prot_E-siliculosus-1a_F_contig1.26.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig1.26.1
Unique Nameprot_E-siliculosus-1a_F_contig1.26.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length280
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1.26.1 vs. uniprot
Match: A0A6H5KKW4_9PHAE (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKW4_9PHAE)

HSP 1 Score: 497 bits (1280), Expect = 8.780e-177
Identity = 271/284 (95.42%), Postives = 274/284 (96.48%), Query Frame = 0
Query:    1 MDFPGAAEDPEQRSFIDPVWLQQWGLGPKNALDYFALSPFYDKACNNEQCRMQDVDPREGLLNLTGLEFMLVELPPEMSFLPPGQPAPAGPQPRRLFVIKKQVRKSPSSVEVHAIYYIMEGVIYQAPTVQKLIKSRLNKFTHHLNNAFVELSKLAKLRDSGGGYDWAWQKEAKDLQEKAEAAEGVGVAEEDRDAKAALKLSMDNILMGLVEKYIDGDGEGKEGKKPAARGAKRKADGEAATSASLDAXXXXXXXXXXXXXXXX-----TTGGMTKTLGATKPTR 279
            M+FPGAAEDPEQRSFIDPVWLQQWGLGP+NALDYFALSPFYDKACNNEQCRMQ VDPREGLLNLTGLEFMLVELPPEMSFLPPGQPAPAGPQPRRLFVIKKQVRKSPSSVEV AIYYIMEGVIYQAPTVQKLIKSRLNKFTHHLNNAFVELSKLAKLRDSGGGYDWAWQKEAKDLQEKAEAAEGVGVAEEDRDAKAALKLSMDNILMGLVEKYIDGDGEGKEGK+PAARGAKRKADGEA TSASLDA XXXXXXXXXXXXXXX     TTGGMTKTL ATKPTR
Sbjct:    1 MEFPGAAEDPEQRSFIDPVWLQQWGLGPQNALDYFALSPFYDKACNNEQCRMQSVDPREGLLNLTGLEFMLVELPPEMSFLPPGQPAPAGPQPRRLFVIKKQVRKSPSSVEVQAIYYIMEGVIYQAPTVQKLIKSRLNKFTHHLNNAFVELSKLAKLRDSGGGYDWAWQKEAKDLQEKAEAAEGVGVAEEDRDAKAALKLSMDNILMGLVEKYIDGDGEGKEGKEPAARGAKRKADGEAVTSASLDAAXXXXXXXXXXXXXXXXXXTPTTGGMTKTLAATKPTR 284          
BLAST of mRNA_E-siliculosus-1a_F_contig1.26.1 vs. uniprot
Match: D7G6X0_ECTSI (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6X0_ECTSI)

HSP 1 Score: 303 bits (777), Expect = 4.280e-102
Identity = 146/150 (97.33%), Postives = 147/150 (98.00%), Query Frame = 0
Query:    1 MDFPGAAEDPEQRSFIDPVWLQQWGLGPKNALDYFALSPFYDKACNNEQCRMQDVDPREGLLNLTGLEFMLVELPPEMSFLPPGQPAPAGPQPRRLFVIKKQVRKSPSSVEVHAIYYIMEGVIYQAPTVQKLIKSRLNKFTHHLNNAFVE 150
            MDFPGAAEDPEQRSFIDPVWLQQWGLGP+NALDYFALSPFYDKACNNEQCRMQ VDPREGLLNLTGLEFMLVELPPEMSFLPPGQPAPAGPQPRRLFVIKKQVRKSPSSVEV AIYYIMEGVIYQAPTVQKLIKSRLNKFTHHLNNAF E
Sbjct:    1 MDFPGAAEDPEQRSFIDPVWLQQWGLGPENALDYFALSPFYDKACNNEQCRMQGVDPREGLLNLTGLEFMLVELPPEMSFLPPGQPAPAGPQPRRLFVIKKQVRKSPSSVEVQAIYYIMEGVIYQAPTVQKLIKSRLNKFTHHLNNAFGE 150          
BLAST of mRNA_E-siliculosus-1a_F_contig1.26.1 vs. uniprot
Match: A0A835YVL9_9STRA (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVL9_9STRA)

