mRNA_E-siliculosus-1a_F_contig11154.776.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig11154.776.1
Unique NamemRNA_E-siliculosus-1a_F_contig11154.776.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig11154.776.1 vs. uniprot
Match: D8LHD8_ECTSI (Eukaryotic translation initiation factor 2B beta subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHD8_ECTSI)

HSP 1 Score: 112 bits (279), Expect = 1.310e-27
Identity = 53/56 (94.64%), Postives = 54/56 (96.43%), Query Frame = 1 
Query:   19 RGPQVLNPAYDYIPPNLVDLYITNMGGLQPSYIYRLLAEYYHRDDLIISPSDEQAS 186
            R  +VLNPAYDYIPPNLVDLYITNMGGLQPSYIYRLLAEYYHRDDLIISPSDEQAS
Sbjct:  419 RNVEVLNPAYDYIPPNLVDLYITNMGGLQPSYIYRLLAEYYHRDDLIISPSDEQAS 474
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig11154.776.1 vs. uniprot
Match: A0A6H5KHV2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHV2_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 8.060e-27
Identity = 49/54 (90.74%), Postives = 51/54 (94.44%), Query Frame = 1 
Query:    7 CPVSRGPQVLNPAYDYIPPNLVDLYITNMGGLQPSYIYRLLAEYYHRDDLIISP 168
            C V+R  QVLNPAYDYIPPNLVDLYITNMGGLQPSYIYRLLAEYYHRD+LIISP
Sbjct:   25 CRVAR--QVLNPAYDYIPPNLVDLYITNMGGLQPSYIYRLLAEYYHRDELIISP 76
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig11154.776.1 vs. uniprot
Match: A0A6H5JGR9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGR9_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 4.670e-26
Identity = 49/54 (90.74%), Postives = 50/54 (92.59%), Query Frame = 1 
Query:    7 CPVSRGPQVLNPAYDYIPPNLVDLYITNMGGLQPSYIYRLLAEYYHRDDLIISP 168
            C V+R  QVLNPAYD IPPNLVDLYITNMGGLQPSYIYRLLAEYYHRDDLIISP
Sbjct:   25 CRVAR--QVLNPAYDCIPPNLVDLYITNMGGLQPSYIYRLLAEYYHRDDLIISP 76
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig11154.776.1 vs. uniprot
Match: A0A836CBW3_9STRA (Eukaryotic translation initiation factor 2B beta subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBW3_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 1.600e-19
Identity = 40/55 (72.73%), Postives = 47/55 (85.45%), Query Frame = 1 
Query:   13 VSRGPQVLNPAYDYIPPNLVDLYITNMGGLQPSYIYRLLAEYYHRDDLIISPSDE 177
            ++   +VLNPAYDYIPP LVDLY+TN+GG QPSYIYRLLAEYYHRDD I++P  E
Sbjct:  342 LAESIEVLNPAYDYIPPELVDLYMTNIGGHQPSYIYRLLAEYYHRDDYILAPEFE 396
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig11154.776.1 vs. uniprot
Match: A0A7S3XZZ5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XZZ5_HETAK)

HSP 1 Score: 85.1 bits (209), Expect = 1.060e-18
Identity = 37/49 (75.51%), Postives = 43/49 (87.76%), Query Frame = 1 
Query:   28 QVLNPAYDYIPPNLVDLYITNMGGLQPSYIYRLLAEYYHRDDLIISPSD 174
            +VLNPAYDYIPP L+DLYITNMGG QPSYIYRLLAEYYH +D ++S  +
Sbjct:  194 EVLNPAYDYIPPELIDLYITNMGGHQPSYIYRLLAEYYHHEDSVLSAQE 242
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig11154.776.1 vs. uniprot
Match: B8C5F6_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C5F6_THAPS)

HSP 1 Score: 77.8 bits (190), Expect = 2.910e-15
Identity = 33/48 (68.75%), Postives = 39/48 (81.25%), Query Frame = 1 
Query:   10 PVSRGPQVLNPAYDYIPPNLVDLYITNMGGLQPSYIYRLLAEYYHRDD 153
            PV    + +NP +DYIPP L+DLY+TN+GG QPSYIYRLLAEYYH DD
Sbjct:  429 PVLSEVEFVNPVHDYIPPQLIDLYVTNIGGFQPSYIYRLLAEYYHSDD 476
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig11154.776.1 vs. uniprot
Match: A0A7S2DRQ5_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DRQ5_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 2.280e-14
Identity = 30/42 (71.43%), Postives = 36/42 (85.71%), Query Frame = 1 
Query:   28 QVLNPAYDYIPPNLVDLYITNMGGLQPSYIYRLLAEYYHRDD 153
            +VLNPAYD++PP L+ LY+TN GG QPSYIYRLLAE+YH  D
Sbjct:   91 EVLNPAYDFVPPELIALYVTNNGGYQPSYIYRLLAEFYHPSD 132
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig11154.776.1 vs. uniprot
Match: A0A7S2XMS8_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XMS8_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 6.030e-14
Identity = 29/42 (69.05%), Postives = 37/42 (88.10%), Query Frame = 1 
Query:   28 QVLNPAYDYIPPNLVDLYITNMGGLQPSYIYRLLAEYYHRDD 153
            + +NP +DYIPP L++LY+TN+GG QPSY+YRLLAEYYH DD
Sbjct:  209 EFVNPIHDYIPPQLINLYVTNIGGFQPSYLYRLLAEYYHSDD 250
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig11154.776.1 vs. uniprot
Match: A0A0L0G6J3_9EUKA (Uncharacterized protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0G6J3_9EUKA)

HSP 1 Score: 71.6 bits (174), Expect = 3.710e-13
Identity = 29/50 (58.00%), Postives = 37/50 (74.00%), Query Frame = 1 
Query:   13 VSRGPQVLNPAYDYIPPNLVDLYITNMGGLQPSYIYRLLAEYYHRDDLII 162
            +    Q+  P YDY+PPNL+ LY+TN GG  P+YIYRLL+EYYH DD I+
Sbjct:  318 IHHSGQIQTPLYDYVPPNLISLYVTNSGGHAPTYIYRLLSEYYHPDDQIL 367
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig11154.776.1 vs. uniprot
Match: A0A7S2GLW7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GLW7_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 3.790e-13
Identity = 30/42 (71.43%), Postives = 36/42 (85.71%), Query Frame = 1 
Query:   28 QVLNPAYDYIPPNLVDLYITNMGGLQPSYIYRLLAEYYHRDD 153
            +VLNPAYD++PP L+ LY+TN GG QPSYIYRLLAE+YH  D
Sbjct:  323 EVLNPAYDFVPPELIALYVTNNGGYQPSYIYRLLAEFYHPSD 364
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig11154.776.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHD8_ECTSI1.310e-2794.64Eukaryotic translation initiation factor 2B beta s... [more]
A0A6H5KHV2_9PHAE8.060e-2790.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JGR9_9PHAE4.670e-2690.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CBW3_9STRA1.600e-1972.73Eukaryotic translation initiation factor 2B beta s... [more]
A0A7S3XZZ5_HETAK1.060e-1875.51Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
B8C5F6_THAPS2.910e-1568.75Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A7S2DRQ5_9STRA2.280e-1471.43Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2XMS8_9STRA6.030e-1469.05Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A0L0G6J3_9EUKA3.710e-1358.00Uncharacterized protein n=1 Tax=Sphaeroforma arcti... [more]
A0A7S2GLW7_9STRA3.790e-1371.43Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig11154contigE-siliculosus-1a_F_contig11154:264..452 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size189
Model size189
Exons1
Hectar predicted targeting categoryother localisation
Seed ortholog score114.0
Taxonomic scopeEukaryota
BRITEko00000,ko00001,ko01000,ko02000,ko03012,ko04121
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.J
EC2.3.2.27
EggNOG OGsCOG1184@1,KOG1465@2759
EggNOG free text desc.translation initiation factor activity
GOsGO:0000003,GO:0000166,GO:0001541,GO:0001558,GO:0001666,GO:0001882,GO:0001883,GO:0002181,GO:0002183,GO:0002253,GO:0002376,GO:0002429,GO:0002682,GO:0002684,GO:0002757,GO:0002764,GO:0002768,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0005085,GO:0005488,GO:0005515,GO:0005524,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005829,GO:0005851,GO:0006412,GO:0006413,GO:0006417,GO:0006446,GO:0006518,GO:0006807,GO:0006950,GO:0007154,GO:0007165,GO:0007166,GO:0007272,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0007548,GO:0008135,GO:0008144,GO:0008150,GO:0008152,GO:0008361,GO:0008366,GO:0008406,GO:0008585,GO:0009058,GO:0009059,GO:0009266,GO:0009408,GO:0009628,GO:0009719,GO:0009725,GO:0009743,GO:0009746,GO:0009749,GO:0009889,GO:0009987,GO:0010001,GO:0010033,GO:0010243,GO:0010467,GO:0010468,GO:0010556,GO:0010608,GO:0010720,GO:0010769,GO:0010770,GO:0010975,GO:0010976,GO:0014003,GO:0016043,GO:0017076,GO:0019001,GO:0019222,GO:0019538,GO:0019899,GO:0021537,GO:0021543,GO:0021761,GO:0021766,GO:0021782,GO:0022008,GO:0022414,GO:0022603,GO:0022604,GO:0023052,GO:0030154,GO:0030234,GO:0030307,GO:0030424,GO:0030516,GO:0030554,GO:0030900,GO:0031323,GO:0031326,GO:0031344,GO:0031346,GO:0032045,GO:0032268,GO:0032501,GO:0032502,GO:0032535,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032559,GO:0032561,GO:0032991,GO:0033554,GO:0034248,GO:0034284,GO:0034641,GO:0034645,GO:0035639,GO:0036094,GO:0036293,GO:0036294,GO:0040008,GO:0042063,GO:0042221,GO:0042552,GO:0042995,GO:0043005,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043434,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0045137,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0045773,GO:0045927,GO:0046545,GO:0046660,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048608,GO:0048638,GO:0048639,GO:0048699,GO:0048709,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050769,GO:0050770,GO:0050772,GO:0050776,GO:0050778,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050851,GO:0050852,GO:0050896,GO:0051020,GO:0051094,GO:0051128,GO:0051130,GO:0051171,GO:0051239,GO:0051240,GO:0051246,GO:0051716,GO:0051960,GO:0051962,GO:0060255,GO:0060284,GO:0060322,GO:0061387,GO:0061458,GO:0065007,GO:0065008,GO:0065009,GO:0070482,GO:0070887,GO:0071453,GO:0071456,GO:0071704,GO:0071840,GO:0080090,GO:0090066,GO:0097159,GO:0097367,GO:0097458,GO:0098772,GO:0120025,GO:0120035,GO:1901265,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901652,GO:1901698,GO:1901700,GO:2000026,GO:2000112
KEGG Pathwayko00604,ko01100,ko03013,map00604,map01100,map03013
KEGG TC2.A.1.25
KEGG koko:K03372,ko:K03754,ko:K19041
Preferred nameEIF2B2
Seed eggNOG ortholog2880.D8LHD8
Seed ortholog evalue2.5e-23
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927621.0639732-CDS-E-siliculosus-1a_F_contig11154:263..4521622927621.0639732-CDS-E-siliculosus-1a_F_contig11154:263..452Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11154 264..452 +
1696318613.8173192-CDS-E-siliculosus-1a_F_contig11154:263..4521696318613.8173192-CDS-E-siliculosus-1a_F_contig11154:263..452Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11154 264..452 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig11154.776.1prot_E-siliculosus-1a_F_contig11154.776.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig11154 264..452 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig11154.776.1

>prot_E-siliculosus-1a_F_contig11154.776.1 ID=prot_E-siliculosus-1a_F_contig11154.776.1|Name=mRNA_E-siliculosus-1a_F_contig11154.776.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=63bp
MPCPVSRGPQVLNPAYDYIPPNLVDLYITNMGGLQPSYIYRLLAEYYHRD
DLIISPSDEQAS*
back to top

mRNA from alignment at E-siliculosus-1a_F_contig11154:264..452+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig11154.776.1 ID=mRNA_E-siliculosus-1a_F_contig11154.776.1|Name=mRNA_E-siliculosus-1a_F_contig11154.776.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=189bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11154:264..452+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCCATGTCCTGTGTCGCGTGGCCCGCAGGTTTTGAACCCCGCGTACGA
CTACATCCCACCCAACCTCGTCGATCTCTACATCACCAACATGGGGGGCT
TGCAACCGTCGTACATCTACCGGCTGTTGGCGGAATACTACCACAGGGAT
GACCTGATCATCTCGCCTTCAGACGAGCAGGCCAGCTGA
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig11154:264..452+

>mRNA_E-siliculosus-1a_F_contig11154.776.1 ID=mRNA_E-siliculosus-1a_F_contig11154.776.1|Name=mRNA_E-siliculosus-1a_F_contig11154.776.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=378bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11154:264..452+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCCATGTCCTGTGTCGCGTGGCCCGCAGGTTTTGAACCCCGCGTACGA
CTACATCCCACCCAACCTCGTCGATCTCTACATCACCAACATGGGGGGCT
TGCAACCGTCGTACATCTACCGGCTGTTGGCGGAATACTACCACAGGGAT
GACCTGATCATCTCGCCTTCAGACGAGCAGGCCAGCTGAATGCCATGTCC
TGTGTCGCGTGGCCCGCAGGTTTTGAACCCCGCGTACGACTACATCCCAC
CCAACCTCGTCGATCTCTACATCACCAACATGGGGGGCTTGCAACCGTCG
TACATCTACCGGCTGTTGGCGGAATACTACCACAGGGATGACCTGATCAT
CTCGCCTTCAGACGAGCAGGCCAGCTGA
back to top