mRNA_E-siliculosus-1a_F_contig1148.964.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1148.964.1 vs. uniprot
Match: A0A6H5KTK4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KTK4_9PHAE) HSP 1 Score: 158 bits (399), Expect = 1.690e-48 Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 1
Query: 55 MIIPVRCFTCGKVIGNKWETYLSLLQADYNEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNSLERRTGPETD 276
MIIPVRCFTCGKVIGNKWETYLSLLQADYNEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNSLERRTGPETD
Sbjct: 1 MIIPVRCFTCGKVIGNKWETYLSLLQADYNEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNSLERRTGPETD 74
BLAST of mRNA_E-siliculosus-1a_F_contig1148.964.1 vs. uniprot
Match: F0YLY9_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YLY9_AURAN) HSP 1 Score: 138 bits (347), Expect = 1.560e-40 Identity = 64/72 (88.89%), Postives = 68/72 (94.44%), Query Frame = 1
Query: 55 MIIPVRCFTCGKVIGNKWETYLSLLQADYNEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNSLERRTGPE 270
MIIPVRCFTCGKVIGNKWE+YL LL+ADY+EGDALDELGLKRYCCRRMVLTHVDLIEKLLNYN+LERR E
Sbjct: 1 MIIPVRCFTCGKVIGNKWESYLELLKADYSEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNTLERRVTQE 72
BLAST of mRNA_E-siliculosus-1a_F_contig1148.964.1 vs. uniprot
Match: A0A836CHW2_9STRA (DNA-directed RNA polymerase I, II, and III subunit RPABC5 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHW2_9STRA) HSP 1 Score: 137 bits (345), Expect = 2.890e-40 Identity = 64/68 (94.12%), Postives = 66/68 (97.06%), Query Frame = 1
Query: 55 MIIPVRCFTCGKVIGNKWETYLSLLQADYNEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNSLERR 258
MIIPVRCFTCGKVIGNKWETYL LLQ+D +EGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNSLERR
Sbjct: 1 MIIPVRCFTCGKVIGNKWETYLGLLQSDISEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNSLERR 68
BLAST of mRNA_E-siliculosus-1a_F_contig1148.964.1 vs. uniprot
Match: A0A8J2SAT8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SAT8_9STRA) HSP 1 Score: 135 bits (341), Expect = 1.240e-39 Identity = 61/68 (89.71%), Postives = 67/68 (98.53%), Query Frame = 1
Query: 55 MIIPVRCFTCGKVIGNKWETYLSLLQADYNEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNSLERR 258
MIIPVRCFTCGKV+GNKW++YL LL+ADY+EGDALDELGLKRYCCRRMVLTHVDLIEKLLNYN+LERR
Sbjct: 1 MIIPVRCFTCGKVVGNKWDSYLELLKADYSEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNTLERR 68
BLAST of mRNA_E-siliculosus-1a_F_contig1148.964.1 vs. uniprot
Match: A0A7S1V7Q3_9STRA (Hypothetical protein n=2 Tax=Bacillariophyta TaxID=2836 RepID=A0A7S1V7Q3_9STRA) HSP 1 Score: 133 bits (334), Expect = 3.520e-38 Identity = 61/63 (96.83%), Postives = 63/63 (100.00%), Query Frame = 1
Query: 55 MIIPVRCFTCGKVIGNKWETYLSLLQADYNEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYN 243
MIIPVRCFTCGKVIGNKWETYLSLLQADY+EGDALDELGLKRYCCRRM+LTHVDLIEKLLNYN
Sbjct: 33 MIIPVRCFTCGKVIGNKWETYLSLLQADYSEGDALDELGLKRYCCRRMLLTHVDLIEKLLNYN 95
BLAST of mRNA_E-siliculosus-1a_F_contig1148.964.1 vs. uniprot
Match: UPI000BA8107A (DNA-directed RNA polymerases I, II, and III subunit RPABC5 n=1 Tax=Limulus polyphemus TaxID=6850 RepID=UPI000BA8107A) HSP 1 Score: 131 bits (329), Expect = 1.420e-37 Identity = 62/83 (74.70%), Postives = 67/83 (80.72%), Query Frame = 1
Query: 7 FTVASGSPHTCTTSSTMIIPVRCFTCGKVIGNKWETYLSLLQADYNEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNSLER 255
FT+ S H C + MIIPVRCFTCGKVIGNKWE YL LLQA+Y EGDALD LGLKRYCCRRM+L HVDLIEKLLNY LE+
Sbjct: 12 FTILHISYHLCLSEKEMIIPVRCFTCGKVIGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLGHVDLIEKLLNYAPLEK 94
BLAST of mRNA_E-siliculosus-1a_F_contig1148.964.1 vs. uniprot
Match: B8C402_THAPS (DNA directed RNA polymerase II subunit, 8.2kDa, rpb10-like protein (Fragment) n=3 Tax=Bacillariophyta TaxID=2836 RepID=B8C402_THAPS) HSP 1 Score: 130 bits (326), Expect = 1.720e-37 Identity = 59/64 (92.19%), Postives = 63/64 (98.44%), Query Frame = 1
Query: 55 MIIPVRCFTCGKVIGNKWETYLSLLQADYNEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNS 246
MIIPVRCFTCGKVIGNKWETYL LLQADY+EGDALDELGL+RYCCRRM+LTHVDLIEKLLNYN+
Sbjct: 1 MIIPVRCFTCGKVIGNKWETYLYLLQADYSEGDALDELGLRRYCCRRMMLTHVDLIEKLLNYNT 64
BLAST of mRNA_E-siliculosus-1a_F_contig1148.964.1 vs. uniprot
Match: A0A2P6TBS1_CHLSO (DNA-directed RNA polymerases and III subunit RPABC5 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TBS1_CHLSO) HSP 1 Score: 130 bits (328), Expect = 2.070e-37 Identity = 58/67 (86.57%), Postives = 64/67 (95.52%), Query Frame = 1
Query: 55 MIIPVRCFTCGKVIGNKWETYLSLLQADYNEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNSLER 255
MIIPVRCFTCGKVIGNKWETYL LLQA+Y+EGDA+D LGL RYCCRRM++THVDLIEKLLNYN+LER
Sbjct: 1 MIIPVRCFTCGKVIGNKWETYLDLLQAEYSEGDAMDALGLNRYCCRRMIMTHVDLIEKLLNYNTLER 67
BLAST of mRNA_E-siliculosus-1a_F_contig1148.964.1 vs. uniprot
Match: A0A1E7EXD3_9STRA (DNA-directed RNA polymerases I, II, and III subunit rpabc5 n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EXD3_9STRA) HSP 1 Score: 129 bits (325), Expect = 3.040e-37 Identity = 59/64 (92.19%), Postives = 63/64 (98.44%), Query Frame = 1
Query: 55 MIIPVRCFTCGKVIGNKWETYLSLLQADYNEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNS 246
MIIPVRCFTCGKVI NKWETYLSLLQAD++EGDALDELGLKRYCCRRM+LTHVDLIEKLLNYN+
Sbjct: 1 MIIPVRCFTCGKVIANKWETYLSLLQADFSEGDALDELGLKRYCCRRMMLTHVDLIEKLLNYNT 64
BLAST of mRNA_E-siliculosus-1a_F_contig1148.964.1 vs. uniprot
Match: A0A087STN7_AUXPR (DNA-directed RNA polymerase subunit 10-like protein n=1 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A087STN7_AUXPR) HSP 1 Score: 129 bits (325), Expect = 3.220e-37 Identity = 57/67 (85.07%), Postives = 64/67 (95.52%), Query Frame = 1
Query: 55 MIIPVRCFTCGKVIGNKWETYLSLLQADYNEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNSLER 255
MIIPVRCFTCGKVIGNKW+TYL LLQA+Y+EGDA+D LGL RYCCRRM++THVDLIEKLLNYN+LER
Sbjct: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQAEYSEGDAMDALGLSRYCCRRMIMTHVDLIEKLLNYNTLER 67 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1148.964.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1148.964.1 >prot_E-siliculosus-1a_F_contig1148.964.1 ID=prot_E-siliculosus-1a_F_contig1148.964.1|Name=mRNA_E-siliculosus-1a_F_contig1148.964.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=75bp MIIPVRCFTCGKVIGNKWETYLSLLQADYNEGDALDELGLKRYCCRRMVLback to top mRNA from alignment at E-siliculosus-1a_F_contig1148:29577..31081- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1148.964.1 ID=mRNA_E-siliculosus-1a_F_contig1148.964.1|Name=mRNA_E-siliculosus-1a_F_contig1148.964.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1505bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1148:29577..31081- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1148:29577..31081- >mRNA_E-siliculosus-1a_F_contig1148.964.1 ID=mRNA_E-siliculosus-1a_F_contig1148.964.1|Name=mRNA_E-siliculosus-1a_F_contig1148.964.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=450bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1148:29577..31081- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |