|
|
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig115.974.1 vs. uniprot
Match: D7G4F5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4F5_ECTSI) HSP 1 Score: 148 bits (373), Expect = 3.140e-38 Identity = 85/145 (58.62%), Postives = 92/145 (63.45%), Query Frame = 3
Query: 210 MSNVPASNHTAPTACFPSFSPDRKTTAVAMVAAALVGGACCFAMTSAQATDADAIVAGNTNTRRVNKRPSYTRITPVLPLLLATETLRGTNKTSAGGGSSARDATCDGDTIDQITRQLVAWGWETVKLYTCVRGLWLATVLFAGT 644
MSNV SNHTAPTACFP F PDRKT AVA+VAAALVGGACCFAMTSAQATDADAI+ G G SARD CDGDTIDQIT QLV WGW+T+K Y+C+RGL LAT+ FAGT
Sbjct: 1 MSNVHGSNHTAPTACFPRFYPDRKT-AVAIVAAALVGGACCFAMTSAQATDADAII---------------------------------------GAGYSARDVDCDGDTIDQITHQLVVWGWKTIKFYSCLRGLLLATIWFAGT 105
BLAST of mRNA_E-siliculosus-1a_F_contig115.974.1 vs. uniprot
Match: A0A6H5L3V6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3V6_9PHAE) HSP 1 Score: 85.9 bits (211), Expect = 5.020e-16 Identity = 59/99 (59.60%), Postives = 64/99 (64.65%), Query Frame = 3
Query: 525 CDGDTIDQITRQLVAWGWETVKLYTCVRGLWLATVLFAGTAGSVGLRRRASMLLGRAPAAVAPPAAAAG*VLPDPSG-DAARSRNARAGATDSQAGTIG 818
CD D ID+IT QL+ G + LYTC+RGL LATV A TA S GLR R S LLGRA AA AAAG VLP P G DA+R N AGA DSQA IG
Sbjct: 57 CDEDIIDKITLQLIVCGSRAIMLYTCLRGLRLATVWVAVTAFSEGLRMRVSTLLGRASAA-----AAAGEVLPGPGGGDASRPGNMTAGAADSQAVMIG 150
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 1 |
| Cds size | 525 |
| Model size | 1985 |
| Exons | 5 |
| Ec32 ortholog | Ec-13_003380.1 |
| Ec32 ortholog description | expressed unknown protein |
| Hectar predicted targeting category | other localisation |
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig115.974.1 >prot_E-siliculosus-1a_F_contig115.974.1 ID=prot_E-siliculosus-1a_F_contig115.974.1|Name=mRNA_E-siliculosus-1a_F_contig115.974.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=175bp
MSNVPASNHTAPTACFPSFSPDRKTTAVAMVAAALVGGACCFAMTSAQAT
DADAIVAGNTNTRRVNKRPSYTRITPVLPLLLATETLRGTNKTSAGGGSS
ARDATCDGDTIDQITRQLVAWGWETVKLYTCVRGLWLATVLFAGTAGSVG
LRRRASMLLGRAPAAVAPPAAAAG* back to topmRNA from alignment at E-siliculosus-1a_F_contig115:10000..15013- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig115.974.1 ID=mRNA_E-siliculosus-1a_F_contig115.974.1|Name=mRNA_E-siliculosus-1a_F_contig115.974.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=5014bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig115:10000..15013- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GATCAGGGGTACGTGCAGCTCGGAATGAACGACCTCATTCTTGCAGGCGA
CGATATGGCCCTACCAATGATTGTTCCCCCCCCGTGCTCTAATTTCGTTA
TTTTTCGCGGCACCGGCTAATCTCTCTTTGCGTGCGTTGTTTGCGTGCGT
TGTTCGCGTGCGTGTCTCTCTCTTGAAACAGATCAATCAGTTATTTTTCC
GAAGATCAGATGTCGAACGTCCCCGCTTCGAACCACACGGCGCCGACCGC
ATGCTTCCCAAGGTGCGCCCACGTAGGAGGGGGAGGGGATCGTAGCCATC
ACACGCGGCGTGCTTTCACGGGGCGATTGTCGTCGTCCTCGTTGTTGTTG
TTGTTGTTGTTGTTGGTTGTGATGTGGTATACACATACGTGGTCCAGCAA
GTAAACTTGTTGTCTTGTTCTCGGCGGAAGTTCCGATTCAGGGAGAGGGG
GGGGGTGAGCCTGCTGGCGTGAGGAAATGAGGTGTAGGTGCTCAGCCTGG
CTCTCGCTCGTGTCGTGTGATGTACCGAGACTGAAAATACGGCGCCAGTG
GCACATTCGCCGGGTGATGGCTTTCTTATCCCTGTGGGCCACTGCAGTAT
GCGGGGGGGGCACAAACAAAGACTTCATCCCTCTCTCGTGCTCCTTCTTT
CCGTCCGTGCTTGCAGTTTTTCCCCCGACCGGAAGACTACTGCGGTCGCT
ATGGTAGCGGCGGCTCTGGTTGGGGGAGCTTGTTGCTTCGCCATGACGTC
GGCCCAGGCGACAGACGCTGATGCCATCGTCGGTAAGCTCTACATATCTC
GGGCGTCCCACGGAATGACGGGAGCCCGACTCTCACTAACCAGACTAAAC
TGTAGATTCGGTCGTTTTTTGTACCAACTTCAAGGAGATTTCCCTTCTCC
CGAACTCCTTTGCACAACCCGCACTAAATCTGGAAAGTGCCAGTGCCTCG
CTCCCTTGACACACCTCTCGCCGGCATGGAAAGGGCCGCCGGAATCGTTG
GCATGAATACGCAAAACGGGGCAGGAGAGGAAACGATATATTCTCAGTGT
GCACCGCCTCAGTAGCTAGTACGGTCGAATATGGTGTTCAAGGAAGTGTG
CAGGACCATGTAGGTATGATTCATCGACCGAGCTACTTCCTCGACCCTTT
GTGTAACCACAACAGGAAATGTAACGTGTACCAGGTATGCATGCTGTACG
CATGCGCATGTTCGGTTTCGGTTGGCGAAGGATAACCGGAGAAGATTGTG
AGGCAGGCGGAAGTTGTATTCCCGATGGTGGTTTGTGTACAGAGTTACAC
CTGCTACACACGTGCTAGTAGGAGGAGCTGAAGAAGTAGTAGGCCAGGTG
TCTGAATGACGACCGGACGTAAGAGTAGACGCAAAAGACACGAGAAAAAA
ACTGTACGTGATGGTAACCCCGGAAGTCACCATTCTTGAACAAAATAGCA
GGAAACACAAACACCAGACGAGTCAACAAAAGACCCAGCTACACACGCAT
TACTCCTGTACTGCCGTTACTGCTGGCGACTGAAACGCTCCGAGGGACGA
ACAAGACAAGTGAGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATAA
AGTGAGCAAAATATGCGCCGCAAGTCGCTAAGGAAGCAAGGCGGATGCCG
TGAGAACGCCTGCAGACACTCCTGTCTGTACCTCCATGGCTCTTCGCCCT
CTCTGAAAAATAGAAATGCGGTCGACTCTTTGGTGATGTGTGGCCATCGG
TCAAAAGACAGAGCAAGCAAAACGTACACCCCCCCCCCCCCCCCATGGCT
GGGTTGTCTTGCCCCCGGAACAACGGCTAGGAAAGTGAGCCCTCCCCATT
GTACAGCGTCGTTTGCAAAAGGAACACACCGTCTGCTCTCAGCCAGAGGG
CTACCTCGGTGACGAAGCATATATGGATAACTTGATCTTATGTGGATGTC
GCCCACGGGGGAGATATCACTGTGTGCTGCTCGGGAAATCGTTGAAAAAC
AGAATTTTCGCTGATGTTATGGATTCATTGCTAATCTATCGTAGACTCCT
TTCTTCGATAGAGATGGAGTCGTTGGGTCATATTGATGAAATATAAAAAT
AAAATAAAAACTCGGGTATTCCATCTTCGGACAGCAGTCAGTGCCATTGC
CACGAACAGGTTCATCTCACGCCCGAGCGCCAATGGTGCCGGAGAAGGTT
CACATGACGTTGGAGTTTCTCCGCGAACGGTTCCCTTGAAAGAAAGTTGC
AGGCCCCGTGTCCTTCCTTTTTCGATTTTTCGCCGGAGCAGTCGGTCGCA
CACGGCATTGATGTCCCCACGGCATTGATGCCCCCCCCCCCCGCGCCTTT
CCATGTTTACCCTCACGCTGCCGACCGAGCTAGAACTGCAGCTCGAGACA
TTGTTGTCAGCATCGTTCAACACTCGAATGTTAAGGCCTGATTTGTGCCG
AAAAAAAAAGGCATAGCAATAAACGCCTATACTTGGAAGTTGTGGATGGA
CACGCACGGCTGGCTCTCGATGGGTCTGACCTTGGACCCACCGCTGATCA
TGCAATGCTTATCCTTTGGTTGAGAACCTCCCTCAAGAGTCACACTCGAA
CCTACACCCTGTCCAAAACCTTTCTAGCGATTCCTCTTGAGAAAAATCGG
ACCGCGCAGTGCCAACCTTTGCTGTGTATCCCTAACACTCCAAGCGCGCG
CGTGTGTGTGTGTTTCGTTCGATGCGGAATCGCCAGGCGCAGGCGGGGGG
TCCAGCGCCAGAGACGCAACTTGTGACGGGGACACCATAGACCAGATTAC
ACGCCAGCTGGTCGCGTGGGGCTGGGAGACCGTCAAACTATACACGGTGA
GCATCGCGGGTGTTCCGATTCAAGCCTCGTGGCTTGCATATTGGTTTGTG
CCCCGGCTGGGGCAGACCCGGGTACCCGCTAGCGGGTACCCGGTTCTGGG
AATTCCCGGCCGGTTCCGGTTCCAGCTGCCTTGTAGCCGGGTATTTGGTT
TTGATATTCGGCCCCAAAGCAGTGGGGTACAAGGTGATACACATAAACGG
TGCCCCAAAAATCGCGGGGCACCCCCACATTTTGATACACGGAGCCCAAC
CGGGGCACAACCGTATTTGTATTTGCTAGCGTTCCACGCGATCGGTCTTG
CCTCCGCAGCTCTGTAGCAGAAGGATTCGTCGTCTGCAAATAACGTTCAT
GCTTCATACTGCCCAAAGGTATTATGTCGAAGTTGTCTTAGGCTTTTCTG
GGCCGTCCTCAAGGAAGGGACAAGCTTTCCTTGAATGCGTTCTACCCAGC
ATAGACAAATTCAATTCACCCCGACTCAACAAAGCTTCCTTTTTCCAACC
GCAATGTTTTTACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCGCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCGCCCCCGCCCCCCCCCCCCCCCCCCCCCGCCCCCCCCC
CCCCCCCNNNNNNNNNNCTCCAGCAGAGGGCCGGCGAGGCTGGGGCGGGG
GGCCTGGGGCTCGCCGGCGTGCCCTCCCCCTCCCCTTCCCCCCCCCCCCC
CCCCCCCCCCGCTTATATATTTTTTCAGTGCGTGCGAGGCCTGTGGCTTG
CCACGGTTTTGTTCGCCGGGACGGCGGGTTCCGTGGGGCTAAGGAGGAGG
GCGTCGATGCTGCTCGGCAGGGCACCGGCGGCGGTTGCACCGCCGGCGGC
AGCGGCGGGGTAGGTGCTGCCCGACCCTAGCGGCGATGCTGCACGCTCGC
GCAACGCCAGGGCGGGCGCCACCGACTCGCAGGCCGGAACGATTGGATTA
ACTCCCGACCATCTCACCTTCGACCACGGTCGACACATCAACTGCTGACG
GGGTGAATGAAGGCGGGTCTGTTTTGTGGCACTGCTTCTTGTGGCTGGGA
CCGAACCCAACGGGGCAGGTGGTGGCACAGGTCACTGGTAGAGTGTGTTC
GCAAGCCAAACAAGGCCGAAATGGGGTGTGGTGAAGACGTGAGTTCGGTG
AAGAGGTGGCGTTTTATGAAGATCGCCGCTGGTGTTTTTCGGTTTTGGTG
TTGGGAAGGGATGGGGTACGGGCAAACACGGGCTGGGGCGTGGTTTGCAC
GGTCGAGGATTAAGTCGGGGAGGAAAAAAAAAACGAACTTGCCCATGAGC
GGCAAGTTTCGTGCCGCTTCATTTTGCGACCGATGGTACCGTACCCCTTT
