mRNA_E-siliculosus-1a_F_contig1116.778.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1116.778.1
Unique NamemRNA_E-siliculosus-1a_F_contig1116.778.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1116.778.1 vs. uniprot
Match: D8LHF9_ECTSI (Neurofilament triplet L protein, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHF9_ECTSI)

HSP 1 Score: 177 bits (449), Expect = 8.120e-51
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 1 
Query:   31 DPSSSKDVFSKLDNASVTKILYANIMSTEPDTSPRNVRVTPTKSGDAGIEKRIKMKILLGPEYVSDEEEPDSEEESEGEQEDARDTFVDRTTVKK 315
            DPSSSKDVFSKLDNASVTKILYANIMSTEPDTSPRNVRVTPTKSGDAGIEKRIKMKILLGPEYVSDEEEPDSEEESEGEQEDARDTFVDRTTVKK
Sbjct:  450 DPSSSKDVFSKLDNASVTKILYANIMSTEPDTSPRNVRVTPTKSGDAGIEKRIKMKILLGPEYVSDEEEPDSEEESEGEQEDARDTFVDRTTVKK 544
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BLAST of mRNA_E-siliculosus-1a_F_contig1116.778.1 vs. uniprot
Match: A0A6H5KWI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWI0_9PHAE)

HSP 1 Score: 157 bits (396), Expect = 1.780e-46
Identity = 86/93 (92.47%), Postives = 87/93 (93.55%), Query Frame = 1 
Query:   31 DPSSSKDVFSKLDNASVTKILYANIMSTEPDTSPRNVRVTPTKSGDAGIEKRIKMKILLGPEYVSDEEEPDSEEESEGEQEDARDTFVDRTTV 309
            DPS SKDV   LDNASVTKILYANIMS EPDTSPRNVRVTPTKSGDAGI+KRIKMKILLGPEYVSDEEEPDSEEESEGEQEDARDTFVDRTT 
Sbjct:   79 DPSPSKDV---LDNASVTKILYANIMSAEPDTSPRNVRVTPTKSGDAGIDKRIKMKILLGPEYVSDEEEPDSEEESEGEQEDARDTFVDRTTA 168
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1116.778.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LHF9_ECTSI8.120e-51100.00Neurofilament triplet L protein, putative n=1 Tax=... [more]
A0A6H5KWI0_9PHAE1.780e-4692.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1116contigE-siliculosus-1a_F_contig1116:14947..15898 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size315
Model size315
Exons3
Hectar predicted targeting categoryother localisation
Ec32 orthologEc-11_004230.1
Ec32 ortholog descriptionNeurofilament triplet L protein, putative
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1116.778.1prot_E-siliculosus-1a_F_contig1116.778.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1116 14947..15898 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927621.3545787-CDS-E-siliculosus-1a_F_contig1116:14946..150001622927621.3545787-CDS-E-siliculosus-1a_F_contig1116:14946..15000Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1116 14947..15000 +
1696318614.0150554-CDS-E-siliculosus-1a_F_contig1116:14946..150001696318614.0150554-CDS-E-siliculosus-1a_F_contig1116:14946..15000Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1116 14947..15000 +
1622927621.366813-CDS-E-siliculosus-1a_F_contig1116:15285..154141622927621.366813-CDS-E-siliculosus-1a_F_contig1116:15285..15414Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1116 15286..15414 +
1696318614.0255425-CDS-E-siliculosus-1a_F_contig1116:15285..154141696318614.0255425-CDS-E-siliculosus-1a_F_contig1116:15285..15414Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1116 15286..15414 +
1622927621.3797863-CDS-E-siliculosus-1a_F_contig1116:15766..158981622927621.3797863-CDS-E-siliculosus-1a_F_contig1116:15766..15898Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1116 15767..15898 +
1696318614.0348625-CDS-E-siliculosus-1a_F_contig1116:15766..158981696318614.0348625-CDS-E-siliculosus-1a_F_contig1116:15766..15898Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1116 15767..15898 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1116.778.1

>prot_E-siliculosus-1a_F_contig1116.778.1 ID=prot_E-siliculosus-1a_F_contig1116.778.1|Name=mRNA_E-siliculosus-1a_F_contig1116.778.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=105bp
GVGGSGGGGGDPSSSKDVFSKLDNASVTKILYANIMSTEPDTSPRNVRVT
PTKSGDAGIEKRIKMKILLGPEYVSDEEEPDSEEESEGEQEDARDTFVDR
TTVKK
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mRNA from alignment at E-siliculosus-1a_F_contig1116:14947..15898+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1116.778.1 ID=mRNA_E-siliculosus-1a_F_contig1116.778.1|Name=mRNA_E-siliculosus-1a_F_contig1116.778.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=952bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1116:14947..15898+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGAGTCGGGGGCTCGGGCGGGGGAGGCGGAGACCCTTCGTCTTCCAAGGA
TGTGGTACGTGTTGTGTAAATAATCAAGCAGAACGAAGTTGGTTGTGGCG
CGAAAGCGCACACGGCAGCAGCGGGCCGCAGTAGACACGAAATATTGAAG
CACGGAGAAGTTCGACGAAAAGTACCACGTAGGTCCTACCTTGTCTTTAC
TCCGTGGTGGCTGCTTGGTCCCCGTCCGCATCGCGCTCAACTCTCATAGA
TAGTTTCCGCCTTTGCCACCCACCTCTTCCCTCTATATCTCGGTGTGCCC
CCCGATCTCTTTGGATTGTTGTCGCGCTGCCTGCGGAAGTTCTCTAAGCT
GGACAATGCCAGCGTCACAAAAATCCTGTATGCGAACATCATGAGCACGG
AGCCGGACACCTCACCGAGAAACGTGCGGGTGACGCCGACTAAGAGCGGC
GACGCGGGTATCGAAAAGGCAAGTCGAGAACACGACGACAAGGGTTTCCG
TTTCCGGTTCCCGTATACTATGTTTTTTGGTTAGAAATTTTGTGAACTAG
TCCGTTTGTGTTGGATATCCGAGATGCTCTACTTGTCATCACAATCGTTA
CACTTGCACACGCAGCAGCACACCACTTTAACCGTGCAGGGTAAGAAGTG
GTTTTTCTGGTTTGCACCCTGATCCAATACGAGTTGCTCACCCGTACACC
CATATATTTTCATGATCCACCACCTGCCCGGAGACTGGTATTGTACTTGT
TCTCGTTCTCATGACACCATCGGTGTGATCAGCGAAAACAATGACGTCAC
CAACAACAACTCGCCCGCAGAGGATCAAGATGAAGATCCTGCTGGGGCCC
GAGTACGTCTCGGACGAAGAGGAGCCCGATTCCGAGGAGGAAAGCGAGGG
AGAGCAGGAGGACGCGCGGGACACTTTCGTCGATCGGACAACGGTAAAGA
AG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1116:14947..15898+

>mRNA_E-siliculosus-1a_F_contig1116.778.1 ID=mRNA_E-siliculosus-1a_F_contig1116.778.1|Name=mRNA_E-siliculosus-1a_F_contig1116.778.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=630bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1116:14947..15898+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGAGTCGGGGGCTCGGGCGGGGGAGGCGGAGACCCTTCGTCTTCCAAGGA
TGTGGGAGTCGGGGGCTCGGGCGGGGGAGGCGGAGACCCTTCGTCTTCCA
AGGATGTGTTCTCTAAGCTGGACAATGCCAGCGTCACAAAAATCCTGTAT
GCGAACATCATGAGCACGGAGCCGGACACCTCACCGAGAAACGTGCGGGT
GACGCCGACTAAGAGCGGCGACGCGGGTATCGAAAAGTTCTCTAAGCTGG
ACAATGCCAGCGTCACAAAAATCCTGTATGCGAACATCATGAGCACGGAG
CCGGACACCTCACCGAGAAACGTGCGGGTGACGCCGACTAAGAGCGGCGA
CGCGGGTATCGAAAAGAGGATCAAGATGAAGATCCTGCTGGGGCCCGAGT
ACGTCTCGGACGAAGAGGAGCCCGATTCCGAGGAGGAAAGCGAGGGAGAG
CAGGAGGACGCGCGGGACACTTTCGTCGATCGGACAACGGTAAAGAAGAG
GATCAAGATGAAGATCCTGCTGGGGCCCGAGTACGTCTCGGACGAAGAGG
AGCCCGATTCCGAGGAGGAAAGCGAGGGAGAGCAGGAGGACGCGCGGGAC
ACTTTCGTCGATCGGACAACGGTAAAGAAG
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