mRNA_E-siliculosus-1a_F_contig1122.817.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1122.817.1
Unique NamemRNA_E-siliculosus-1a_F_contig1122.817.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1122.817.1 vs. uniprot
Match: D7FVL8_ECTSI (Cnd3 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVL8_ECTSI)

HSP 1 Score: 598 bits (1541), Expect = 1.350e-199
Identity = 477/529 (90.17%), Postives = 482/529 (91.12%), Query Frame = 1 
Query:    1 LQALSDLSLIFRSAVLGSTGDVLNMFADILKDRSANRGMTAVAAEAISRLLFFELSHDPELLARLVVLYFEKGSAADPSAGPRGNEDGXXXXXXXDAKAVGSSVRLSQILGVYFRSLPSAGPRVRDMLSESVRHVMEVLRSIAELNVVAEKNNENDANKTVAMIEVPSQDVVKFVRELLMVQQEESALREAEAAEAAEESSLAKKEVEVEGQEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVDATGHVALCITEELWTLSGIDGVSELAASLAKVLTSLPLPEDDQVTLKRLRKNVDRLESLGDSRLGAKVSRVIAKYAEVLLAADLTPDDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLQPPSRRPSRQSKVAARERMAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----EDDGTEHGQAEAEDGRGETVDXXXXXXXXXXXXXXXXXGYESSATKVSSPAREKRSSTRRRSSRARASPLAEISNSPGRGRRLRA 1572
            +QALSDLSLIFRSAVLGSTGDVLNMFADILKDRSANRGMTAVAAEAISRLLFFELSHDPELLARLVVLYFEKGSAADPSAG RG+EDG       DAKAVGSSVRLSQILGVYFRSLPSAGPRVRDMLSESVR+VM VLR IAELNV AEKNNENDANKTVA IEVP QDVVKFVRELLMVQQEESALREAEAAE   E SL KKEVE EGQ  XXXXXXXXXXXXXXXXXXXXXXXXXXXXGVDATGHVALCITEELWTLSGIDGVSELAASLAKVLTSLPLPEDDQVTLKRLRKNVDRLESLGDSRLGAKVSRVIAKYAEVL AADLTPDDS  XXXXXXXXXXXX              XXXXXXXXXXXXXXXXXXXXXX LQPPSRRPSRQSKVAARERMAH XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     EDDGTEHGQAEAEDGRGETVDXXXXXXXXXXXXXXXX  YES+ATKVSSPAREKRSSTRRRSSRA+ASPLAEISNSPGRGRRLRA
Sbjct:  677 MQALSDLSLIFRSAVLGSTGDVLNMFADILKDRSANRGMTAVAAEAISRLLFFELSHDPELLARLVVLYFEKGSAADPSAGSRGDEDGEEEDLEEDAKAVGSSVRLSQILGVYFRSLPSAGPRVRDMLSESVRYVMGVLRGIAELNVAAEKNNENDANKTVAKIEVPFQDVVKFVRELLMVQQEESALREAEAAE---EPSLTKKEVEEEGQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVDATGHVALCITEELWTLSGIDGVSELAASLAKVLTSLPLPEDDQVTLKRLRKNVDRLESLGDSRLGAKVSRVIAKYAEVLFAADLTPDDSDSXXXXXXXXXXXXEHTRAADKSGDEAEXXXXXXXXXXXXXXXXXXXXXXXLQPPSRRPSRQSKVAARERMAHAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEDDGTEHGQAEAEDGRGETVDXXXXXXXXXXXXXXXX--YESAATKVSSPAREKRSSTRRRSSRAKASPLAEISNSPGRGRRLRA 1200
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1122.817.1 vs. uniprot
Match: A0A6H5L8W1_9PHAE (Cnd3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8W1_9PHAE)

HSP 1 Score: 576 bits (1484), Expect = 9.910e-192
Identity = 440/524 (83.97%), Postives = 446/524 (85.11%), Query Frame = 1 
Query:    1 LQALSDLSLIFRSAVLGSTGDVLNMFADILKDRSANRGMTAVAAEAISRLLFFELSHDPELLARLVVLYFEKGSAADPSAGPRGNEDGXXXXXXXDAKAVGSSVRLSQILGVYFRSLPSAGPRVRDMLSESVRHVMEVLRSIAELNVVAEKNNENDANKTVAMIEVPSQDVVKFVRELLMVQQEESALREAEAAEAAEESSLAKKEVEVEGQEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVDATGHVALCITEELWTLSGIDGVSELAASLAKVLTSLPLPEDDQVTLKRLRKNVDRLESLGDSRLGAKVSRVIAKYAEVLLAADLTPDDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLQPPSRRPSRQSKVAARERMAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDDGTEHGQAEAEDGRGETVDXXXXXXXXXXXXXXXXXGYESSATKVSSPAREKRSSTRRRSSRARASPLAEISNSPGRGRRLRA 1572
            +QALSDLSLIFRSAVLGSTGDVLNMFADILKDRSANRGMTAVAAEAISRLLFFELSHDPELLARL+VLYFEKGSAADPS GPRG+EDG       DAKAVGSSVRLSQILGVYFRSLPSAGPRVRDMLSESVRHVM VLR IAELNV AEKNNENDANKTVAMIEVPSQDVVKFVRELLMVQQEESALREAEAAE                   XXXXXXXXXXXXXXXXXXXXXX      GVDATGHVALCITEELWTLSGIDGVSELAASLAKVLTSLPLPEDDQVTLKRLRKNVDRLESLGDSRLGAKVSRVIAKYAEVLLAAD TPDDS                      XXXXXXXXXXXXXXXXXX          SLQ PSRRP RQSKVAARERMAH XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX EDDGTEHGQAEA DGRG TVDXXXXXXXXXXXXXXX  GYES+ TKVSSPAREKRSSTRR+SSRA+ASPLAEISNSPGRGRRLRA
Sbjct:  628 MQALSDLSLIFRSAVLGSTGDVLNMFADILKDRSANRGMTAVAAEAISRLLFFELSHDPELLARLIVLYFEKGSAADPSVGPRGDEDGEEEGLEEDAKAVGSSVRLSQILGVYFRSLPSAGPRVRDMLSESVRHVMGVLRGIAELNVAAEKNNENDANKTVAMIEVPSQDVVKFVRELLMVQQEESALREAEAAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAGVAGGVDATGHVALCITEELWTLSGIDGVSELAASLAKVLTSLPLPEDDQVTLKRLRKNVDRLESLGDSRLGAKVSRVIAKYAEVLLAADPTPDDSDSDGSDSDEHTRAADKSGDEAEXXXXXXXXXXXXXXXXXXSPSA------SLQQPSRRPFRQSKVAARERMAHAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEDDGTEHGQAEAGDGRGGTVDXXXXXXXXXXXXXXX--GYESAVTKVSSPAREKRSSTRRKSSRAKASPLAEISNSPGRGRRLRA 1143
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1122.817.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FVL8_ECTSI1.350e-19990.17Cnd3 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5L8W1_9PHAE9.910e-19283.97Cnd3 domain-containing protein n=1 Tax=Ectocarpus ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1122contigE-siliculosus-1a_F_contig1122:30695..36974 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size1575
Model size1575
Exons9
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko03036
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.BD
EggNOG OGsCOG5218@1,KOG2025@2759
EggNOG free text desc.complex. Subunit
GOsGO:0000003,GO:0000070,GO:0000228,GO:0000278,GO:0000280,GO:0000793,GO:0000794,GO:0000796,GO:0000799,GO:0000819,GO:0003674,GO:0003682,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0006323,GO:0006996,GO:0007049,GO:0007059,GO:0007076,GO:0007127,GO:0007129,GO:0007130,GO:0008150,GO:0009892,GO:0009987,GO:0010032,GO:0010564,GO:0010605,GO:0010948,GO:0016043,GO:0019219,GO:0019222,GO:0022402,GO:0022414,GO:0022607,GO:0030261,GO:0031323,GO:0031324,GO:0031974,GO:0031981,GO:0032991,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044815,GO:0045132,GO:0045143,GO:0045786,GO:0045934,GO:0048285,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051276,GO:0051304,GO:0051307,GO:0051321,GO:0051445,GO:0051447,GO:0051726,GO:0060255,GO:0061982,GO:0065007,GO:0070013,GO:0070058,GO:0070192,GO:0070193,GO:0070550,GO:0071103,GO:0071840,GO:0080090,GO:0098813,GO:0140013,GO:0140014,GO:1903046,GO:1903047,GO:1903341,GO:1903342,GO:2000241,GO:2000242
KEGG Pathwayko04111,map04111
KEGG koko:K06678
Preferred nameYCG1
Seed eggNOG ortholog2880.D7FVL8
Seed ortholog evalue6.8e-170
Seed ortholog score604.0
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927630.4613664-CDS-E-siliculosus-1a_F_contig1122:30694..308371622927630.4613664-CDS-E-siliculosus-1a_F_contig1122:30694..30837Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1122 30695..30837 -
1696318617.5603635-CDS-E-siliculosus-1a_F_contig1122:30694..308371696318617.5603635-CDS-E-siliculosus-1a_F_contig1122:30694..30837Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1122 30695..30837 -
1622927630.4765053-CDS-E-siliculosus-1a_F_contig1122:31222..315411622927630.4765053-CDS-E-siliculosus-1a_F_contig1122:31222..31541Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1122 31223..31541 -
1696318617.5729842-CDS-E-siliculosus-1a_F_contig1122:31222..315411696318617.5729842-CDS-E-siliculosus-1a_F_contig1122:31222..31541Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1122 31223..31541 -
1622927630.4901812-CDS-E-siliculosus-1a_F_contig1122:32065..322121622927630.4901812-CDS-E-siliculosus-1a_F_contig1122:32065..32212Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1122 32066..32212 -
1696318617.5838866-CDS-E-siliculosus-1a_F_contig1122:32065..322121696318617.5838866-CDS-E-siliculosus-1a_F_contig1122:32065..32212Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1122 32066..32212 -
1622927630.5197017-CDS-E-siliculosus-1a_F_contig1122:32809..329111622927630.5197017-CDS-E-siliculosus-1a_F_contig1122:32809..32911Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1122 32810..32911 -
1696318617.594312-CDS-E-siliculosus-1a_F_contig1122:32809..329111696318617.594312-CDS-E-siliculosus-1a_F_contig1122:32809..32911Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1122 32810..32911 -
1622927630.5399477-CDS-E-siliculosus-1a_F_contig1122:33412..336041622927630.5399477-CDS-E-siliculosus-1a_F_contig1122:33412..33604Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1122 33413..33604 -
