prot_E-siliculosus-1a_F_contig11154.776.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig11154.776.1
Unique Nameprot_E-siliculosus-1a_F_contig11154.776.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length63
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig11154.776.1 vs. uniprot
Match: D8LHD8_ECTSI (Eukaryotic translation initiation factor 2B beta subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHD8_ECTSI)

HSP 1 Score: 112 bits (279), Expect = 1.310e-27
Identity = 53/56 (94.64%), Postives = 54/56 (96.43%), Query Frame = 0
Query:    7 RGPQVLNPAYDYIPPNLVDLYITNMGGLQPSYIYRLLAEYYHRDDLIISPSDEQAS 62
            R  +VLNPAYDYIPPNLVDLYITNMGGLQPSYIYRLLAEYYHRDDLIISPSDEQAS
Sbjct:  419 RNVEVLNPAYDYIPPNLVDLYITNMGGLQPSYIYRLLAEYYHRDDLIISPSDEQAS 474          
BLAST of mRNA_E-siliculosus-1a_F_contig11154.776.1 vs. uniprot
Match: A0A6H5KHV2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHV2_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 8.060e-27
Identity = 49/54 (90.74%), Postives = 51/54 (94.44%), Query Frame = 0
Query:    3 CPVSRGPQVLNPAYDYIPPNLVDLYITNMGGLQPSYIYRLLAEYYHRDDLIISP 56
            C V+R  QVLNPAYDYIPPNLVDLYITNMGGLQPSYIYRLLAEYYHRD+LIISP
Sbjct:   25 CRVAR--QVLNPAYDYIPPNLVDLYITNMGGLQPSYIYRLLAEYYHRDELIISP 76          
BLAST of mRNA_E-siliculosus-1a_F_contig11154.776.1 vs. uniprot
Match: A0A6H5JGR9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGR9_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 4.670e-26
Identity = 49/54 (90.74%), Postives = 50/54 (92.59%), Query Frame = 0
Query:    3 CPVSRGPQVLNPAYDYIPPNLVDLYITNMGGLQPSYIYRLLAEYYHRDDLIISP 56
            C V+R  QVLNPAYD IPPNLVDLYITNMGGLQPSYIYRLLAEYYHRDDLIISP
Sbjct:   25 CRVAR--QVLNPAYDCIPPNLVDLYITNMGGLQPSYIYRLLAEYYHRDDLIISP 76          
BLAST of mRNA_E-siliculosus-1a_F_contig11154.776.1 vs. uniprot
Match: A0A836CBW3_9STRA (Eukaryotic translation initiation factor 2B beta subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBW3_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 1.600e-19
Identity = 40/55 (72.73%), Postives = 47/55 (85.45%), Query Frame = 0
Query:    5 VSRGPQVLNPAYDYIPPNLVDLYITNMGGLQPSYIYRLLAEYYHRDDLIISPSDE 59
            ++   +VLNPAYDYIPP LVDLY+TN+GG QPSYIYRLLAEYYHRDD I++P  E
Sbjct:  342 LAESIEVLNPAYDYIPPELVDLYMTNIGGHQPSYIYRLLAEYYHRDDYILAPEFE 396          
BLAST of mRNA_E-siliculosus-1a_F_contig11154.776.1 vs. uniprot
Match: A0A7S3XZZ5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XZZ5_HETAK)

HSP 1 Score: 85.1 bits (209), Expect = 1.060e-18
Identity = 37/49 (75.51%), Postives = 43/49 (87.76%), Query Frame = 0
Query:   10 QVLNPAYDYIPPNLVDLYITNMGGLQPSYIYRLLAEYYHRDDLIISPSD 58
            +VLNPAYDYIPP L+DLYITNMGG QPSYIYRLLAEYYH +D ++S  +
Sbjct:  194 EVLNPAYDYIPPELIDLYITNMGGHQPSYIYRLLAEYYHHEDSVLSAQE 242          
BLAST of mRNA_E-siliculosus-1a_F_contig11154.776.1 vs. uniprot
Match: B8C5F6_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C5F6_THAPS)

HSP 1 Score: 77.8 bits (190), Expect = 2.910e-15
Identity = 33/48 (68.75%), Postives = 39/48 (81.25%), Query Frame = 0
Query:    4 PVSRGPQVLNPAYDYIPPNLVDLYITNMGGLQPSYIYRLLAEYYHRDD 51
            PV    + +NP +DYIPP L+DLY+TN+GG QPSYIYRLLAEYYH DD
Sbjct:  429 PVLSEVEFVNPVHDYIPPQLIDLYVTNIGGFQPSYIYRLLAEYYHSDD 476          
BLAST of mRNA_E-siliculosus-1a_F_contig11154.776.1 vs. uniprot
Match: A0A7S2DRQ5_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DRQ5_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 2.280e-14
Identity = 30/42 (71.43%), Postives = 36/42 (85.71%), Query Frame = 0
Query:   10 QVLNPAYDYIPPNLVDLYITNMGGLQPSYIYRLLAEYYHRDD 51
            +VLNPAYD++PP L+ LY+TN GG QPSYIYRLLAE+YH  D
Sbjct:   91 EVLNPAYDFVPPELIALYVTNNGGYQPSYIYRLLAEFYHPSD 132          
BLAST of mRNA_E-siliculosus-1a_F_contig11154.776.1 vs. uniprot
Match: A0A7S2XMS8_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XMS8_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 6.030e-14
Identity = 29/42 (69.05%), Postives = 37/42 (88.10%), Query Frame = 0
Query:   10 QVLNPAYDYIPPNLVDLYITNMGGLQPSYIYRLLAEYYHRDD 51
            + +NP +DYIPP L++LY+TN+GG QPSY+YRLLAEYYH DD
Sbjct:  209 EFVNPIHDYIPPQLINLYVTNIGGFQPSYLYRLLAEYYHSDD 250          
BLAST of mRNA_E-siliculosus-1a_F_contig11154.776.1 vs. uniprot
Match: A0A0L0G6J3_9EUKA (Uncharacterized protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0G6J3_9EUKA)

HSP 1 Score: 71.6 bits (174), Expect = 3.710e-13
Identity = 29/50 (58.00%), Postives = 37/50 (74.00%), Query Frame = 0
Query:    5 VSRGPQVLNPAYDYIPPNLVDLYITNMGGLQPSYIYRLLAEYYHRDDLII 54
            +    Q+  P YDY+PPNL+ LY+TN GG  P+YIYRLL+EYYH DD I+
Sbjct:  318 IHHSGQIQTPLYDYVPPNLISLYVTNSGGHAPTYIYRLLSEYYHPDDQIL 367          
BLAST of mRNA_E-siliculosus-1a_F_contig11154.776.1 vs. uniprot
Match: A0A7S2GLW7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GLW7_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 3.790e-13
Identity = 30/42 (71.43%), Postives = 36/42 (85.71%), Query Frame = 0
Query:   10 QVLNPAYDYIPPNLVDLYITNMGGLQPSYIYRLLAEYYHRDD 51
            +VLNPAYD++PP L+ LY+TN GG QPSYIYRLLAE+YH  D
Sbjct:  323 EVLNPAYDFVPPELIALYVTNNGGYQPSYIYRLLAEFYHPSD 364          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig11154.776.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHD8_ECTSI1.310e-2794.64Eukaryotic translation initiation factor 2B beta s... [more]
A0A6H5KHV2_9PHAE8.060e-2790.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JGR9_9PHAE4.670e-2690.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CBW3_9STRA1.600e-1972.73Eukaryotic translation initiation factor 2B beta s... [more]
A0A7S3XZZ5_HETAK1.060e-1875.51Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
B8C5F6_THAPS2.910e-1568.75Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A7S2DRQ5_9STRA2.280e-1471.43Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2XMS8_9STRA6.030e-1469.05Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A0L0G6J3_9EUKA3.710e-1358.00Uncharacterized protein n=1 Tax=Sphaeroforma arcti... [more]
A0A7S2GLW7_9STRA3.790e-1371.43Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000649Initiation factor 2B-relatedPFAMPF01008IF-2Bcoord: 10..36
e-value: 1.1E-6
score: 28.1
IPR042529Initiation factor 2B-like, C-terminalGENE3D3.40.50.10470coord: 4..59
e-value: 1.6E-14
score: 55.7
NoneNo IPR availablePANTHERPTHR45859FAMILY NOT NAMEDcoord: 10..53
NoneNo IPR availablePANTHERPTHR45859:SF1TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT BETAcoord: 10..53
IPR037171NagB/RpiA transferase-likeSUPERFAMILY100950NagB/RpiA/CoA transferase-likecoord: 7..51

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig11154contigE-siliculosus-1a_F_contig11154:264..452 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig11154.776.1mRNA_E-siliculosus-1a_F_contig11154.776.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig11154 264..452 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig11154.776.1 ID=prot_E-siliculosus-1a_F_contig11154.776.1|Name=mRNA_E-siliculosus-1a_F_contig11154.776.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=63bp
MPCPVSRGPQVLNPAYDYIPPNLVDLYITNMGGLQPSYIYRLLAEYYHRD
DLIISPSDEQAS*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR037171NagB/RpiA_transferase-like
IPR042529IF_2B-like_C
IPR000649IF-2B-related