HSP 1 Score: 164 bits (414), Expect = 8.280e-46
Identity = 96/216 (44.44%), Postives = 125/216 (57.87%), Query Frame = 0
Query:    8 EDPEQRSFIDPVWLQQWGLGPKNALDYFALSPFYDKACNNEQCRMQDV-DPREGLLNLTGLEFMLVELPPEMSFLP-PGQPAPAGPQPRRLFVIKKQVRKSPSSVEVHAIYYIMEGVIYQAPTVQKLIKSRLNKFTHHLNNAFVELSKLAKLRDSGGGYDWAWQKEAKDLQEKAEAAEGVGVAE-EDRDAKAALKLSMDNILMGLVEKYIDGDGEG 220
            ED  Q SF D +WL+ + LGP+ A+DYFALSPFYD+  NNE CRMQ + D    +  +TG+E+++ ELPPE   LP PG P    PQPR L VIKKQ RKS +  EV  +YYIM+G IYQAP+   LI SRL K    L+ +F  L  L    ++ G YDW W  EA                  + + A +A++   D IL+ LV +Y   +GEG
Sbjct:   16 EDQTQLSFQDTMWLRSFYLGPETAIDYFALSPFYDRTSNNELCRMQGLTDHVAAMQTMTGIEYVVEELPPETDELPEPGAP----PQPRHLMVIKKQYRKSKTQAEVRGVYYIMDGTIYQAPSALALITSRLQKAAFMLSESFAALRALPA-HNARGAYDWPWNAEAXXXXXXXXXXXXXXXXXXQSQAALSAVRAGADAILLQLVSRYARSEGEG 226          
BLAST of mRNA_E-siliculosus-1a_F_contig1.26.1 vs. uniprot
Match: M4C4K5_HYAAE (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C4K5_HYAAE)

HSP 1 Score: 120 bits (302), Expect = 2.990e-29
Identity = 75/217 (34.56%), Postives = 122/217 (56.22%), Query Frame = 0
Query:    1 MDFPGAAEDPEQRSFIDPVWLQQWGLGPKNALDYFALSPFYDKACNNEQCRMQDVDPREGLLNLTGLEFMLVELPPEMSFLPPGQPAPAGPQPRRLFVIKKQVRKSPSSVEVHAIYYIMEGVIYQAPTVQKLIKSRLNKFTHHLNNAFVELSKLAKLRDSGGGYDWAWQKEAKDLQEKAEAAEGVGVAEEDRDAKAALKLS----MDNILMGLVEKY 213
            M+    A+D    SF D VWLQ + L P+  L YFALSPFYD++CNNE+ +MQ +   + L NL G+E+ L+             P  A   P++L+VI+KQ R S + VE  A+YY+++G +YQAP +  ++ SRL K ++ +N AF  L+   +   + G   +AW   +KD +E    +E + +  + +  K   +      +D+IL+ L++K+
Sbjct:    1 MEVAAHADD-YNASFRDTVWLQSFPLNPQTVLHYFALSPFYDRSCNNERLKMQRLG-LDQLKNLRGIEYELL-------------PNAAKQLPQQLYVIRKQRRSSRTQVEPLAVYYVLDGTVYQAPNIHAMLTSRLKKCSYRINKAFHGLAAGVRFSPTEG---YAWDFSSKDKKEPVIPSEQLQLKLKQKYEKMEKQRENSARVDSILIQLMKKH 199          
BLAST of mRNA_E-siliculosus-1a_F_contig1.26.1 vs. uniprot
Match: A0A2R5GW25_9STRA (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GW25_9STRA)