1696318617.6035783-CDS-E-siliculosus-1a_F_contig1122:33412..336041696318617.6035783-CDS-E-siliculosus-1a_F_contig1122:33412..33604Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1122 33413..33604 -
1622927630.55325-CDS-E-siliculosus-1a_F_contig1122:34272..344941622927630.55325-CDS-E-siliculosus-1a_F_contig1122:34272..34494Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1122 34273..34494 -
1696318617.611365-CDS-E-siliculosus-1a_F_contig1122:34272..344941696318617.611365-CDS-E-siliculosus-1a_F_contig1122:34272..34494Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1122 34273..34494 -
1622927630.5711186-CDS-E-siliculosus-1a_F_contig1122:35264..353901622927630.5711186-CDS-E-siliculosus-1a_F_contig1122:35264..35390Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1122 35265..35390 -
1696318617.6190884-CDS-E-siliculosus-1a_F_contig1122:35264..353901696318617.6190884-CDS-E-siliculosus-1a_F_contig1122:35264..35390Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1122 35265..35390 -
1622927630.5829628-CDS-E-siliculosus-1a_F_contig1122:35903..361161622927630.5829628-CDS-E-siliculosus-1a_F_contig1122:35903..36116Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1122 35904..36116 -
1696318617.6267292-CDS-E-siliculosus-1a_F_contig1122:35903..361161696318617.6267292-CDS-E-siliculosus-1a_F_contig1122:35903..36116Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1122 35904..36116 -
1622927630.5934308-CDS-E-siliculosus-1a_F_contig1122:36863..369741622927630.5934308-CDS-E-siliculosus-1a_F_contig1122:36863..36974Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1122 36864..36974 -
1696318617.6341143-CDS-E-siliculosus-1a_F_contig1122:36863..369741696318617.6341143-CDS-E-siliculosus-1a_F_contig1122:36863..36974Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1122 36864..36974 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1122.817.1prot_E-siliculosus-1a_F_contig1122.817.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1122 30695..36974 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1122.817.1

>prot_E-siliculosus-1a_F_contig1122.817.1 ID=prot_E-siliculosus-1a_F_contig1122.817.1|Name=mRNA_E-siliculosus-1a_F_contig1122.817.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=525bp
LQALSDLSLIFRSAVLGSTGDVLNMFADILKDRSANRGMTAVAAEAISRL
LFFELSHDPELLARLVVLYFEKGSAADPSAGPRGNEDGEEEDLEEDAKAV
GSSVRLSQILGVYFRSLPSAGPRVRDMLSESVRHVMEVLRSIAELNVVAE
KNNENDANKTVAMIEVPSQDVVKFVRELLMVQQEESALREAEAAEAAEES
SLAKKEVEVEGQEEKEDGKDMPEKAEAEKSSSSSGGTAGAAGGVDATGHV
ALCITEELWTLSGIDGVSELAASLAKVLTSLPLPEDDQVTLKRLRKNVDR
LESLGDSRLGAKVSRVIAKYAEVLLAADLTPDDSDSDDNGNSDGSDSDEH
TRTADKSRDEAEEEQKAPMRKKRSSNTSYSSSSASLQPPSRRPSRQSKVA
ARERMAHAEAEAVAAAAAAAAEEEDRDTSEDEDEEESDGEDDGTEHGQAE
AEDGRGETVDDDDDDNAVESEDDDEDDGYESSATKVSSPAREKRSSTRRR
SSRARASPLAEISNSPGRGRRLRA*
back to top

mRNA from alignment at E-siliculosus-1a_F_contig1122:30695..36974-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1122.817.1 ID=mRNA_E-siliculosus-1a_F_contig1122.817.1|Name=mRNA_E-siliculosus-1a_F_contig1122.817.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=6280bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1122:30695..36974- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TTACAGGCCCTGAGCGACCTGTCCCTGATCTTCAGGAGCGCTGTCCTCGG
ATCGACCGGTGACGTCTTGAACATGTTCGCGGACATTCTCAAGGACAGAT
CTGCGAATCGGGTAAGCGCTGCCTGAAGGAAAACCACAAACCCGGACGGT
AGAGAGCAGCCTACTGCTACCGTTGTTGTACAGTTAACACCCCACCTTAA
AGGAAGGCAAGTTTATAGATTGAGCGCTTGAAAACTCAAAACCTATATAG
CAGCCATTCGTAGCATTACCCTAGGAACTACTGTAAGAACACCAGCCTCC
GCTAATAGAGCTTCTTAAGTGCGGGCCTAACTGCATGTGGCGGAAGCAAG
TAATTTTTGAGCCTGTTGGCGCGTGAGAGTGGTCCTGAAACCCAAACCTC
ACGTATGTGTGATTGACGTGTTTGCGCGAATCAGCCGCATCCTGAGAACG
CGTTTGTCTGGTTTTTTTTTCCGTCTGTGGAGACGGCGGGTAGAATGCCG
CCGGCCCTTGTCAGTTTTCTTGAAACCCAGTTACCGTATTCCCGCCGGAG
ATGATCGGTCACACGCACTTGAACGATTTTGGAGGTTCCTCTGCGTCTGT
TTCCTCCCAGTATGGCATGTTGTACGTGAGCGTGTTGAAAGAACTGGCCC
TGGTGTTTTTGCGACGTGTTTGGGCCAACAGGGTGTTCTATCCGACGCTC
CCGCTTCGCTCGTCCAAGCATTTTACATATACTCAACCAATACCAACGGA
CCGGGCTTGAGTTACGCTTAACTCTAAACCTCTGCGTACGCGTTATATTA
TTACCCTTCTAAACACATCGTCGCAAAAATCAACCTCAATTTATTTTCTT
TCTACTAGGGCATGACAGCTGTGGCCGCCGAGGCTATCTCCCGTCTCCTG
TTCTTCGAGCTGTCCCACGACCCCGAGCTATTGGCGAGGCTTGTCGTCTT
GTATTTCGAGAAGGGTTCCGCCGCCGACCCCTCCGCGGGGCCCCGTGGGA
ACGAGGACGGGGAAGAGGAAGATTTGGAGGAGGACGCCAAGGCCGTTGGG
AGCAGCGTGCGACTCAGCCAGGTATCTCGTCACATGCGGGCGTGTTGCAA
TCGCTCTGTGCTGTGTGCCATTCAGATTGTTGATTGTTGTCTGTGTGATA
TGTTTCCTCTTCCCACACTTTTCCAGAACTTTTTCTTGGTTACTGGGTGG
TGTCGGCCACTATTGACTCGTTCACAGTTATCGTGTCTCCGCTTCCCCTG
CAAACCAGGATAACAGCCTGCCTCGGTTGCTCGCATAGCAAAGTCAGGGT
TTACCGGCGAACTTCCTCCCTCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGCCCTCCTTTTCTATG
CTTGCTCGTTTTTGTNNNNNNNNNNTGCGTGTCCCCCCTCCCCCCCAAAC
CCGGAAAACAACCCGCCCCGGTTGCCCCGAAAGCCAAAGCCGGGGTTTCC
GGGCCACCTCCCCCCCCCCCCCCCCCCCCCCCCCCCCATGTATGTACGCT
GATCATCTGCAATCCATCATGGTGACGTGCGTAGATTCTGGGTGTGTACT
TCCGGTCTCTGCCCTCCGCTGGTCCGAGGGTGCGCGACATGCTCTCCGAG
TCCGTGCGGCACGTGATGGAGGTCCTCAGGAGCATCGCCGAGCTCAACGT
TGTTGCCGAGGTACAGAACACTTCGATTTGTTGTTGTGATTTTCTGTTGC
AGACGACCTAACAGCGCAAATTGTTGTTGTCGCTGTTGTGATTTTCTACA
TATTGCGCACGAGCTAGCGTACTAGTGTTGCTGCTGTTCTGGTTTTCTCT
TGCTTACGACGAACTAACGAGACGGACGCACCGTACGTTTCATACGTAAG
ATACTACACCCCTGGACCGATTTTCAAAGCTCGAATACACTGCGGCCATA
GCAGCAGTGACGGTGCCGAAAATGCGCCGTTTCCCTGCCGTGGCATCCTC
TTGAGTTATATTGCGTGTGCAATCCGTGGTTTCCCGGCACCTTCCCTGCT
CTTGCTATTGCTACGTACTGGTTACGATAGAGGATATTCGGCTTGACCGT
