prot_E-siliculosus-1a_F_contig11259.834.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig11259.834.1
Unique Nameprot_E-siliculosus-1a_F_contig11259.834.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length53
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig11259.834.1 vs. uniprot
Match: D8LFB9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFB9_ECTSI)

HSP 1 Score: 80.1 bits (196), Expect = 8.140e-19
Identity = 41/53 (77.36%), Postives = 44/53 (83.02%), Query Frame = 0 
Query:    1 LLGTLLVKPRLAYLLVVCSIWPYAGAVSSSRVYVRWVPSHMIADVPCSHTRFF 53
            LLGTLLVKPRLA LLVVCSI PY GAVSSS VYVRWVPSH++ADV   +T  F
Sbjct:    4 LLGTLLVKPRLACLLVVCSILPYPGAVSSSVVYVRWVPSHIVADVHAHNTPVF 56
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig11259.834.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LFB9_ECTSI8.140e-1977.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 12..34
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 35..53
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..11
NoneNo IPR availableTMHMMTMhelixcoord: 12..34

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig11259contigE-siliculosus-1a_F_contig11259:1190..1348 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig11259.834.1mRNA_E-siliculosus-1a_F_contig11259.834.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig11259 1190..1348 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig11259.834.1 ID=prot_E-siliculosus-1a_F_contig11259.834.1|Name=mRNA_E-siliculosus-1a_F_contig11259.834.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=53bp
LLGTLLVKPRLAYLLVVCSIWPYAGAVSSSRVYVRWVPSHMIADVPCSHT
RFF
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