prot_E-siliculosus-1a_F_contig1148.964.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig1148.964.1
Unique Nameprot_E-siliculosus-1a_F_contig1148.964.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length75
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1148.964.1 vs. uniprot
Match: A0A6H5KTK4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KTK4_9PHAE)

HSP 1 Score: 160 bits (404), Expect = 5.640e-50
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0
Query:    1 MIIPVRCFTCGKVIGNKWETYLSLLQADYNEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNSLERRTGPETD 74
            MIIPVRCFTCGKVIGNKWETYLSLLQADYNEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNSLERRTGPETD
Sbjct:    1 MIIPVRCFTCGKVIGNKWETYLSLLQADYNEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNSLERRTGPETD 74          
BLAST of mRNA_E-siliculosus-1a_F_contig1148.964.1 vs. uniprot
Match: F0YLY9_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YLY9_AURAN)

HSP 1 Score: 140 bits (352), Expect = 5.320e-42
Identity = 64/72 (88.89%), Postives = 68/72 (94.44%), Query Frame = 0
Query:    1 MIIPVRCFTCGKVIGNKWETYLSLLQADYNEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNSLERRTGPE 72
            MIIPVRCFTCGKVIGNKWE+YL LL+ADY+EGDALDELGLKRYCCRRMVLTHVDLIEKLLNYN+LERR   E
Sbjct:    1 MIIPVRCFTCGKVIGNKWESYLELLKADYSEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNTLERRVTQE 72          
BLAST of mRNA_E-siliculosus-1a_F_contig1148.964.1 vs. uniprot
Match: A0A836CHW2_9STRA (DNA-directed RNA polymerase I, II, and III subunit RPABC5 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHW2_9STRA)

HSP 1 Score: 139 bits (349), Expect = 1.400e-41
Identity = 64/68 (94.12%), Postives = 66/68 (97.06%), Query Frame = 0
Query:    1 MIIPVRCFTCGKVIGNKWETYLSLLQADYNEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNSLERR 68
            MIIPVRCFTCGKVIGNKWETYL LLQ+D +EGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNSLERR
Sbjct:    1 MIIPVRCFTCGKVIGNKWETYLGLLQSDISEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNSLERR 68          
BLAST of mRNA_E-siliculosus-1a_F_contig1148.964.1 vs. uniprot
Match: A0A8J2SAT8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SAT8_9STRA)

HSP 1 Score: 137 bits (346), Expect = 4.260e-41
Identity = 63/74 (85.14%), Postives = 70/74 (94.59%), Query Frame = 0
Query:    1 MIIPVRCFTCGKVIGNKWETYLSLLQADYNEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNSLERR--TGPE 72
            MIIPVRCFTCGKV+GNKW++YL LL+ADY+EGDALDELGLKRYCCRRMVLTHVDLIEKLLNYN+LERR  T P+
Sbjct:    1 MIIPVRCFTCGKVVGNKWDSYLELLKADYSEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNTLERRVVTDPQ 74          
BLAST of mRNA_E-siliculosus-1a_F_contig1148.964.1 vs. uniprot
Match: A0A7S1V7Q3_9STRA (Hypothetical protein n=2 Tax=Bacillariophyta TaxID=2836 RepID=A0A7S1V7Q3_9STRA)

HSP 1 Score: 134 bits (338), Expect = 1.720e-39
Identity = 61/63 (96.83%), Postives = 63/63 (100.00%), Query Frame = 0
Query:    1 MIIPVRCFTCGKVIGNKWETYLSLLQADYNEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYN 63
            MIIPVRCFTCGKVIGNKWETYLSLLQADY+EGDALDELGLKRYCCRRM+LTHVDLIEKLLNYN
Sbjct:   33 MIIPVRCFTCGKVIGNKWETYLSLLQADYSEGDALDELGLKRYCCRRMLLTHVDLIEKLLNYN 95          
BLAST of mRNA_E-siliculosus-1a_F_contig1148.964.1 vs. uniprot
Match: B8C402_THAPS (DNA directed RNA polymerase II subunit, 8.2kDa, rpb10-like protein (Fragment) n=3 Tax=Bacillariophyta TaxID=2836 RepID=B8C402_THAPS)

HSP 1 Score: 131 bits (330), Expect = 8.430e-39
Identity = 59/64 (92.19%), Postives = 63/64 (98.44%), Query Frame = 0
Query:    1 MIIPVRCFTCGKVIGNKWETYLSLLQADYNEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNS 64
            MIIPVRCFTCGKVIGNKWETYL LLQADY+EGDALDELGL+RYCCRRM+LTHVDLIEKLLNYN+
Sbjct:    1 MIIPVRCFTCGKVIGNKWETYLYLLQADYSEGDALDELGLRRYCCRRMMLTHVDLIEKLLNYNT 64          
BLAST of mRNA_E-siliculosus-1a_F_contig1148.964.1 vs. uniprot
Match: A0A2P6TBS1_CHLSO (DNA-directed RNA polymerases and III subunit RPABC5 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TBS1_CHLSO)

HSP 1 Score: 132 bits (332), Expect = 1.020e-38
Identity = 58/67 (86.57%), Postives = 64/67 (95.52%), Query Frame = 0
Query:    1 MIIPVRCFTCGKVIGNKWETYLSLLQADYNEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNSLER 67
            MIIPVRCFTCGKVIGNKWETYL LLQA+Y+EGDA+D LGL RYCCRRM++THVDLIEKLLNYN+LER
Sbjct:    1 MIIPVRCFTCGKVIGNKWETYLDLLQAEYSEGDAMDALGLNRYCCRRMIMTHVDLIEKLLNYNTLER 67          
BLAST of mRNA_E-siliculosus-1a_F_contig1148.964.1 vs. uniprot
Match: A0A1E7EXD3_9STRA (DNA-directed RNA polymerases I, II, and III subunit rpabc5 n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EXD3_9STRA)

HSP 1 Score: 131 bits (329), Expect = 1.490e-38
Identity = 59/64 (92.19%), Postives = 63/64 (98.44%), Query Frame = 0
Query:    1 MIIPVRCFTCGKVIGNKWETYLSLLQADYNEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNS 64
            MIIPVRCFTCGKVI NKWETYLSLLQAD++EGDALDELGLKRYCCRRM+LTHVDLIEKLLNYN+
Sbjct:    1 MIIPVRCFTCGKVIANKWETYLSLLQADFSEGDALDELGLKRYCCRRMMLTHVDLIEKLLNYNT 64          
BLAST of mRNA_E-siliculosus-1a_F_contig1148.964.1 vs. uniprot
Match: A0A087STN7_AUXPR (DNA-directed RNA polymerase subunit 10-like protein n=1 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A087STN7_AUXPR)

HSP 1 Score: 131 bits (329), Expect = 1.580e-38
Identity = 57/67 (85.07%), Postives = 64/67 (95.52%), Query Frame = 0
Query:    1 MIIPVRCFTCGKVIGNKWETYLSLLQADYNEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNSLER 67
            MIIPVRCFTCGKVIGNKW+TYL LLQA+Y+EGDA+D LGL RYCCRRM++THVDLIEKLLNYN+LER
Sbjct:    1 MIIPVRCFTCGKVIGNKWDTYLDLLQAEYSEGDAMDALGLSRYCCRRMIMTHVDLIEKLLNYNTLER 67          
BLAST of mRNA_E-siliculosus-1a_F_contig1148.964.1 vs. uniprot
Match: A0A7R9WWK7_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WWK7_9STRA)

HSP 1 Score: 133 bits (335), Expect = 1.600e-38
Identity = 60/64 (93.75%), Postives = 64/64 (100.00%), Query Frame = 0
Query:    1 MIIPVRCFTCGKVIGNKWETYLSLLQADYNEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNS 64
            MIIPVRCFTCGKVIGNKWETYLSLLQAD++EGDALDELGLKRYCCRRM+LTHVDLIEKLLNYN+
Sbjct:   74 MIIPVRCFTCGKVIGNKWETYLSLLQADFSEGDALDELGLKRYCCRRMMLTHVDLIEKLLNYNT 137          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1148.964.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KTK4_9PHAE5.640e-50100.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
F0YLY9_AURAN5.320e-4288.89Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A836CHW2_9STRA1.400e-4194.12DNA-directed RNA polymerase I, II, and III subunit... [more]
A0A8J2SAT8_9STRA4.260e-4185.14Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S1V7Q3_9STRA1.720e-3996.83Hypothetical protein n=2 Tax=Bacillariophyta TaxID... [more]
B8C402_THAPS8.430e-3992.19DNA directed RNA polymerase II subunit, 8.2kDa, rp... [more]
A0A2P6TBS1_CHLSO1.020e-3886.57DNA-directed RNA polymerases and III subunit RPABC... [more]
A0A1E7EXD3_9STRA1.490e-3892.19DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A087STN7_AUXPR1.580e-3885.07DNA-directed RNA polymerase subunit 10-like protei... [more]
A0A7R9WWK7_9STRA1.600e-3893.75Hypothetical protein n=1 Tax=Craspedostauros austr... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.10.60coord: 1..70
e-value: 2.4E-40
score: 138.3
NoneNo IPR availablePANTHERPTHR23431:SF5coord: 1..69
NoneNo IPR availablePRODOMPD006539coord: 9..63
e-value: 9.0E-18
score: 215.0
IPR000268DNA-directed RNA polymerase, subunit N/Rpb10PIRSFPIRSF005653RpoN_RPB10coord: 1..72
e-value: 1.7E-33
score: 112.4
IPR000268DNA-directed RNA polymerase, subunit N/Rpb10PFAMPF01194RNA_pol_Ncoord: 1..59
e-value: 7.7E-34
score: 115.8
IPR000268DNA-directed RNA polymerase, subunit N/Rpb10PANTHERPTHR23431FAMILY NOT NAMEDcoord: 1..69
IPR000268DNA-directed RNA polymerase, subunit N/Rpb10HAMAPMF_00250RNApol_arch_Ncoord: 1..63
score: 19.982
IPR020789RNA polymerases, subunit N, zinc binding sitePROSITEPS01112RNA_POL_N_8KDcoord: 2..11
IPR023580RNA polymerase subunit RPB10SUPERFAMILY46924RNA polymerase subunit RPB10coord: 1..63

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1148contigE-siliculosus-1a_F_contig1148:29643..31027 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1148.964.1mRNA_E-siliculosus-1a_F_contig1148.964.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig1148 29577..31081 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig1148.964.1 ID=prot_E-siliculosus-1a_F_contig1148.964.1|Name=mRNA_E-siliculosus-1a_F_contig1148.964.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=75bp
MIIPVRCFTCGKVIGNKWETYLSLLQADYNEGDALDELGLKRYCCRRMVL
THVDLIEKLLNYNSLERRTGPETD*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR023580RNA_pol_su_RPB10
IPR020789RNA_pol_suN_Zn-BS
IPR000268RNAP_N/Rpb10