prot_E-siliculosus-1a_F_contig115.974.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig115.974.1
Unique Nameprot_E-siliculosus-1a_F_contig115.974.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length175
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig115.974.1 vs. uniprot
Match: D7G4F5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4F5_ECTSI)

HSP 1 Score: 147 bits (372), Expect = 1.610e-42
Identity = 85/145 (58.62%), Postives = 92/145 (63.45%), Query Frame = 0 
Query:    1 MSNVPASNHTAPTACFPSFSPDRKTTAVAMVAAALVGGACCFAMTSAQATDADAIVAGNTNTRRVNKRPSYTRITPVLPLLLATETLRGTNKTSAGGGSSARDATCDGDTIDQITRQLVAWGWETVKLYTCVRGLWLATVLFAGT 145
            MSNV  SNHTAPTACFP F PDRKT AVA+VAAALVGGACCFAMTSAQATDADAI+                                       G G SARD  CDGDTIDQIT QLV WGW+T+K Y+C+RGL LAT+ FAGT
Sbjct:    1 MSNVHGSNHTAPTACFPRFYPDRKT-AVAIVAAALVGGACCFAMTSAQATDADAII---------------------------------------GAGYSARDVDCDGDTIDQITHQLVVWGWKTIKFYSCLRGLLLATIWFAGT 105
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BLAST of mRNA_E-siliculosus-1a_F_contig115.974.1 vs. uniprot
Match: A0A6H5L3V6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3V6_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 9.010e-11
Identity = 38/62 (61.29%), Postives = 42/62 (67.74%), Query Frame = 0 
Query:  106 CDGDTIDQITRQLVAWGWETVKLYTCVRGLWLATVLFAGTAGSVGLRRRASMLLGRAPAAVA 167
            CD D ID+IT QL+  G   + LYTC+RGL LATV  A TA S GLR R S LLGRA AA A
Sbjct:   57 CDEDIIDKITLQLIVCGSRAIMLYTCLRGLRLATVWVAVTAFSEGLRMRVSTLLGRASAAAA 118
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig115.974.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G4F5_ECTSI1.610e-4258.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L3V6_9PHAE9.010e-1161.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..133
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 152..174
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 134..151
NoneNo IPR availableTMHMMTMhelixcoord: 129..151
NoneNo IPR availableTMHMMTMhelixcoord: 28..50

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig115contigE-siliculosus-1a_F_contig115:11251..14804 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig115.974.1mRNA_E-siliculosus-1a_F_contig115.974.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig115 10000..15013 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig115.974.1 ID=prot_E-siliculosus-1a_F_contig115.974.1|Name=mRNA_E-siliculosus-1a_F_contig115.974.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=175bp
MSNVPASNHTAPTACFPSFSPDRKTTAVAMVAAALVGGACCFAMTSAQAT
DADAIVAGNTNTRRVNKRPSYTRITPVLPLLLATETLRGTNKTSAGGGSS
ARDATCDGDTIDQITRQLVAWGWETVKLYTCVRGLWLATVLFAGTAGSVG
LRRRASMLLGRAPAAVAPPAAAAG*
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