AAGTATTCTCCAGGTAGTCACAACTCTATTCCGGCTGACTACAGCAGTAT
TTGGATTTTCTCGATATGGGAAATTCATCTCCGTGCAATCGCTTCCGGTT
GTGGCTCCTGCAGCAGTGATGAGGTGGAAAATATCGCGTTTTTTGTATAT
TTTCGGTCGATGAACGCGATGTGTAGCAGTCCAAACCCCGCCATACAACA
ACGGCGGCATTTGTTGGCTCCCTTTTCTGTTTTTTCACCAGCAAAACAAC
GAGGACGCCGGGAACGCGATACGTAATGGCAGTCCAAGCCCCACCATAAA
ACAACGGTGGCAATGATTGTCTCTTTTTGTCTTCTTTTTTTCTACGTTGT
TTTTGTCCCCTTTTTTATTTTTTTCACCAGAAAAACAACGAGAACGACGC
GAACAAGACCGTGGCGATGATCGAAGTCCCTTCCCAGGACGTGGTGAAGT
TTGTGAGGGAGCTCCTGATGGTGCAGCAGGAGGAGAGCGCCTTGCGCGAG
GCAGAGGCGGCGGAGGCGGCTGAGGAATCTTCGTTGGCGAAGAAAGAGGT
CGAAGTAGAGGGCCAGGAAGAAAAAGAAGACGGCAAAGACATGCCGGAAA
AGGTGTGCGACTCCCACATTTTTTTTGCTCGTACTTTTTACATTGCACTT
ATATAAAAATGTTTTGCTCTTTCAGCGTCAGTTTTGCCTCTGTCTTGTTT
GTTACGGCTAGGCTATGTTTGGCAAGCTCGTCGGTTGGGAGGGAGCGGGG
CAATTTTCGCGCAGCGAAAAAAGTTGTTGCTACAATATTTGTCCGATCTG
ATGTAACACGTGCGATGCCTTGTGCGGGTGTTGGCTCCAACGTTCCAACG
TTTCCTGATCCGACTGATGGAGAGTTGACATTGTGGTGTGTTACTGTCGT
TTCCTGTGATGATCTGCCCTCCCTCCCCCCCCTCAAAGTGAATCAACATC
ACGAAAGACATGGCAATCAAGACCGAACTCGAAAGGTTAGATGTGCCCTT
GCCAGGAGCAGAAACGGTGCTCCGTTTTAACTCTCACGCAACAAACATAC
CACGCAAGTGACACAACAGATATGTATATCTCCATTGGCTTACCTACGTA
CCTGCCAACCCTTATCCATGTGGCTTCCTACTACCAATAAACAGACGCTG
TACCTCCCCCCGGCCCAACACGTCTTAGATACCACCCTCGCCGGAACCCC
CCCCCACCCCCCACCCCCGTCTTAATGTAACCCTGACCATCACGGGGCCC
CATCCATCGATTCTTCCAAGGCCGAGGCTGAGAAGAGCAGTAGCAGCAGC
GGGGGCACGGCAGGCGCGGCTGGAGGAGTGGATGCGACTGGGCACGTCGC
GCTCTGCATCACCGAAGAGCTCTGGACTCTGAGCGGCATCGACGGCGTGT
CCGAGCTCGCTGCGTCGTTGGCCAAAGTGCTCACGTCTCTGCCGCTTCCG
GAAGACGACCAGGTGTGCTTCGATATCCTCTGTAGCGCGCTGATGGTTGT
GTTTTGGGGCGCGTTTTTTGTTCTGCCGCCAGTGTATGTGACGTCTTTGT
GGGGCTAAGTGGGGGCTATGGACGAGATCGAACATCCGTTCTTGTATTAT
AGGCACGTTGAGGACAGCGGCAATCTGGTCATAGAGGGGTGATGTTCACA
CATGTTTCATTTGTCTATGGATGTCCTGAAGAGGCGCGCGCGTAGGCTAA
GAAAGTCGAGAGTAGCCCGTGTGAAGACGCATCAAGGAGGTTTTATGAAG
ACATACACGATTAATTTACCAGCAGTTTTCTGACCCTTCCCTACCCCCTC
ACAAATGCCGAGGAGCAAGGTAATTGGATTGGAGCAGCACGTTCACCGGA
TGGCGCGACCAAGAGTCAACCTAAGAAATCAAGCGAAGACTGAGTGCCCC
CCCCCCCTCAATTTCCACCCTTCCCCCCCGCTGCCCGGACGTGGTCTTCC
CGATGTCCCGTAGGTGACCCTGAAGCGCCTACGCAAGAACGTGGACAGGC
TGGAGTCTCTAGGCGATAGCCGCCTGGGCGCCAAGGTTTCGAGGGTCATT
GCCAAGTATGCCGAGGTGCGTACTCTGACAATACTTACGGCAGTGTCTAC
GGGGGGCGGTTGCTTTGGAGAAAGTGCGGTTCCCCTGTGGTTAGGAAAAC
CGCCGCAGGGCTTGAGTACGCACGGGGTGTGCACGAAGCACTTGGCTGGT
GCTCTGCGCGGGGGTACATCTGTACAACGTAGGGAGCTACGATTCGCGTC
GCATATCTCAGGGAGCGCTTGTGCAGCGCCTTCGTAGCGCCTTCTGTTGC
AGCGAGGCAACCAGCTCCTTCCCTTCGGGTGGGGGTACCATGCTTCTCTG
TGGCTGGCTGCCGCATATGTTGTGCGTTCGGATCATATTGCAGTGTCGGT
AGGCTTGACGACCGCAGGGCAAACGCTAGAACTGCGACAGAGATCCGCAC
GTTTTGCCACTGGTGTTGTAGTTTGCCTCAAACCAAGGCGGCGAGCGGAG
TGTGACACTCTGTATTTTTTCCTGTTTGTGATTTGTTGTTGTTGTTGTTG
