mRNA_E-siliculosus-1a_F_contig1167.1086.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1167.1086.1
Unique NamemRNA_E-siliculosus-1a_F_contig1167.1086.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1167.1086.1 vs. uniprot
Match: D7G207_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G207_ECTSI)

HSP 1 Score: 391 bits (1005), Expect = 1.990e-135
Identity = 219/230 (95.22%), Postives = 220/230 (95.65%), Query Frame = 1 
Query:  202 GRAGSPGNSELSGEGEEVKTTAGCWEGDCVICLCPLRSSSQQPXXXXXXXEVYQIQACGHKFHRACLAENRRAGNIGCPCCRGPLERGLTPTPTAAERRATADRQALSEARGATLDSALVAMVAVREALTVISNAGPAPAVVAAAEPATLAARSTQEAVSTVLAVVRSTAPSVTMYAAASEGRA--VPDHHLRCLDAESEHAFMGSLSRPVFQLHLRGILRIALQPSSSR 885
            GRAGSPGNSE SGEGEEVKTTAGCWEGDCVICLCPLRSSSQQPXXXXXXXEVYQIQACGHKFHRACLAENRRAGNIGCPCCRGPLERGLTPTPTAAERRATADRQALSEARGATLDSALVAMVAVREALTVISNAGPAPAVVAAAEPATLAARSTQEAVSTVLAVVRSTAPSVTMYAAAS GR      +HLRCLDAESE AFMGSLSRPVFQ HLRGILRIALQPSSSR
Sbjct:    5 GRAGSPGNSEQSGEGEEVKTTAGCWEGDCVICLCPLRSSSQQPXXXXXXXEVYQIQACGHKFHRACLAENRRAGNIGCPCCRGPLERGLTPTPTAAERRATADRQALSEARGATLDSALVAMVAVREALTVISNAGPAPAVVAAAEPATLAARSTQEAVSTVLAVVRSTAPSVTMYAAASRGRPSRYQINHLRCLDAESERAFMGSLSRPVFQSHLRGILRIALQPSSSR 234
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1167.1086.1 vs. uniprot
Match: A0A6H5L4L7_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4L7_9PHAE)

HSP 1 Score: 333 bits (854), Expect = 6.130e-110
Identity = 188/194 (96.91%), Postives = 188/194 (96.91%), Query Frame = 1 
Query:  160 APTILSPIPRTPTPGRAGSPGNSELSGEGEEVKTTAGCWEGDCVICLCPLRSSSQQPXXXXXXXEVYQIQACGHKFHRACLAENRRAGNIGCPCCRGPLERGLTPTPTAAERRATADRQALSEARGATLDSALVAMVAVREALTVISNAGPAPAVVAAAEPATLAARSTQEAVSTVLAVVRSTAPSVTMYAAAS 741
            APTILSPIPRTPTPGRAGSPGN E SGEGEEVKTT G  EGDCVICLCPLRSSSQQPXXXXXXXEVYQIQACGHKFHRACLAENRRAGNIGCPCCRGPLERGLTPTPTAAERRATADRQALSEARGATLDSALVAMVAVREALTVISNAGPA AVVAAAEPATLAARSTQEAVSTVLAVVRSTAPSVTMYAAAS
Sbjct:  166 APTILSPIPRTPTPGRAGSPGNCEQSGEGEEVKTTVGRLEGDCVICLCPLRSSSQQPXXXXXXXEVYQIQACGHKFHRACLAENRRAGNIGCPCCRGPLERGLTPTPTAAERRATADRQALSEARGATLDSALVAMVAVREALTVISNAGPAQAVVAAAEPATLAARSTQEAVSTVLAVVRSTAPSVTMYAAAS 359
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1167.1086.1 vs. uniprot
Match: A0A6H5JHS7_9PHAE (RING-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JHS7_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 8.520e-22
Identity = 50/88 (56.82%), Postives = 54/88 (61.36%), Query Frame = 1 
Query:  238 GEGEEVKTTAGCWEGDCVICLCPLRSSSQQPXXXXXXXEVYQIQACGHKFHRACLAENRRAGNIGCPCCRGPLERGLTPTPTAAERRA 501
            GEG    TT  C  G C ICL PL+  S          EVY ++ C H FHR CL ENRRAGN GCP CRG LERGLTP  TAAER+A
Sbjct:   86 GEGRAELTTPACRGGSCAICLSPLKKPS------GAKKEVYTVRVCQHMFHRVCLVENRRAGNTGCPYCRGDLERGLTPEATAAERKA 167
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1167.1086.1 vs. uniprot
Match: D7FR64_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR64_ECTSI)

HSP 1 Score: 79.3 bits (194), Expect = 4.560e-13
Identity = 36/67 (53.73%), Postives = 40/67 (59.70%), Query Frame = 1 
Query:  283 DCVICLCPLRSSSQQPXXXXXXXEVYQIQACGHKFHRACLAENRRAGNIGCPCCRGPLERGLTPTPT 483
            DC ICL PLR    +P        VY I+AC H FHR CL  NR  G   CPCCRG +ERGL+P PT
Sbjct:   81 DCAICLSPLR----RPGGSVPERPVYTIRACEHNFHRDCLVANRAEGRTTCPCCRGEIERGLSPAPT 143
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1167.1086.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G207_ECTSI1.990e-13595.22RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5L4L7_9PHAE6.130e-11096.91RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JHS7_9PHAE8.520e-2256.82RING-type domain-containing protein n=2 Tax=Ectoca... [more]
D7FR64_ECTSI4.560e-1353.73RING-type domain-containing protein n=1 Tax=Ectoca... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1167contigE-siliculosus-1a_F_contig1167:20378..22886 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size885
Model size885
Exons3
Ec32 orthologEc-07_003410.1
Ec32 ortholog descriptionZinc finger, RING-type
Hectar predicted targeting categorymitochondrion
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1167.1086.1prot_E-siliculosus-1a_F_contig1167.1086.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1167 20378..22886 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927685.4820104-CDS-E-siliculosus-1a_F_contig1167:20377..205211622927685.4820104-CDS-E-siliculosus-1a_F_contig1167:20377..20521Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1167 20378..20521 -
1696318638.0239902-CDS-E-siliculosus-1a_F_contig1167:20377..205211696318638.0239902-CDS-E-siliculosus-1a_F_contig1167:20377..20521Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1167 20378..20521 -
1622927685.498465-CDS-E-siliculosus-1a_F_contig1167:21291..216541622927685.498465-CDS-E-siliculosus-1a_F_contig1167:21291..21654Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1167 21292..21654 -
1696318638.0553534-CDS-E-siliculosus-1a_F_contig1167:21291..216541696318638.0553534-CDS-E-siliculosus-1a_F_contig1167:21291..21654Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1167 21292..21654 -
1622927685.5110176-CDS-E-siliculosus-1a_F_contig1167:22508..228861622927685.5110176-CDS-E-siliculosus-1a_F_contig1167:22508..22886Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1167 22509..22886 -
1696318638.0644915-CDS-E-siliculosus-1a_F_contig1167:22508..228861696318638.0644915-CDS-E-siliculosus-1a_F_contig1167:22508..22886Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1167 22509..22886 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1167.1086.1

>prot_E-siliculosus-1a_F_contig1167.1086.1 ID=prot_E-siliculosus-1a_F_contig1167.1086.1|Name=mRNA_E-siliculosus-1a_F_contig1167.1086.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=295bp
AARAPSALQSTATPRPRSRASAAAAGVARSAADAATAVAADAAAATTTPP
SAAAPTILSPIPRTPTPGRAGSPGNSELSGEGEEVKTTAGCWEGDCVICL
CPLRSSSQQPQEEQQQQEVYQIQACGHKFHRACLAENRRAGNIGCPCCRG
PLERGLTPTPTAAERRATADRQALSEARGATLDSALVAMVAVREALTVIS
NAGPAPAVVAAAEPATLAARSTQEAVSTVLAVVRSTAPSVTMYAAASEGR
AVPDHHLRCLDAESEHAFMGSLSRPVFQLHLRGILRIALQPSSSR
back to top

mRNA from alignment at E-siliculosus-1a_F_contig1167:20378..22886-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1167.1086.1 ID=mRNA_E-siliculosus-1a_F_contig1167.1086.1|Name=mRNA_E-siliculosus-1a_F_contig1167.1086.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2509bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1167:20378..22886- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GCAGCACGGGCCCCGTCCGCTCTCCAGTCGACCGCCACGCCGCGTCCTCG
GTCGAGGGCTTCCGCCGCCGCCGCCGGCGTTGCGAGAAGTGCCGCCGACG
CCGCCACGGCCGTTGCCGCCGACGCGGCTGCTGCTACGACTACTCCGCCC
TCAGCAGCAGCGCCGACGATTCTTTCCCCGATACCGCGAACACCGACGCC
AGGCAGAGCCGGGAGCCCCGGCAACAGCGAGCTGAGCGGCGAGGGAGAGG
AGGTCAAGACAACCGCGGGGTGCTGGGAGGGAGACTGCGTTATTTGTCTT
TGCCCGCTGAGGAGTTCTAGCCAGCAGCCGCAGGAGGAGCAGCAGCAGCA
GGAGGTGTACCAGATCCAAGCGTGTGGGGTGAGAAGCAGGCCGGGGTAAC
TACACCAAGGGTACATGTAATGTTGCAGTAGTTTACGTTTTGGCAAATCG
GTGGATACCGGTCGCACTTGTCGCAGATGATGCAGATTAGCAGCAGGCTG
GTATGCGCATGGCACTCTCTAGATATCATGTGTGCGTCATGCTGCTGCTG
TGCCACAGGTTGTCGGACATTTCTTGACGGTGCCACTACCCTTTTTTGGC
GAGGGAAGGAAGTATTTTTGATTGCTCCGCAGCGGTAGTTGCATGTGCTC
TGCTGCTCCTCACGTCAAGAGATGGCGGGTGAGCATTCTTTAATGTTGTC
GGCCTTGGTCCATTTAGAGCTGTGCTTTTGTGGTTGGCGAACTGTAGCAC
GTGCATCTCCGAAGTCTCAGCTTTCTTCGACGTTCTCTCAACATTACCTC
CACATGCTGCTTCGCCAGCAACAATATTCTTAGAGGGAGGCCTAGGTCGT
TGTCTGTCCCCGCAATTCTGTCACGATACAGCAGTCCCGTCGCGTTTGCT
TTCCTGATCGAATGACCTGTTGCGACGAGCACGTGCTGTGCAGAGAAGTC
ACCAAGTATCTGTGACAAACATGCAACCCACAACAACGCCACACGGACGT
GCTTTTCCTTCTCCACCACAGCGGTCTTCTTTATCGTTCCGTTGATGGAA
AACCAAGTACGTTTTTTGTTGCGCATTCGAACCCTACTACTCTCACGAGC
ACCGGCCGCACGCATCTGCGCATTCGAACCCTACACTCTCACGAGCACCG
GCCGCACGCATCTACGTACGCGCGTTGCTCACCCAACTTCTCTCCGCCCC
CATCTCCTGTCCTCCAACCTTCTGTGCCACAGCACAAGTTCCACCGAGCG
TGCCTCGCCGAGAACCGCAGGGCGGGGAACATCGGCTGCCCCTGCTGCCG
GGGCCCCCTAGAGAGGGGGCTGACGCCCACGCCCACCGCGGCGGAGAGGA
GAGCGACCGCAGACCGGCAGGCGCTCTCGGAAGCCCGGGGGGCCACCCTG
GACTCGGCGCTGGTTGCGATGGTGGCCGTGCGCGAGGCGCTGACGGTGAT
CTCGAACGCGGGCCCGGCCCCGGCGGTGGTGGCGGCGGCCGAGCCGGCGA
CGCTCGCGGCGAGGTCGACGCAGGAGGCCGTGTCGACGGTGCTGGCGGTG
GTGCGGTCGACCGCGCCGTCGGTGACCATGTACGCGGCGGCCTCGGTGAG
GCTGGAGGCCTCGCGGGTAGAGCTCGTGAGGACGGTGGCGGCCTTGACGG
CCGCGGTGGCCCAGGCGGTTGGAGGAGGCGGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCGAAAGCCCCGTGATGCTCTGACGACGACCCCC
TCACTTTTCGCAAGCCCGAATAAGAATCTGACACGTTTGCGAGGTTTTGT
GGTCACCCCCTCACTCTCGTAGGCCCAAAGTCTGGCACGCGTTGCGATGG
TGTGTGGAGGGCTCGTGCGGCGGCTCGTGCACGCATGCGTCTGTTTGTTG
AGAAAGATTGGTATGTCCTGCGGTGCGGCTTCGTGGTGGAGAAGCAGCAG
CGTCAAGAAGAAAGAAGTGATCCGCCCTACTCATCGTGTTTCGTTCCATG
CTGGAGTTTTCGTGGGTACGCACCGGCTGGTTGCTTCCAAGCAGGCACCG
AAAAGGTGGAGACTGGCGCCCTGAATAGATCTGGAAAATAATCACTCAAG
CGGTAGGAGGAGTCTTGAGGAAGGAGCGCGCGCGTGGTCAGACCTTTTCA
TTCAGTTTGCTCCCGACTGCTGGCGTGCGCACTGGGTGCGGCAATTTGCG
CCGGTTTGGCATGATAAGGACCAACGTGCTGCCAACGCCCGTGACTGTTC
AACCTTCTTCGGGTGGACCCCAAATTGGTGCCTCGGCTTAAGCCAAGGTC
CCGTGATGTGGTGGTTTAGTCTGCCACGGGCGGGGTCTCGTTTTCCTACC
CTGCGATGCAGCGAGGAAGGCCGAGCGGTACCAGATCACCACCTGAGGTG
TCTGGATGCGGAGAGCGAGCACGCGTTCATGGGCAGTCTTTCGCGTCCAG
TATTCCAGTTGCATCTTCGCGGCATACTTCGGATCGCACTGCAGCCATCC
TCGTCACGT
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1167:20378..22886-

>mRNA_E-siliculosus-1a_F_contig1167.1086.1 ID=mRNA_E-siliculosus-1a_F_contig1167.1086.1|Name=mRNA_E-siliculosus-1a_F_contig1167.1086.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1770bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1167:20378..22886- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GCAGCACGGGCCCCGTCCGCTCTCCAGTCGACCGCCACGCCGCGTCCTCG
GTCGAGGGCTTCCGCCGCCGCCGCCGGCGTTGCGAGAAGTGCCGCCGACG
CCGCCACGGCCGTTGCCGCCGACGCGGCTGCTGCTACGACTACTCCGCCC
TCAGCAGCAGCGCCGACGATTCTTTCCCCGATACCGCGAACACCGACGCC
AGGCAGAGCCGGGAGCCCCGGCAACAGCGAGCTGAGCGGCGAGGGAGAGG
AGGTCAAGACAACCGCGGGGTGCTGGGAGGGAGACTGCGTTATTTGTCTT
TGCCCGCTGAGGAGTTCTAGCCAGCAGCCGCAGGAGGAGCAGCAGCAGCA
GGAGGTGTACCAGATCCAAGCGTGTGGGGCAGCACGGGCCCCGTCCGCTC
TCCAGTCGACCGCCACGCCGCGTCCTCGGTCGAGGGCTTCCGCCGCCGCC
GCCGGCGTTGCGAGAAGTGCCGCCGACGCCGCCACGGCCGTTGCCGCCGA
CGCGGCTGCTGCTACGACTACTCCGCCCTCAGCAGCAGCGCCGACGATTC
TTTCCCCGATACCGCGAACACCGACGCCAGGCAGAGCCGGGAGCCCCGGC
AACAGCGAGCTGAGCGGCGAGGGAGAGGAGGTCAAGACAACCGCGGGGTG
CTGGGAGGGAGACTGCGTTATTTGTCTTTGCCCGCTGAGGAGTTCTAGCC
AGCAGCCGCAGGAGGAGCAGCAGCAGCAGGAGGTGTACCAGATCCAAGCG
TGTGGGCACAAGTTCCACCGAGCGTGCCTCGCCGAGAACCGCAGGGCGGG
GAACATCGGCTGCCCCTGCTGCCGGGGCCCCCTAGAGAGGGGGCTGACGC
CCACGCCCACCGCGGCGGAGAGGAGAGCGACCGCAGACCGGCAGGCGCTC
TCGGAAGCCCGGGGGGCCACCCTGGACTCGGCGCTGGTTGCGATGGTGGC
CGTGCGCGAGGCGCTGACGGTGATCTCGAACGCGGGCCCGGCCCCGGCGG
TGGTGGCGGCGGCCGAGCCGGCGACGCTCGCGGCGAGGTCGACGCAGGAG
GCCGTGTCGACGGTGCTGGCGGTGGTGCGGTCGACCGCGCCGTCGGTGAC
CATGTACGCGGCGGCCTCGCACAAGTTCCACCGAGCGTGCCTCGCCGAGA
ACCGCAGGGCGGGGAACATCGGCTGCCCCTGCTGCCGGGGCCCCCTAGAG
AGGGGGCTGACGCCCACGCCCACCGCGGCGGAGAGGAGAGCGACCGCAGA
CCGGCAGGCGCTCTCGGAAGCCCGGGGGGCCACCCTGGACTCGGCGCTGG
TTGCGATGGTGGCCGTGCGCGAGGCGCTGACGGTGATCTCGAACGCGGGC
CCGGCCCCGGCGGTGGTGGCGGCGGCCGAGCCGGCGACGCTCGCGGCGAG
GTCGACGCAGGAGGCCGTGTCGACGGTGCTGGCGGTGGTGCGGTCGACCG
CGCCGTCGGTGACCATGTACGCGGCGGCCTCGGAAGGCCGAGCGGTACCA
GATCACCACCTGAGGTGTCTGGATGCGGAGAGCGAGCACGCGTTCATGGG
CAGTCTTTCGCGTCCAGTATTCCAGTTGCATCTTCGCGGCATACTTCGGA
TCGCACTGCAGCCATCCTCGTCACGTGAAGGCCGAGCGGTACCAGATCAC
CACCTGAGGTGTCTGGATGCGGAGAGCGAGCACGCGTTCATGGGCAGTCT
TTCGCGTCCAGTATTCCAGTTGCATCTTCGCGGCATACTTCGGATCGCAC
TGCAGCCATCCTCGTCACGT
back to top