prot_E-siliculosus-1a_F_contig1116.778.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig1116.778.1
Unique Nameprot_E-siliculosus-1a_F_contig1116.778.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length105
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1116.778.1 vs. uniprot
Match: D8LHF9_ECTSI (Neurofilament triplet L protein, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHF9_ECTSI)

HSP 1 Score: 177 bits (449), Expect = 8.120e-51
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0 
Query:   11 DPSSSKDVFSKLDNASVTKILYANIMSTEPDTSPRNVRVTPTKSGDAGIEKRIKMKILLGPEYVSDEEEPDSEEESEGEQEDARDTFVDRTTVKK 105
            DPSSSKDVFSKLDNASVTKILYANIMSTEPDTSPRNVRVTPTKSGDAGIEKRIKMKILLGPEYVSDEEEPDSEEESEGEQEDARDTFVDRTTVKK
Sbjct:  450 DPSSSKDVFSKLDNASVTKILYANIMSTEPDTSPRNVRVTPTKSGDAGIEKRIKMKILLGPEYVSDEEEPDSEEESEGEQEDARDTFVDRTTVKK 544
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1116.778.1 vs. uniprot
Match: A0A6H5KWI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWI0_9PHAE)

HSP 1 Score: 157 bits (396), Expect = 1.780e-46
Identity = 86/93 (92.47%), Postives = 87/93 (93.55%), Query Frame = 0 
Query:   11 DPSSSKDVFSKLDNASVTKILYANIMSTEPDTSPRNVRVTPTKSGDAGIEKRIKMKILLGPEYVSDEEEPDSEEESEGEQEDARDTFVDRTTV 103
            DPS SKDV   LDNASVTKILYANIMS EPDTSPRNVRVTPTKSGDAGI+KRIKMKILLGPEYVSDEEEPDSEEESEGEQEDARDTFVDRTT 
Sbjct:   79 DPSPSKDV---LDNASVTKILYANIMSAEPDTSPRNVRVTPTKSGDAGIDKRIKMKILLGPEYVSDEEEPDSEEESEGEQEDARDTFVDRTTA 168
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1116.778.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LHF9_ECTSI8.120e-51100.00Neurofilament triplet L protein, putative n=1 Tax=... [more]
A0A6H5KWI0_9PHAE1.780e-4692.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1116contigE-siliculosus-1a_F_contig1116:14947..15898 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1116.778.1mRNA_E-siliculosus-1a_F_contig1116.778.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig1116 14947..15898 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig1116.778.1 ID=prot_E-siliculosus-1a_F_contig1116.778.1|Name=mRNA_E-siliculosus-1a_F_contig1116.778.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=105bp
GVGGSGGGGGDPSSSKDVFSKLDNASVTKILYANIMSTEPDTSPRNVRVT
PTKSGDAGIEKRIKMKILLGPEYVSDEEEPDSEEESEGEQEDARDTFVDR
TTVKK
back to top