TTGTTGTAGTTGTCTTCTCGTTAGAAACGTTTCCGATCTCTGGTGTGTGA
TGGAGAACTGACGACGACGTTTTGTGCTTTTCTGTTTGTGGACTGGTGTG
TGATGGGAGAAGGTCCTGTTGGCCGCCGACCTCACCCCAGACGATAGCGA
CAGCGACGACAACGGCAACAGCGATGGCAGCGACAGCGACGAGCACACAC
GCACCGCAGACAAGTCCCGGGACGAAGCGGAGGAGGAACAGAAGGCCCCA
ATGCGCAAGGTTCGTACTTGTGCCGTTGTGGTTGGTGGCGATGCTGTTTA
CGTTGTTGTAGACGGTGGGAATGGTGGTGTCCTCATCGGCCCCCCGCTTT
CATGTTTTCTACTTCACCGCAACTCGTGTTTTCTATTTCACCACACAAAA
TGATTTACTTTCGGTGCTTCCCGTCCGAGTGTTAGTTTTAATCGACGCAA
ACGAAGGAGAAGCAAAGTTCTTTTGCACCCGATCTCGTCCAGTTGTCTTC
CTGTTGTCTTTGTATTTTTCTCTGCCATCTCCGTGTTTTTTATGTTTGTT
TTGCGATTTGTTTTTATTCTGCGTGTATGGTACATCGTACGCACAACAGT
GTTGAGTTCTCGCGTGCTAAATAGTTTTTGCCCTTGCCCAAGTTCTTATA
GCAACCTGTCCCCGATCTCCGAGAAACCTACCGATGTTTGATCGATATCG
ATGTTTTTCGGAGCTCCTCCCTCTCTCCGTTCTTTCAACCCCCTCCTCCG
GTTGCATTGTTGCTGTTTCCGTGTCTCCCGCAGAAGCGGAGTAGCAACAC
GTCCTATTCTTCTTCGTCCGCCAGCCTGCAGCCGCCGTCCCGCCGACCTT
CCCGCCAGAGCAAGGTGGCCGCGCGCGAGCGCATGGCGCACGCGGAAGCG
GAGGCGGTGGCGGCCGCGGCTGCCGCTGCTGCTGAGGAGGAGGATCGAGA
CACTTCGGAAGACGAGGACGAGGAGGAAAGCGACGGCGAAGATGATGGCA
CGGAGCATGGGCAAGCGGAGGCCGAAGATGGCCGTGGTGAAACCGTCGAC
GATGACGATGACGACAACGCCGTCGAGTCGGAGGACGACGACGAGGATGA
TGGTAAGCAGCATACGGGATGATGTTAGGAAGTGGGTCGTCATCTCGTTT
TCTGGTTTGGTCGGTCTCGTAAGCTTCAGATTTCGCAAGACCGGATCTGT
TTTTTTTTTTGGTTCCCGCCGACGCTTGTGGCGTGGCGGTCTTTTTGTAG
TGTTTTTGCTCTTCCCTTTTCCGCCCGTCTCTATCCGTTGGGTTGCAGCG
TCCGAAACCACCCCCCCTCCCCTTGGCTTCATACCTAGGTATGTAGAGCA
TTGTTGCTATTCGCGTCACCCCCACGTCGGCAATGTAGTCGCTTCTGACG
ACCCCTCCCATCTCCCTTCCTCGGTTGGTTGTGTAAACGAATCTTAACCG
CGTGCGATTGAACACGCTGATGCTGCTGCTGTCCCAGGCTACGAGAGCTC
CGCCACCAAGGTGTCATCGCCCGCGAGGGAAAAGCGCAGCAGCACCCGAC
GCAGGTCGAGCAGGGCGAGGGCGAGCCCGCTGGCCGAGATCAGCAACAGC
CCCGGTCGGGGCAGGAGGCTGCGTGCCTGA
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1122:30695..36974-

>mRNA_E-siliculosus-1a_F_contig1122.817.1 ID=mRNA_E-siliculosus-1a_F_contig1122.817.1|Name=mRNA_E-siliculosus-1a_F_contig1122.817.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=3150bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1122:30695..36974- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TTACAGGCCCTGAGCGACCTGTCCCTGATCTTCAGGAGCGCTGTCCTCGG
ATCGACCGGTGACGTCTTGAACATGTTCGCGGACATTCTCAAGGACAGAT
CTGCGAATCGGTTACAGGCCCTGAGCGACCTGTCCCTGATCTTCAGGAGC
GCTGTCCTCGGATCGACCGGTGACGTCTTGAACATGTTCGCGGACATTCT
CAAGGACAGATCTGCGAATCGGGGCATGACAGCTGTGGCCGCCGAGGCTA
TCTCCCGTCTCCTGTTCTTCGAGCTGTCCCACGACCCCGAGCTATTGGCG
AGGCTTGTCGTCTTGTATTTCGAGAAGGGTTCCGCCGCCGACCCCTCCGC
GGGGCCCCGTGGGAACGAGGACGGGGAAGAGGAAGATTTGGAGGAGGACG
CCAAGGCCGTTGGGAGCAGCGTGCGACTCAGCCAGGGCATGACAGCTGTG
GCCGCCGAGGCTATCTCCCGTCTCCTGTTCTTCGAGCTGTCCCACGACCC
CGAGCTATTGGCGAGGCTTGTCGTCTTGTATTTCGAGAAGGGTTCCGCCG
CCGACCCCTCCGCGGGGCCCCGTGGGAACGAGGACGGGGAAGAGGAAGAT
