAEGRTTCPCCRGEIERGLSPAPT 143
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1167.1086.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G207_ECTSI1.990e-13595.22RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5L4L7_9PHAE6.130e-11096.91RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JHS7_9PHAE8.520e-2256.82RING-type domain-containing protein n=2 Tax=Ectoca... [more]
D7FR64_ECTSI4.560e-1353.73RING-type domain-containing protein n=1 Tax=Ectoca... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 96..148
e-value: 2.6E-4
score: 30.3
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 96..149
score: 10.719
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 79..150
e-value: 3.6E-11
score: 44.6
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 91..154

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1167contigE-siliculosus-1a_F_contig1167:20378..22886 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1167.1086.1mRNA_E-siliculosus-1a_F_contig1167.1086.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig1167 20378..22886 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig1167.1086.1 ID=prot_E-siliculosus-1a_F_contig1167.1086.1|Name=mRNA_E-siliculosus-1a_F_contig1167.1086.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=295bp
AARAPSALQSTATPRPRSRASAAAAGVARSAADAATAVAADAAAATTTPP
SAAAPTILSPIPRTPTPGRAGSPGNSELSGEGEEVKTTAGCWEGDCVICL
CPLRSSSQQPQEEQQQQEVYQIQACGHKFHRACLAENRRAGNIGCPCCRG
PLERGLTPTPTAAERRATADRQALSEARGATLDSALVAMVAVREALTVIS
NAGPAPAVVAAAEPATLAARSTQEAVSTVLAVVRSTAPSVTMYAAASEGR
AVPDHHLRCLDAESEHAFMGSLSRPVFQLHLRGILRIALQPSSSR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING