mRNA_E-siliculosus-1a_F_contig11022.706.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig11022.706.1 vs. uniprot
Match: A0A6H5KRY8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KRY8_9PHAE) HSP 1 Score: 109 bits (272), Expect = 1.020e-26 Identity = 54/57 (94.74%), Postives = 55/57 (96.49%), Query Frame = 1 Query: 1 QGIALVETRDGKGKDKNASPVSYVPASGLPFSPAERLAALFRIKPKWPMAELEPYIS 171
+GIALVETRD KGKDKNAS VSYVPASGLPFSPAERLAALFRIKPKWPMAELEPYIS
Sbjct: 388 KGIALVETRDSKGKDKNASLVSYVPASGLPFSPAERLAALFRIKPKWPMAELEPYIS 444
BLAST of mRNA_E-siliculosus-1a_F_contig11022.706.1 vs. uniprot
Match: I0Z8H1_COCSC (Uncharacterized protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0Z8H1_COCSC) HSP 1 Score: 46.6 bits (109), Expect = 3.900e-5 Identity = 17/35 (48.57%), Postives = 27/35 (77.14%), Query Frame = 1 Query: 67 YVPASGLPFSPAERLAALFRIKPKWPMAELEPYIS 171
++PA+ +P PA R AALF +KP+W + +LEPY++
Sbjct: 25 HLPAAAMPTDPAARFAALFAVKPRWELPDLEPYLA 59
BLAST of mRNA_E-siliculosus-1a_F_contig11022.706.1 vs. uniprot
Match: A0A7R9Y8B8_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7R9Y8B8_MICPS) HSP 1 Score: 46.6 bits (109), Expect = 8.040e-5 Identity = 26/56 (46.43%), Postives = 34/56 (60.71%), Query Frame = 1 Query: 1 QGIALVETRDGKGKDKNASPVSYVPASGLPFSPAERLAALFRIKPKWPMAELEPYI 168
+G+ALV+ G +NA V A LP +P ER ALF +KP+W M ELEPY+
Sbjct: 45 RGLALVDKTAGVDGSENAF-VRPFRADRLPKTPKERFHALFTLKPRWTMDELEPYV 99 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig11022.706.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 3 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig11022.706.1 >prot_E-siliculosus-1a_F_contig11022.706.1 ID=prot_E-siliculosus-1a_F_contig11022.706.1|Name=mRNA_E-siliculosus-1a_F_contig11022.706.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=58bp QGIALVETRDGKGKDKNASPVSYVPASGLPFSPAERLAALFRIKPKWPMAback to top mRNA from alignment at E-siliculosus-1a_F_contig11022:148..321+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig11022.706.1 ID=mRNA_E-siliculosus-1a_F_contig11022.706.1|Name=mRNA_E-siliculosus-1a_F_contig11022.706.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=174bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11022:148..321+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig11022:148..321+ >mRNA_E-siliculosus-1a_F_contig11022.706.1 ID=mRNA_E-siliculosus-1a_F_contig11022.706.1|Name=mRNA_E-siliculosus-1a_F_contig11022.706.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=348bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11022:148..321+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |