prot_E-siliculosus-1a_F_contig1126.842.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig1126.842.1
Unique Nameprot_E-siliculosus-1a_F_contig1126.842.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length136
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1126.842.1 vs. uniprot
Match: A0A6H5KR73_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR73_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 7.820e-20
Identity = 60/84 (71.43%), Postives = 61/84 (72.62%), Query Frame = 0 
Query:   64 MRTPVRVIGAILSTLVYLSCASVGRALAEEVAVVAPEERDPPQPQEQQQQ-----------LEKFQTESGPAAGEEGNAVSEYE 136
            MRTPVRVI  ILSTLVYL CASVGRALAEEVAVVAPEERDPPQ                  LE+ QTESGPAAGEEGNAVSE E
Sbjct:    1 MRTPVRVICVILSTLVYLFCASVGRALAEEVAVVAPEERDPPQXXXXXXXXXXXXXXXXXXLEQLQTESGPAAGEEGNAVSEDE 84
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1126.842.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KR73_9PHAE7.820e-2071.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 68..91
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..67
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 92..136

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1126contigE-siliculosus-1a_F_contig1126:32319..32726 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1126.842.1mRNA_E-siliculosus-1a_F_contig1126.842.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig1126 32319..32727 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig1126.842.1 ID=prot_E-siliculosus-1a_F_contig1126.842.1|Name=mRNA_E-siliculosus-1a_F_contig1126.842.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=136bp
SAVGGGREALAQRGALQLEVLSGRKRRASTTARQDPASDLQRTILVGLGT
RATAAVCTRRRRIMRTPVRVIGAILSTLVYLSCASVGRALAEEVAVVAPE
ERDPPQPQEQQQQLEKFQTESGPAAGEEGNAVSEYE
back to top