mRNA_E-siliculosus-1a_F_contig1126.842.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1126.842.1
Unique NamemRNA_E-siliculosus-1a_F_contig1126.842.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1126.842.1 vs. uniprot
Match: A0A6H5KR73_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR73_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 7.820e-20
Identity = 60/84 (71.43%), Postives = 61/84 (72.62%), Query Frame = 1 
Query:  190 MRTPVRVIGAILSTLVYLSCASVGRALAEEVAVVAPEERDPPQPQEQQQQ-----------LEKFQTESGPAAGEEGNAVSEYE 408
            MRTPVRVI  ILSTLVYL CASVGRALAEEVAVVAPEERDPPQ                  LE+ QTESGPAAGEEGNAVSE E
Sbjct:    1 MRTPVRVICVILSTLVYLFCASVGRALAEEVAVVAPEERDPPQXXXXXXXXXXXXXXXXXXLEQLQTESGPAAGEEGNAVSEDE 84
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1126.842.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KR73_9PHAE7.820e-2071.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1126contigE-siliculosus-1a_F_contig1126:32319..32727 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size408
Model size410
Exons1
Hectar predicted targeting categorysignal anchor
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927634.0840566-CDS-E-siliculosus-1a_F_contig1126:32318..327261622927634.0840566-CDS-E-siliculosus-1a_F_contig1126:32318..32726Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1126 32319..32726 +
1696318618.7253387-CDS-E-siliculosus-1a_F_contig1126:32318..327261696318618.7253387-CDS-E-siliculosus-1a_F_contig1126:32318..32726Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1126 32319..32726 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1126.842.1prot_E-siliculosus-1a_F_contig1126.842.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1126 32319..32726 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1126.842.1

>prot_E-siliculosus-1a_F_contig1126.842.1 ID=prot_E-siliculosus-1a_F_contig1126.842.1|Name=mRNA_E-siliculosus-1a_F_contig1126.842.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=136bp
SAVGGGREALAQRGALQLEVLSGRKRRASTTARQDPASDLQRTILVGLGT
RATAAVCTRRRRIMRTPVRVIGAILSTLVYLSCASVGRALAEEVAVVAPE
ERDPPQPQEQQQQLEKFQTESGPAAGEEGNAVSEYE
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mRNA from alignment at E-siliculosus-1a_F_contig1126:32319..32727+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1126.842.1 ID=mRNA_E-siliculosus-1a_F_contig1126.842.1|Name=mRNA_E-siliculosus-1a_F_contig1126.842.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=409bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1126:32319..32727+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TCCGCTGTCGGCGGGGGCCGAGAGGCACTCGCACAGCGAGGAGCACTTCA
GCTCGAGGTGTTGTCAGGAAGGAAAAGGCGGGCATCCACAACAGCAAGGC
AAGACCCGGCATCCGATCTACAGCGCACGATCCTTGTTGGTTTGGGTACG
CGTGCTACAGCTGCTGTGTGCACTAGAAGAAGGAGGATCATGCGCACTCC
TGTGCGCGTGATCGGCGCGATCCTGTCGACGTTGGTCTACCTTTCCTGTG
CTTCTGTGGGCAGGGCGCTCGCGGAGGAGGTCGCGGTGGTTGCGCCCGAG
GAACGAGACCCACCGCAACCGCAGGAGCAGCAGCAGCAGCTCGAGAAATT
TCAAACGGAATCAGGACCTGCGGCTGGGGAGGAAGGAAACGCGGTGAGCG
AGTACGAGG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1126:32319..32727+

>mRNA_E-siliculosus-1a_F_contig1126.842.1 ID=mRNA_E-siliculosus-1a_F_contig1126.842.1|Name=mRNA_E-siliculosus-1a_F_contig1126.842.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=816bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1126:32319..32727+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TCCGCTGTCGGCGGGGGCCGAGAGGCACTCGCACAGCGAGGAGCACTTCA
GCTCGAGGTGTTGTCAGGAAGGAAAAGGCGGGCATCCACAACAGCAAGGC
AAGACCCGGCATCCGATCTACAGCGCACGATCCTTGTTGGTTTGGGTACG
CGTGCTACAGCTGCTGTGTGCACTAGAAGAAGGAGGATCATGCGCACTCC
TGTGCGCGTGATCGGCGCGATCCTGTCGACGTTGGTCTACCTTTCCTGTG
CTTCTGTGGGCAGGGCGCTCGCGGAGGAGGTCGCGGTGGTTGCGCCCGAG
GAACGAGACCCACCGCAACCGCAGGAGCAGCAGCAGCAGCTCGAGAAATT
TCAAACGGAATCAGGACCTGCGGCTGGGGAGGAAGGAAACGCGGTGAGCG
AGTACGAGTCCGCTGTCGGCGGGGGCCGAGAGGCACTCGCACAGCGAGGA
GCACTTCAGCTCGAGGTGTTGTCAGGAAGGAAAAGGCGGGCATCCACAAC
AGCAAGGCAAGACCCGGCATCCGATCTACAGCGCACGATCCTTGTTGGTT
TGGGTACGCGTGCTACAGCTGCTGTGTGCACTAGAAGAAGGAGGATCATG
CGCACTCCTGTGCGCGTGATCGGCGCGATCCTGTCGACGTTGGTCTACCT
TTCCTGTGCTTCTGTGGGCAGGGCGCTCGCGGAGGAGGTCGCGGTGGTTG
CGCCCGAGGAACGAGACCCACCGCAACCGCAGGAGCAGCAGCAGCAGCTC
GAGAAATTTCAAACGGAATCAGGACCTGCGGCTGGGGAGGAAGGAAACGC
GGTGAGCGAGTACGAG
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