prot_E-siliculosus-1a_F_contig1113.765.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig1113.765.1
Unique Nameprot_E-siliculosus-1a_F_contig1113.765.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length301
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1113.765.1 vs. uniprot
Match: D8LT94_ECTSI (DNA-directed RNA polymerase III subunit RPC6 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LT94_ECTSI)

HSP 1 Score: 583 bits (1502), Expect = 5.390e-210
Identity = 299/300 (99.67%), Postives = 300/300 (100.00%), Query Frame = 0
Query:    1 MTSLSQEKFASLHGRLMTILSADSSDDGVNSEVLSESFGEEYPLLVDVINSLLVDNRLQLSKGENDTMWYKLVQEEKAKKLMGLTPEQMMIYQVIEKAGNKGIWTRDIKTATNVNQNTMTKTLKSLEGRHLVKTAKSVTSKSKKLYMLYELTPAKEITGGPWYTDQEFDYEFVKHLSTYVLSYVKEQETPPLKDIAAAIKVSGISKIDLSMEEVKLIVSTLVYDGLLEEVRGAASRFNRDAGDGPVYKMAPAVEVVNAFTEVPCGTCKVMKHCSEDGVVSPKTCVYLAEWLNLPNSDELF 300
            MTSLSQEKFASLHGRLMTILSADSSDDGVNSEVLSESFGEEYPLLVDVINSLLVDNRLQLSKGENDTMWYKLVQEEKAKKLMGLTPEQMMIYQVIEKAGNKGIWTRDIKTATNVNQNTMTKTLKSLEGRHLVKTAKSVTSKSKKLYMLYELTPAKEITGGPWYTDQEFDYEFVKHLS+YVLSYVKEQETPPLKDIAAAIKVSGISKIDLSMEEVKLIVSTLVYDGLLEEVRGAASRFNRDAGDGPVYKMAPAVEVVNAFTEVPCGTCKVMKHCSEDGVVSPKTCVYLAEWLNLPNSDELF
Sbjct:    1 MTSLSQEKFASLHGRLMTILSADSSDDGVNSEVLSESFGEEYPLLVDVINSLLVDNRLQLSKGENDTMWYKLVQEEKAKKLMGLTPEQMMIYQVIEKAGNKGIWTRDIKTATNVNQNTMTKTLKSLEGRHLVKTAKSVTSKSKKLYMLYELTPAKEITGGPWYTDQEFDYEFVKHLSSYVLSYVKEQETPPLKDIAAAIKVSGISKIDLSMEEVKLIVSTLVYDGLLEEVRGAASRFNRDAGDGPVYKMAPAVEVVNAFTEVPCGTCKVMKHCSEDGVVSPKTCVYLAEWLNLPNSDELF 300          
BLAST of mRNA_E-siliculosus-1a_F_contig1113.765.1 vs. uniprot
Match: A0A7R9U7U3_9STRA (DNA-directed RNA polymerase III subunit RPC6 n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U7U3_9STRA)

HSP 1 Score: 271 bits (694), Expect = 4.510e-87
Identity = 139/276 (50.36%), Postives = 189/276 (68.48%), Query Frame = 0
Query:   23 DSSDDGVNSEVLSESFGEEYPLLVDVINSLLVDNRLQLSKGENDTMWYKLVQEEKAKKLMGLTPEQMMIYQVIEKAGNKGIWTRDIKTATNVNQNTMTKTLKSLEGRHLVKTAKSVTSKSKKLYMLYELTPAKEITGGPWYTDQEFDYEFVKHLSTYVLSYVKEQETPPLKDIAAAIKVSGISKIDLSMEEVKLIVSTLVYDGLLEEVRGAA-SRFNRDAGDGPVYKMAPAVEVVNAFTEVPCGTCKVMKHCSEDGVVSPKTCVYLAEWLNLPNSD 297
            D +D GV+ E+L   FG+EY  L DV+N++L   R+ + +  +DT+ YKLV  EKA KL GLT EQ +IYQ I+KAGNKGIWTR I T TNV Q  +TKTLK LE R L+K+ KSVTS+ KKLYML+E  PA EITGG WY++ EFD+EFV  +S +V +Y+K+ E+  L+DIA A++ +G SK+DLS ++V+ IV +L++DG +E V+    ++   D  +GP+Y+  P +      TE PCG C V   C E GV+SP TCVY+  WL L + D
Sbjct:   30 DENDGGVSDELLQHEFGKEYGKLADVLNTMLEQRRVTILRAHDDTLVYKLVSAEKASKLQGLTREQELIYQEIKKAGNKGIWTRKITTETNVQQQVLTKTLKLLEQRQLIKSVKSVTSRRKKLYMLFEEVPATEITGGAWYSEGEFDHEFVSSMSQFVYTYIKQGESASLQDIAKAVRETGFSKVDLSTDDVQQIVESLIFDGRVERVQNPILTQMGLD--NGPLYRSKPKITTPQFVTENPCGICPVANQCCEGGVISPATCVYMNHWLELDSLD 303          
BLAST of mRNA_E-siliculosus-1a_F_contig1113.765.1 vs. uniprot
Match: A0A2D4BDY6_PYTIN (DNA-directed RNA polymerase III subunit RPC6 n=2 Tax=Pythium TaxID=4797 RepID=A0A2D4BDY6_PYTIN)

HSP 1 Score: 235 bits (600), Expect = 5.490e-73
Identity = 129/292 (44.18%), Postives = 185/292 (63.36%), Query Frame = 0
Query:    6 QEKFASLHGRLMTILSADSSDDGVNSEVLSESFGEEYPLLVDVINSLLVDNRLQLSKGENDTMWYKLVQEEKAKKLMGLTPEQMMIYQVIEKAGNKGIWTRDIKTATNVNQNTMTKTLKSLEGRHLVKTAKSVTSKSKKLYMLYELTPAKEITGGPWYTDQEFDYEFVKHLSTYVLSYVKEQETPPLKDIAAAIKVSGISKIDLSMEEVKLIVSTLVYDGLLEEVRGAASRFNRDAGDGPVYKMAPAVEVVNAFTEVPCGTCKVMKHCSEDGVVSPKTCVYLAEWLNLPNSD 297
            QE+ A +H  L  + S    D   ++EV     G EY  L  VIN+L+ + R++  +     + Y +V  E+A+++ GLT EQ ++ Q IE+AGNKG+WTRDIKT TN+ Q  +TKTL+ LE R LVK+ KS++SK+KKLYML++L P+ EITGGPWY +QEFD+ F+  LST+V   +K      LK I   +  SGISK+ L  +E++ I+ TL+YDG +EEVR  A R    A     YK++  +   NA +E PCG C V   C E  V+SP++C+YL +WL+L + +
Sbjct:    9 QEQQALMHKFLSLLRSYP--DPLTDAEVREAFAGGEYERLPTVINALMGEGRIKXFQ-RGSVLSYGVVGAEEAERIKGLTIEQRLVLQEIERAGNKGVWTRDIKTHTNIPQQIVTKTLRVLESRRLVKSVKSISSKNKKLYMLFDLVPSTEITGGPWYNEQEFDHVFIDTLSTFVYEVIKASGMSTLKAITDKVHASGISKVALGPDEIRSIIQTLMYDGRVEEVR--AVRLTPGANHETKYKISQEISTFNALSETPCGVCPVFDQCQEGNVISPRSCLYLTKWLDLKDLE 295          
BLAST of mRNA_E-siliculosus-1a_F_contig1113.765.1 vs. uniprot
Match: A0A067BY85_SAPPC (DNA-directed RNA polymerase III subunit RPC6 n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067BY85_SAPPC)