CGTCGTGCGGGATTCGTTCGTTTCTCGTGCTTTCTGTTCCTACCGTAGCT
GTGTTACTTGTTTGTATTAACTTCTTGTTTTTGACGATGTTGTCTAATAA
AAAAATTTTGATTGAGCGGGTAGGGGGAACTCTTCTTTTTTTCTATTTTT
TTCTTTCTCTTCTTTTTTCCTAAAGAAAAAATACAAGTACAAACACCGAA
AGACTACCCGTTCGAGAAAAAGCCACAGTTTTTTTTGTTGGATGGTCTGC
ACCTGCGAGCGGGAATTGTCATGGAACCTTCTCTTCTTTTTTTCTGTTGG
ATGGTCTGCACCTGCGAGCGGGAAAAAATCGCCGCTTGCATAGGATGGTC
GGCAGCTGCTGAGAACTCAACGAGAGACCAAACAGGATTGGCGAGAAGGT
GCGAAAGGTGGGGGGGGGGGGCTACCGACACTTCCGGCGTGTGGCGAATA
TTCGACGATATGGGGGGATAGTTAGGAGCACTTTCTACAGGACAGGACAG
GGCTTGTTGCCTTTGGAACGAGGTGTCCCCACACCGTTCCTCGCGCTTCT
TCTCTGTAGTGTGCTCTCCTTAAACTCGCGTGGTGGGGCTTGTCAATGTA
TAAACCAGTGATAGAGCAACCCCTTAGGTTCGTTTAGCGGTACGACTGAG
GACAGCTTGGTTTCGTCCCCCTAGGTTTGGAGTACTCGGTCTCCCAGGTG
CGAGTGACTTCTTGATGGTTTGTTGGAAATTTTGCCTTCATACCTCGGCA
TGTTTCACGGATGG back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig115:10000..15013- >mRNA_E-siliculosus-1a_F_contig115.974.1 ID=mRNA_E-siliculosus-1a_F_contig115.974.1|Name=mRNA_E-siliculosus-1a_F_contig115.974.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1050bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig115:10000..15013- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTCGAACGTCCCCGCTTCGAACCACACGGCGCCGACCGCATGCTTCCC
AAGATGTCGAACGTCCCCGCTTCGAACCACACGGCGCCGACCGCATGCTT
CCCAAGTTTTTCCCCCGACCGGAAGACTACTGCGGTCGCTATGGTAGCGG
CGGCTCTGGTTGGGGGAGCTTGTTGCTTCGCCATGACGTCGGCCCAGGCG
ACAGACGCTGATGCCATCGTCGTTTTTCCCCCGACCGGAAGACTACTGCG
GTCGCTATGGTAGCGGCGGCTCTGGTTGGGGGAGCTTGTTGCTTCGCCAT
GACGTCGGCCCAGGCGACAGACGCTGATGCCATCGTCGCAGGAAACACAA
ACACCAGACGAGTCAACAAAAGACCCAGCTACACACGCATTACTCCTGTA
CTGCCGTTACTGCTGGCGACTGAAACGCTCCGAGGGACGAACAAGACAAC
AGGAAACACAAACACCAGACGAGTCAACAAAAGACCCAGCTACACACGCA
TTACTCCTGTACTGCCGTTACTGCTGGCGACTGAAACGCTCCGAGGGACG
AACAAGACAAGCGCAGGCGGGGGGTCCAGCGCCAGAGACGCAACTTGTGA
CGGGGACACCATAGACCAGATTACACGCCAGCTGGTCGCGTGGGGCTGGG
AGACCGTCAAACTATACACGGCGCAGGCGGGGGGTCCAGCGCCAGAGACG
CAACTTGTGACGGGGACACCATAGACCAGATTACACGCCAGCTGGTCGCG
TGGGGCTGGGAGACCGTCAAACTATACACGTGCGTGCGAGGCCTGTGGCT
TGCCACGGTTTTGTTCGCCGGGACGGCGGGTTCCGTGGGGCTAAGGAGGA
GGGCGTCGATGCTGCTCGGCAGGGCACCGGCGGCGGTTGCACCGCCGGCG
GCAGCGGCGGGGTAGTGCGTGCGAGGCCTGTGGCTTGCCACGGTTTTGTT
CGCCGGGACGGCGGGTTCCGTGGGGCTAAGGAGGAGGGCGTCGATGCTGC
TCGGCAGGGCACCGGCGGCGGTTGCACCGCCGGCGGCAGCGGCGGGGTAG back to top
|