mRNA_E-siliculosus-1a_F_contig11259.834.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig11259.834.1
Unique NamemRNA_E-siliculosus-1a_F_contig11259.834.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig11259.834.1 vs. uniprot
Match: D8LFB9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFB9_ECTSI)

HSP 1 Score: 80.1 bits (196), Expect = 8.140e-19
Identity = 41/53 (77.36%), Postives = 44/53 (83.02%), Query Frame = 1 
Query:    1 LLGTLLVKPRLAYLLVVCSIWPYAGAVSSSRVYVRWVPSHMIADVPCSHTRFF 159
            LLGTLLVKPRLA LLVVCSI PY GAVSSS VYVRWVPSH++ADV   +T  F
Sbjct:    4 LLGTLLVKPRLACLLVVCSILPYPGAVSSSVVYVRWVPSHIVADVHAHNTPVF 56
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig11259.834.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LFB9_ECTSI8.140e-1977.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig11259contigE-siliculosus-1a_F_contig11259:1190..1348 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size159
Model size159
Exons1
Hectar predicted targeting categorysignal peptide
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927633.8675861-CDS-E-siliculosus-1a_F_contig11259:1189..13481622927633.8675861-CDS-E-siliculosus-1a_F_contig11259:1189..1348Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11259 1190..1348 +
1696318618.6630323-CDS-E-siliculosus-1a_F_contig11259:1189..13481696318618.6630323-CDS-E-siliculosus-1a_F_contig11259:1189..1348Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11259 1190..1348 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig11259.834.1prot_E-siliculosus-1a_F_contig11259.834.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig11259 1190..1348 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig11259.834.1

>prot_E-siliculosus-1a_F_contig11259.834.1 ID=prot_E-siliculosus-1a_F_contig11259.834.1|Name=mRNA_E-siliculosus-1a_F_contig11259.834.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=53bp
LLGTLLVKPRLAYLLVVCSIWPYAGAVSSSRVYVRWVPSHMIADVPCSHT
RFF
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mRNA from alignment at E-siliculosus-1a_F_contig11259:1190..1348+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig11259.834.1 ID=mRNA_E-siliculosus-1a_F_contig11259.834.1|Name=mRNA_E-siliculosus-1a_F_contig11259.834.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=159bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11259:1190..1348+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CTCCTTGGAACCTTGCTGGTGAAACCCCGCTTGGCCTACCTACTTGTTGT
TTGCTCGATCTGGCCATACGCTGGTGCTGTATCATCTTCACGAGTCTATG
TACGCTGGGTGCCATCTCATATGATTGCAGATGTTCCATGCTCACACACC
CGATTTTTT
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig11259:1190..1348+

>mRNA_E-siliculosus-1a_F_contig11259.834.1 ID=mRNA_E-siliculosus-1a_F_contig11259.834.1|Name=mRNA_E-siliculosus-1a_F_contig11259.834.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=318bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11259:1190..1348+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CTCCTTGGAACCTTGCTGGTGAAACCCCGCTTGGCCTACCTACTTGTTGT
TTGCTCGATCTGGCCATACGCTGGTGCTGTATCATCTTCACGAGTCTATG
TACGCTGGGTGCCATCTCATATGATTGCAGATGTTCCATGCTCACACACC
CGATTTTTTCTCCTTGGAACCTTGCTGGTGAAACCCCGCTTGGCCTACCT
ACTTGTTGTTTGCTCGATCTGGCCATACGCTGGTGCTGTATCATCTTCAC
GAGTCTATGTACGCTGGGTGCCATCTCATATGATTGCAGATGTTCCATGC
TCACACACCCGATTTTTT
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