HSP 1 Score: 231 bits (588), Expect = 2.440e-71
Identity = 120/280 (42.86%), Postives = 189/280 (67.50%), Query Frame = 0
Query:   24 SSDDGVNSEVLSESFGEEYPLLVDVINSLLVDNRLQ-LSKGENDTMWYKLVQEEKAKKLMGLTPEQMMIYQVIEKAGNKGIWTRDIKTATNVNQNTMTKTLKSLEGRHLVKTAKSVTSKSKKLYMLYELTPAKEITGGPWYTDQEFDYEFVKHLSTYVLSYVKEQETPPLKDIAAAIKVSGISKIDLSMEEVKLIVSTLVYDGLLEEVRGA--ASRFNRDAGDGPVYKMAPAVEVVNAFTEVPCGTCKVMKHCSEDGVVSPKTCVYLAEWLNLPNSDELF 300
            SS + +  +V+ +SFG++Y  L   IN L+ ++R++ L +G N  + Y+LV +E+++++ GL+ E   +   IEK+GNKG+WTRDIK  TN+ + T+ K +++LE RHLVK  KS++ K+KKLYMLY+L P+++ITGGPWY +QEFD++F+  LST+V  +++ +    L+ I   +  SGI+K+ L  +E+  IV+TL+YD  +EEVR A  A+   RD      YK+   V V +  +E PCG C V + C++  +VSP TCVYL +W+N+  +D+LF
Sbjct:   13 SSTEPIGDDVVRKSFGDQYAKLPVCINRLMGESRIKILMQGSN--VLYQLVTKEESERMQGLSGEHRAVLHEIEKSGNKGVWTRDIKMQTNLPEMTIRKIIRTLESRHLVKAVKSISQKNKKLYMLYDLVPSRDITGGPWYNEQEFDHDFIDTLSTFVCQFIRAKGVVTLQQITDKVHESGIAKVSLGPDEMMSIVNTLIYDERIEEVRTARLANGEMRDVS----YKICRDVSVFDGLSEAPCGVCPVFEQCADGNIVSPATCVYLTKWMNV--ADDLF 284          
BLAST of mRNA_E-siliculosus-1a_F_contig1113.765.1 vs. uniprot
Match: A0A0W8DBA8_PHYNI (DNA-directed RNA polymerase III subunit RPC6 n=24 Tax=Peronosporaceae TaxID=4777 RepID=A0A0W8DBA8_PHYNI)

HSP 1 Score: 230 bits (587), Expect = 4.290e-71
Identity = 118/259 (45.56%), Postives = 168/259 (64.86%), Query Frame = 0
Query:   39 GEEYPLLVDVINSLLVDNRLQLSKGENDTMWYKLVQEEKAKKLMGLTPEQMMIYQVIEKAGNKGIWTRDIKTATNVNQNTMTKTLKSLEGRHLVKTAKSVTSKSKKLYMLYELTPAKEITGGPWYTDQEFDYEFVKHLSTYVLSYVKEQETPPLKDIAAAIKVSGISKIDLSMEEVKLIVSTLVYDGLLEEVRGAASRFNRDAGDGPVYKMAPAVEVVNAFTEVPCGTCKVMKHCSEDGVVSPKTCVYLAEWLNLPNSD 297
            G  Y  L DVIN+LL + ++++ K +   + Y +V  E+A+++ GLT EQ ++ Q IE+AGNKGIWTRDIK+ TN+ Q  +TKTL+ LE R LVK+ KS++SK+KKLYML++L P+ EITGGPWY +QEFD+ F+  LST+V   +K      L  I   +  SGISK+ L  EE++ I+ TL+YDG +EEVR A+            YK++  +   N  +E PCG C V   C E  V+SP++C+Y+ +WL L   D
Sbjct:   41 GGGYEQLPDVINALLTEGKIKIFK-KGSVLSYGIVDAEEAERIRGLTLEQRLVLQEIERAGNKGIWTRDIKSHTNIPQQIVTKTLRLLETRRLVKSVKSISSKNKKLYMLFDLVPSTEITGGPWYNEQEFDHVFIDTLSTFVYEVIKASGMSTLNAITDKVHASGISKVALGPEEIRSIIQTLMYDGRVEEVRSASHEVK--------YKVSQQITTFNYLSETPCGVCPVFDQCQEGNVISPRSCLYMTKWLGLKELD 290          
BLAST of mRNA_E-siliculosus-1a_F_contig1113.765.1 vs. uniprot
Match: A0A1Y1IK16_KLENI (DNA-directed RNA polymerase III subunit RPC6 n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IK16_KLENI)

HSP 1 Score: 226 bits (577), Expect = 1.340e-69
Identity = 123/271 (45.39%), Postives = 180/271 (66.42%), Query Frame = 0
Query:   25 SDDGVNSEVLSESFGEEYPL--LVDVINSLLVDNRLQLSKGENDTMWYKLVQEEKAKKLMGLTPEQMMIYQVIEKAGNKGIWTRDIKTATNVNQNTMTKTLKSLEGRHLVKTAKSVTSKSKKLYMLYELTPAKEITGGPWYTDQEFDYEFVKHLSTYVLSYVKEQETPPLKDIAAAIKVSGISKIDLSMEEVKLIVSTLVYDGLLEEVRGAASRFNRDA-GDGPVYKMAP-AVEVVNAFTEVPCGTCKVMKHCSEDGVVSPKTCVYLAEWL 291
            SD GV  ++L +    + PL  L   +N LL  ++LQ+   +  T++YK V +E   +  GL  E+M++YQ+I+ + N GIWTRD+K  +N+ Q  +TK +K+LEGR L+K  KSV SK++K+YMLYE+ P++EITGG WYT+QEFD EF+  L   V  +V+ Q    L++IAA +K SG +K+DL +E+ + + +TLVYDG +EE+    S F+ D   D   Y+M+P +V   NAFT +PCG C V+  CS+DG++SP TCVY  EWL
Sbjct:   24 SDGGVTQKMLQDEL-PDIPLEELGSALNVLLSRHQLQMYT-QASTLYYKPVNQEDRVRFRGLGSEEMLVYQIIQASQNMGIWTRDLKLRSNLQQPQITKIIKTLEGRRLIKAVKSVASKNRKVYMLYEIEPSREITGGAWYTEQEFDAEFIGVLREAVKKFVENQGKVTLEEIAAFVKSSGATKVDLRLEDYQQVANTLVYDGEVEEI----SEFDPDEDADTTFYRMSPMSVPETNAFTSIPCGVCPVLHECSDDGLISPATCVYYQEWL 288          
BLAST of mRNA_E-siliculosus-1a_F_contig1113.765.1 vs. uniprot
Match: A0A1V9ZF30_9STRA (DNA-directed RNA polymerase III subunit RPC6 n=2 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1V9ZF30_9STRA)

HSP 1 Score: 225 bits (573), Expect = 6.050e-69
Identity = 122/289 (42.21%), Postives = 187/289 (64.71%), Query Frame = 0
Query:   24 SSDDGVNSEVLSESFGEEYPLLVDVINSLLVDNRLQLSKGENDTMWYKLVQEEKAKKLMGLT----------PEQMMIYQVIEKAGNKGIWTRDIKTATNVNQNTMTKTLKSLEGRHLVKTAKSVTSKSKKLYMLYELTPAKEITGGPWYTDQEFDYEFVKHLSTYVLSYVKEQETPPLKDIAAAIKVSGISKIDLSMEEVKLIVSTLVYDGLLEEVRGA--ASRFNRDAGDGPVYKMAPAVEVVNAFTEVPCGTCKVMKHCSEDGVVSPKTCVYLAEWLNLPNSDELF 300
            SS + V+  V+ +SFGE+Y  L   IN L+ ++R+++   +  T+ Y+LV +E+A+++ GL+           E   +   IEKAGNKG+WTRDIK+ TN+ + T+ K ++ LE RHLVK  KS++ K+KKLYMLY+L P+++ITGGPWY +QEFD++F+  LS +V  +++ +    L+ I   +  SGI+K+ L  EE+  IV+TL+YD  +EEVR A  A+   R+      YK+   V V +A +E PCG C V   C++  +VSP TCVYL +W+N+  +D+LF
Sbjct:   13 SSTEPVSDNVIKKSFGEQYAKLPSCINRLVNESRVKILM-QGTTLMYQLVPKEEAERMQGLSYVAVNSNYHWGEHRAVLHEIEKAGNKGVWTRDIKSQTNLAEVTIRKIIRVLETRHLVKAVKSISQKNKKLYMLYDLVPSRDITGGPWYNEQEFDHDFIDTLSNFVCQFIRAKGVVTLQQITDKVHESGIAKVSLGPEEMMSIVNTLIYDERIEEVRTARLANGEMREVS----YKICRDVSVFDALSEAPCGICPVFDQCADGNIVSPATCVYLTKWMNV--ADDLF 294          
BLAST of mRNA_E-siliculosus-1a_F_contig1113.765.1 vs. uniprot
Match: K3X6G1_GLOUD (DNA-directed RNA polymerase III subunit RPC6 n=2 Tax=Pythiaceae TaxID=4782 RepID=K3X6G1_GLOUD)

HSP 1 Score: 224 bits (570), Expect = 1.660e-68
Identity = 113/257 (43.97%), Postives = 168/257 (65.37%), Query Frame = 0
Query:   41 EYPLLVDVINSLLVDNRLQLSKGENDTMWYKLVQEEKAKKLMGLTPEQMMIYQVIEKAGNKGIWTRDIKTATNVNQNTMTKTLKSLEGRHLVKTAKSVTSKSKKLYMLYELTPAKEITGGPWYTDQEFDYEFVKHLSTYVLSYVKEQETPPLKDIAAAIKVSGISKIDLSMEEVKLIVSTLVYDGLLEEVRGAASRFNRDAGDGPVYKMAPAVEVVNAFTEVPCGTCKVMKHCSEDGVVSPKTCVYLAEWLNLPNSD 297
            EY  L  V+N L+ + ++++ +  N  + Y ++  E+A+++ GLT EQ ++ Q IE+AGNKGIWTRDIKT TN+ Q  +TKTL+ LE R LVK+ KS++SK+KKLYML++L P+ EITGGPWY +QEFD+ F+  LST+V   +K   T  L  I   +  SGISK+ L  EE++ I+ TL+YDG +EEVR    R          YK++  +   N  +E PCG C V   C E  ++SP++C+Y+++W+ L + +
Sbjct:   39 EYEKLPSVLNVLMSEGKIKIFQKGN-VLSYGVIGAEEAERIRGLTLEQRLVLQEIERAGNKGIWTRDIKTHTNIPQQIVTKTLRLLETRRLVKSVKSISSKNKKLYMLFDLVPSTEITGGPWYNEQEFDHVFIDTLSTFVYEVIKASGTSTLNAITDKVHASGISKVALGPEEIRSIIQTLMYDGRVEEVRTV--RLTPGVSHETKYKVSHDISTFNYLSETPCGVCPVFNQCQEGNIISPRSCLYISKWVELKDLE 292          
BLAST of mRNA_E-siliculosus-1a_F_contig1113.765.1 vs. uniprot
Match: A0A024U424_9STRA (DNA-directed RNA polymerase III subunit RPC6 n=8 Tax=Aphanomyces TaxID=100860 RepID=A0A024U424_9STRA)

HSP 1 Score: 223 bits (568), Expect = 2.440e-68
Identity = 115/272 (42.28%), Postives = 177/272 (65.07%), Query Frame = 0
Query:   24 SSDDGVNSEVLSESFGEEYPLLVDVINSLLVDNRLQLSKGENDTMWYKLVQEEKAKKLMGLTPEQMMIYQVIEKAGNKGIWTRDIKTATNVNQNTMTKTLKSLEGRHLVKTAKSVTSKSKKLYMLYELTPAKEITGGPWYTDQEFDYEFVKHLSTYVLSYVKEQETPPLKDIAAAIKVSGISKIDLSMEEVKLIVSTLVYDGLLEEVRGA--ASRFNRDAGDGPVYKMAPAVEVVNAFTEVPCGTCKVMKHCSEDGVVSPKTCVYLAEWLNL 293
            SS D ++   + +SF  EY  L  VIN L+ D R+++ + +N  + Y LV +E+A+++ GLT EQ  +   IEKAGNKGIWTRDIK  TN+ +  + KT++ LE RHLVK  KS++ K+KKLYML++L P+++ITGGPWY +QEFD++F+  L  +V  +++ +    LK I   +  SGI+K+ L  +E+  I++TL+YD  +EEVR A  AS   R+      YK++  V   +  ++ PCG C V   C++  ++SP TC+YL +WL++
Sbjct:   13 SSTDAISDAQVRDSFRAEYDKLPGVINELVTDGRIKIFQ-QNGNLMYGLVAKEEAERMRGLTVEQRGVLHEIEKAGNKGIWTRDIKAKTNIPEVIIRKTIRLLETRHLVKAVKSISQKNKKLYMLFDLVPSRDITGGPWYNEQEFDHDFIDTLRNFVCQFIRAKGIVTLKQITDKVHESGIAKVSLGPDEMMSILNTLIYDDRVEEVRAARLASGEWREVS----YKVSREVTDFDTLSDTPCGVCPVFDQCADGNIISPATCIYLTKWLDI 279          
BLAST of mRNA_E-siliculosus-1a_F_contig1113.765.1 vs. uniprot
Match: A0A4D9CUF8_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CUF8_9STRA)

HSP 1 Score: 233 bits (594), Expect = 4.090e-68
Identity = 118/270 (43.70%), Postives = 178/270 (65.93%), Query Frame = 0
Query:   27 DGVNSEVLSESFGEEYPLLVDVINSLLVDNRLQLSKGENDTMWYKLVQEEKAKKLMGLTPEQMMIYQVIEKAGNKGIWTRDIKTATNVNQNTMTKTLKSLEGRHLVKTAKSVTSKSKKLYMLYELTPAKEITGGPWYTDQEFDYEFVKHLSTYVLSYVKEQETPP-LKDIAAAIKVSGISKIDLSMEEVKLIVSTLVYDGLLEEVRGAASRFNRDAGDGPVYKMAPAVEVVNAFTEVPCGTCKVMKHCSEDGVVSPKTCVYLAEWLNLPN 295
            +G+ +E L E F E Y  LV +INS L +N ++  K E++ + Y+ V    A+K+  L  EQ+++YQV+EKAGNKGIW +DI++ T++ Q  + K LK+LE R LVK+  S++SK++KLY+LY+L PAKEITGGPWYT+ EFD+EF++ LS  +  ++K+Q  PP L  I   ++ SG+SK++L+  EV+LI+++L YD  +E V+ +       +   P YK++  V  +N FT+ PCG C V   C E G +SP  C Y   WL++ N
Sbjct:  375 EGLRNEQLREHFTERYLHLVPIINSCLAENLIRCMKTESNELVYQAVDPNLAEKMRNLGAEQLLVYQVVEKAGNKGIWHKDIRSQTSLQQPALKKILKNLESRQLVKSTSSISSKTRKLYLLYDLEPAKEITGGPWYTEHEFDHEFIEELSRAIYLFIKQQRKPPSLGIIVDYVRNSGVSKVELAPGEVQLIINSLAYDMKIEPVQNSLVGALPSSDGTPCYKISRQVTPLNHFTDFPCGRCPVQAQCEEGGEISPANCRYFNVWLDVNN 644          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1113.765.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LT94_ECTSI5.390e-21099.67DNA-directed RNA polymerase III subunit RPC6 n=2 T... [more]
A0A7R9U7U3_9STRA4.510e-8750.36DNA-directed RNA polymerase III subunit RPC6 n=1 T... [more]
A0A2D4BDY6_PYTIN5.490e-7344.18DNA-directed RNA polymerase III subunit RPC6 n=2 T... [more]
A0A067BY85_SAPPC2.440e-7142.86DNA-directed RNA polymerase III subunit RPC6 n=2 T... [more]
A0A0W8DBA8_PHYNI4.290e-7145.56DNA-directed RNA polymerase III subunit RPC6 n=24 ... [more]
A0A1Y1IK16_KLENI1.340e-6945.39DNA-directed RNA polymerase III subunit RPC6 n=1 T... [more]
A0A1V9ZF30_9STRA6.050e-6942.21DNA-directed RNA polymerase III subunit RPC6 n=2 T... [more]
K3X6G1_GLOUD1.660e-6843.97DNA-directed RNA polymerase III subunit RPC6 n=2 T... [more]
A0A024U424_9STRA2.440e-6842.28DNA-directed RNA polymerase III subunit RPC6 n=8 T... [more]
A0A4D9CUF8_9STRA4.090e-6843.70Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007832RNA polymerase Rpc34PIRSFPIRSF028763RNAP3_C34/C39coord: 6..294
e-value: 1.7E-70
score: 235.6
IPR007832RNA polymerase Rpc34PFAMPF05158RNA_pol_Rpc34coord: 11..191
e-value: 3.1E-53
score: 181.3
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 58..143
e-value: 7.9E-28
score: 98.0
IPR016049RNA polymerase Rpc34-likePANTHERPTHR12780RNA POLYMERASE III DNA DIRECTED , 39KD SUBUNIT-RELATEDcoord: 37..291
IPR036390Winged helix DNA-binding domain superfamilySUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 75..151

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1113contigE-siliculosus-1a_F_contig1113:23836..29671 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1113.765.1mRNA_E-siliculosus-1a_F_contig1113.765.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig1113 23708..30355 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig1113.765.1 ID=prot_E-siliculosus-1a_F_contig1113.765.1|Name=mRNA_E-siliculosus-1a_F_contig1113.765.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=301bp
MTSLSQEKFASLHGRLMTILSADSSDDGVNSEVLSESFGEEYPLLVDVIN
SLLVDNRLQLSKGENDTMWYKLVQEEKAKKLMGLTPEQMMIYQVIEKAGN
KGIWTRDIKTATNVNQNTMTKTLKSLEGRHLVKTAKSVTSKSKKLYMLYE
LTPAKEITGGPWYTDQEFDYEFVKHLSTYVLSYVKEQETPPLKDIAAAIK
VSGISKIDLSMEEVKLIVSTLVYDGLLEEVRGAASRFNRDAGDGPVYKMA
PAVEVVNAFTEVPCGTCKVMKHCSEDGVVSPKTCVYLAEWLNLPNSDELF
*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036390WH_DNA-bd_sf
IPR016049RNA_pol_Rpc34-like
IPR036388WH-like_DNA-bd_sf
IPR007832RNA_pol_Rpc34