TTGGAGGAGGACGCCAAGGCCGTTGGGAGCAGCGTGCGACTCAGCCAGAT
TCTGGGTGTGTACTTCCGGTCTCTGCCCTCCGCTGGTCCGAGGGTGCGCG
ACATGCTCTCCGAGTCCGTGCGGCACGTGATGGAGGTCCTCAGGAGCATC
GCCGAGCTCAACGTTGTTGCCGAGATTCTGGGTGTGTACTTCCGGTCTCT
GCCCTCCGCTGGTCCGAGGGTGCGCGACATGCTCTCCGAGTCCGTGCGGC
ACGTGATGGAGGTCCTCAGGAGCATCGCCGAGCTCAACGTTGTTGCCGAG
AAAAACAACGAGAACGACGCGAACAAGACCGTGGCGATGATCGAAGTCCC
TTCCCAGGACGTGGTGAAGTTTGTGAGGGAGCTCCTGATGGTGCAGCAGG
AGGAGAGCGCCTTGCGCGAGGCAGAGGCGGCGGAGGCGGCTGAGGAATCT
TCGTTGGCGAAGAAAGAGGTCGAAGTAGAGGGCCAGGAAGAAAAAGAAGA
CGGCAAAGACATGCCGGAAAAGAAAAACAACGAGAACGACGCGAACAAGA
CCGTGGCGATGATCGAAGTCCCTTCCCAGGACGTGGTGAAGTTTGTGAGG
GAGCTCCTGATGGTGCAGCAGGAGGAGAGCGCCTTGCGCGAGGCAGAGGC
GGCGGAGGCGGCTGAGGAATCTTCGTTGGCGAAGAAAGAGGTCGAAGTAG
AGGGCCAGGAAGAAAAAGAAGACGGCAAAGACATGCCGGAAAAGGCCGAG
GCTGAGAAGAGCAGTAGCAGCAGCGGGGGCACGGCAGGCGCGGCTGGAGG
AGTGGATGCGACTGGGCACGTCGCGCTCTGCATCACCGAAGAGCTCTGGA
CTCTGAGCGGCATCGACGGCGTGTCCGAGCTCGCTGCGTCGTTGGCCAAA
GTGCTCACGTCTCTGCCGCTTCCGGAAGACGACCAGGCCGAGGCTGAGAA
GAGCAGTAGCAGCAGCGGGGGCACGGCAGGCGCGGCTGGAGGAGTGGATG
CGACTGGGCACGTCGCGCTCTGCATCACCGAAGAGCTCTGGACTCTGAGC
GGCATCGACGGCGTGTCCGAGCTCGCTGCGTCGTTGGCCAAAGTGCTCAC
GTCTCTGCCGCTTCCGGAAGACGACCAGGTGACCCTGAAGCGCCTACGCA
AGAACGTGGACAGGCTGGAGTCTCTAGGCGATAGCCGCCTGGGCGCCAAG
GTTTCGAGGGTCATTGCCAAGTATGCCGAGGTGACCCTGAAGCGCCTACG
CAAGAACGTGGACAGGCTGGAGTCTCTAGGCGATAGCCGCCTGGGCGCCA
AGGTTTCGAGGGTCATTGCCAAGTATGCCGAGGTCCTGTTGGCCGCCGAC
CTCACCCCAGACGATAGCGACAGCGACGACAACGGCAACAGCGATGGCAG
CGACAGCGACGAGCACACACGCACCGCAGACAAGTCCCGGGACGAAGCGG
AGGAGGAACAGAAGGCCCCAATGCGCAAGGTCCTGTTGGCCGCCGACCTC
ACCCCAGACGATAGCGACAGCGACGACAACGGCAACAGCGATGGCAGCGA
CAGCGACGAGCACACACGCACCGCAGACAAGTCCCGGGACGAAGCGGAGG
AGGAACAGAAGGCCCCAATGCGCAAGAAGCGGAGTAGCAACACGTCCTAT
TCTTCTTCGTCCGCCAGCCTGCAGCCGCCGTCCCGCCGACCTTCCCGCCA
GAGCAAGGTGGCCGCGCGCGAGCGCATGGCGCACGCGGAAGCGGAGGCGG
TGGCGGCCGCGGCTGCCGCTGCTGCTGAGGAGGAGGATCGAGACACTTCG
GAAGACGAGGACGAGGAGGAAAGCGACGGCGAAGATGATGGCACGGAGCA
TGGGCAAGCGGAGGCCGAAGATGGCCGTGGTGAAACCGTCGACGATGACG
ATGACGACAACGCCGTCGAGTCGGAGGACGACGACGAGGATGATGAAGCG
GAGTAGCAACACGTCCTATTCTTCTTCGTCCGCCAGCCTGCAGCCGCCGT
CCCGCCGACCTTCCCGCCAGAGCAAGGTGGCCGCGCGCGAGCGCATGGCG
CACGCGGAAGCGGAGGCGGTGGCGGCCGCGGCTGCCGCTGCTGCTGAGGA
GGAGGATCGAGACACTTCGGAAGACGAGGACGAGGAGGAAAGCGACGGCG
AAGATGATGGCACGGAGCATGGGCAAGCGGAGGCCGAAGATGGCCGTGGT
GAAACCGTCGACGATGACGATGACGACAACGCCGTCGAGTCGGAGGACGA
CGACGAGGATGATGGCTACGAGAGCTCCGCCACCAAGGTGTCATCGCCCG
CGAGGGAAAAGCGCAGCAGCACCCGACGCAGGTCGAGCAGGGCGAGGGCG
AGCCCGCTGGCCGAGATCAGCAACAGCCCCGGTCGGGGCAGGAGGCTGCG
TGCCTGAGCTACGAGAGCTCCGCCACCAAGGTGTCATCGCCCGCGAGGGA
AAAGCGCAGCAGCACCCGACGCAGGTCGAGCAGGGCGAGGGCGAGCCCGC
TGGCCGAGATCAGCAACAGCCCCGGTCGGGGCAGGAGGCTGCGTGCCTGA
back to top