prot_E-siliculosus-1a_F_contig1122.817.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig1122.817.1
Unique Nameprot_E-siliculosus-1a_F_contig1122.817.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length525
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1122.817.1 vs. uniprot
Match: D7FVL8_ECTSI (Cnd3 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVL8_ECTSI)

HSP 1 Score: 598 bits (1541), Expect = 1.350e-199
Identity = 477/529 (90.17%), Postives = 482/529 (91.12%), Query Frame = 0 
Query:    1 LQALSDLSLIFRSAVLGSTGDVLNMFADILKDRSANRGMTAVAAEAISRLLFFELSHDPELLARLVVLYFEKGSAADPSAGPRGNEDGXXXXXXXDAKAVGSSVRLSQILGVYFRSLPSAGPRVRDMLSESVRHVMEVLRSIAELNVVAEKNNENDANKTVAMIEVPSQDVVKFVRELLMVQQEESALREAEAAEAAEESSLAKKEVEVEGQEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVDATGHVALCITEELWTLSGIDGVSELAASLAKVLTSLPLPEDDQVTLKRLRKNVDRLESLGDSRLGAKVSRVIAKYAEVLLAADLTPDDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLQPPSRRPSRQSKVAARERMAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----EDDGTEHGQAEAEDGRGETVDXXXXXXXXXXXXXXXXXGYESSATKVSSPAREKRSSTRRRSSRARASPLAEISNSPGRGRRLRA 524
            +QALSDLSLIFRSAVLGSTGDVLNMFADILKDRSANRGMTAVAAEAISRLLFFELSHDPELLARLVVLYFEKGSAADPSAG RG+EDG       DAKAVGSSVRLSQILGVYFRSLPSAGPRVRDMLSESVR+VM VLR IAELNV AEKNNENDANKTVA IEVP QDVVKFVRELLMVQQEESALREAEAAE   E SL KKEVE EGQ  XXXXXXXXXXXXXXXXXXXXXXXXXXXXGVDATGHVALCITEELWTLSGIDGVSELAASLAKVLTSLPLPEDDQVTLKRLRKNVDRLESLGDSRLGAKVSRVIAKYAEVL AADLTPDDS  XXXXXXXXXXXX              XXXXXXXXXXXXXXXXXXXXXX LQPPSRRPSRQSKVAARERMAH XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     EDDGTEHGQAEAEDGRGETVDXXXXXXXXXXXXXXXX  YES+ATKVSSPAREKRSSTRRRSSRA+ASPLAEISNSPGRGRRLRA
Sbjct:  677 MQALSDLSLIFRSAVLGSTGDVLNMFADILKDRSANRGMTAVAAEAISRLLFFELSHDPELLARLVVLYFEKGSAADPSAGSRGDEDGEEEDLEEDAKAVGSSVRLSQILGVYFRSLPSAGPRVRDMLSESVRYVMGVLRGIAELNVAAEKNNENDANKTVAKIEVPFQDVVKFVRELLMVQQEESALREAEAAE---EPSLTKKEVEEEGQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVDATGHVALCITEELWTLSGIDGVSELAASLAKVLTSLPLPEDDQVTLKRLRKNVDRLESLGDSRLGAKVSRVIAKYAEVLFAADLTPDDSDSXXXXXXXXXXXXEHTRAADKSGDEAEXXXXXXXXXXXXXXXXXXXXXXXLQPPSRRPSRQSKVAARERMAHAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEDDGTEHGQAEAEDGRGETVDXXXXXXXXXXXXXXXX--YESAATKVSSPAREKRSSTRRRSSRAKASPLAEISNSPGRGRRLRA 1200
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BLAST of mRNA_E-siliculosus-1a_F_contig1122.817.1 vs. uniprot
Match: A0A6H5L8W1_9PHAE (Cnd3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8W1_9PHAE)

HSP 1 Score: 576 bits (1484), Expect = 9.910e-192
Identity = 440/524 (83.97%), Postives = 446/524 (85.11%), Query Frame = 0 
Query:    1 LQALSDLSLIFRSAVLGSTGDVLNMFADILKDRSANRGMTAVAAEAISRLLFFELSHDPELLARLVVLYFEKGSAADPSAGPRGNEDGXXXXXXXDAKAVGSSVRLSQILGVYFRSLPSAGPRVRDMLSESVRHVMEVLRSIAELNVVAEKNNENDANKTVAMIEVPSQDVVKFVRELLMVQQEESALREAEAAEAAEESSLAKKEVEVEGQEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVDATGHVALCITEELWTLSGIDGVSELAASLAKVLTSLPLPEDDQVTLKRLRKNVDRLESLGDSRLGAKVSRVIAKYAEVLLAADLTPDDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLQPPSRRPSRQSKVAARERMAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDDGTEHGQAEAEDGRGETVDXXXXXXXXXXXXXXXXXGYESSATKVSSPAREKRSSTRRRSSRARASPLAEISNSPGRGRRLRA 524
            +QALSDLSLIFRSAVLGSTGDVLNMFADILKDRSANRGMTAVAAEAISRLLFFELSHDPELLARL+VLYFEKGSAADPS GPRG+EDG       DAKAVGSSVRLSQILGVYFRSLPSAGPRVRDMLSESVRHVM VLR IAELNV AEKNNENDANKTVAMIEVPSQDVVKFVRELLMVQQEESALREAEAAE                   XXXXXXXXXXXXXXXXXXXXXX      GVDATGHVALCITEELWTLSGIDGVSELAASLAKVLTSLPLPEDDQVTLKRLRKNVDRLESLGDSRLGAKVSRVIAKYAEVLLAAD TPDDS                      XXXXXXXXXXXXXXXXXX          SLQ PSRRP RQSKVAARERMAH XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX EDDGTEHGQAEA DGRG TVDXXXXXXXXXXXXXXX  GYES+ TKVSSPAREKRSSTRR+SSRA+ASPLAEISNSPGRGRRLRA
Sbjct:  628 MQALSDLSLIFRSAVLGSTGDVLNMFADILKDRSANRGMTAVAAEAISRLLFFELSHDPELLARLIVLYFEKGSAADPSVGPRGDEDGEEEGLEEDAKAVGSSVRLSQILGVYFRSLPSAGPRVRDMLSESVRHVMGVLRGIAELNVAAEKNNENDANKTVAMIEVPSQDVVKFVRELLMVQQEESALREAEAAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAGVAGGVDATGHVALCITEELWTLSGIDGVSELAASLAKVLTSLPLPEDDQVTLKRLRKNVDRLESLGDSRLGAKVSRVIAKYAEVLLAADPTPDDSDSDGSDSDEHTRAADKSGDEAEXXXXXXXXXXXXXXXXXXSPSA------SLQQPSRRPFRQSKVAARERMAHAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEDDGTEHGQAEAGDGRGGTVDXXXXXXXXXXXXXXX--GYESAVTKVSSPAREKRSSTRRKSSRAKASPLAEISNSPGRGRRLRA 1143
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1122.817.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FVL8_ECTSI1.350e-19990.17Cnd3 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5L8W1_9PHAE9.910e-19283.97Cnd3 domain-containing protein n=1 Tax=Ectocarpus ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 188..208
NoneNo IPR availablePANTHERPTHR14418:SF5CONDENSIN COMPLEX SUBUNIT 3coord: 21..437
IPR025977Nuclear condensin complex subunit 3, C-terminal domainPFAMPF12719Cnd3coord: 1..193
e-value: 5.2E-12
score: 45.6
IPR027165Condensin complex subunit 3PANTHERPTHR14418CONDENSIN COMPLEX SUBUNIT 3-RELATEDcoord: 21..437

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1122contigE-siliculosus-1a_F_contig1122:30695..36974 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1122.817.1mRNA_E-siliculosus-1a_F_contig1122.817.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig1122 30695..36974 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig1122.817.1 ID=prot_E-siliculosus-1a_F_contig1122.817.1|Name=mRNA_E-siliculosus-1a_F_contig1122.817.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=525bp
LQALSDLSLIFRSAVLGSTGDVLNMFADILKDRSANRGMTAVAAEAISRL
LFFELSHDPELLARLVVLYFEKGSAADPSAGPRGNEDGEEEDLEEDAKAV
GSSVRLSQILGVYFRSLPSAGPRVRDMLSESVRHVMEVLRSIAELNVVAE
KNNENDANKTVAMIEVPSQDVVKFVRELLMVQQEESALREAEAAEAAEES
SLAKKEVEVEGQEEKEDGKDMPEKAEAEKSSSSSGGTAGAAGGVDATGHV
ALCITEELWTLSGIDGVSELAASLAKVLTSLPLPEDDQVTLKRLRKNVDR
LESLGDSRLGAKVSRVIAKYAEVLLAADLTPDDSDSDDNGNSDGSDSDEH
TRTADKSRDEAEEEQKAPMRKKRSSNTSYSSSSASLQPPSRRPSRQSKVA
ARERMAHAEAEAVAAAAAAAAEEEDRDTSEDEDEEESDGEDDGTEHGQAE
AEDGRGETVDDDDDDNAVESEDDDEDDGYESSATKVSSPAREKRSSTRRR
SSRARASPLAEISNSPGRGRRLRA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR027165CND3
IPR025977Cnd3_C