HSP 1 Score: 120 bits (300), Expect = 9.270e-29
Identity = 69/159 (43.40%), Postives = 101/159 (63.52%), Query Frame = 0
Query:   14 SFIDPVWLQQWGLGPKNALDYFALSPFYDKACNNEQCRMQDVDPREGLLNLTGLEFMLVELPPEMSFLPPGQPAPAGPQPRRLFVIKKQVRKSPSSVEVHAIYYIMEGVIYQAPTVQKLIKSRLNKFTHHLNNAFVELSKLAKLRDSGGGYDWAWQKEA 172
            SF+D  W++ +GL   N LDYFA SPFYD +CNNE  RMQ++          GLE ML ++PP + +    +  P+G +P  LF++ KQ R S + V   A+YYI++ VIYQAP++Q+LI +RL+K T+HL NAF ++ K A+   S G + W +  +A
Sbjct:   65 SFLDDNWIRAFGLSAHNVLDYFACSPFYDTSCNNEILRMQNL----------GLE-MLADMPPGIEY----RLLPSGHEPV-LFIVVKQERASKTVVRRQALYYILDKVIYQAPSLQRLIATRLSKSTNHLQNAFDQMVKAARYAPSQG-FTWHFDGDA 206          
BLAST of mRNA_E-siliculosus-1a_F_contig1.26.1 vs. uniprot
Match: D0NQQ4_PHYIT (Mediator of RNA polymerase II transcription subunit 6 n=15 Tax=Peronosporaceae TaxID=4777 RepID=D0NQQ4_PHYIT)

HSP 1 Score: 117 bits (292), Expect = 6.290e-28
Identity = 72/209 (34.45%), Postives = 116/209 (55.50%), Query Frame = 0
Query:    9 DPEQRSFIDPVWLQQWGLGPKNALDYFALSPFYDKACNNEQCRMQDVDPREGLLNLTGLEFMLVELPPEMSFLPPGQPAPAGPQPRRLFVIKKQVRKSPSSVEVHAIYYIMEGVIYQAPTVQKLIKSRLNKFTHHLNNAFVELSKLAKLRDSGGGYDWAWQKEAKDLQEKAEAAEGVGVAEEDRDAKAALKLS----MDNILMGLVEKY 213
            D    SF D VWLQ + L  +  L YFALSPFYD++CNNE+ +MQ +   + L NL G+E+ L+             P  A   P++LF+I+KQ R   + VE  AIYY+++G +YQAP +  ++ SRL K ++ +N AF  L+   +   + G   +AW   +KD +E    +E + +  + +  K   +      +D+IL+ L++K+
Sbjct:    8 DDYNASFRDTVWLQSFPLNAQTVLHYFALSPFYDRSCNNERLKMQRLG-LDQLKNLRGVEYELL-------------PNTAKQMPQQLFIIRKQRRSGRTQVEPLAIYYVLDGTVYQAPNIHAMLTSRLKKCSYRVNKAFHGLAAGVRFSPTEG---YAWDFSSKDKKEPVIPSEQLQLKLKQKYEKMEKQRENSARVDSILIQLMKKH 199          
BLAST of mRNA_E-siliculosus-1a_F_contig1.26.1 vs. uniprot
Match: A0A484EGT8_BRELC (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EGT8_BRELC)

HSP 1 Score: 111 bits (277), Expect = 2.000e-26
Identity = 61/158 (38.61%), Postives = 91/158 (57.59%), Query Frame = 0
Query:    9 DPEQRSFIDPVWLQQWGLGPKNALDYFALSPFYDKACNNEQCRMQDVDPREGLLNLTGLEFMLVELPPEMSFLPPGQPAPAGPQPRRLFVIKKQVRKSPSSVEVHAIYYIMEGVIYQAPTVQKLIKSRLNKFTHHLNNAFVELSKLAKLRDSGGGYDW 166
            D    SF D VWLQ + L  +  L YFALSPFYD++CNNE+ +MQ +   E L NL G+E+ L+             P  A   P++L++I+KQ R   + VE  A+YY+++G +YQAP +  ++ SRL K ++ +N AF  L+   +   + G Y W
Sbjct:    8 DDYNASFRDTVWLQSFPLNAQTVLHYFALSPFYDRSCNNERLKMQRLG-LEQLKNLRGVEYELL-------------PNAAKQLPQQLYIIRKQRRNGRTQVEPLAVYYVLDGTVYQAPNIHAMLTSRLKKCSYRVNKAFHGLAAGVRFSPTEG-YAW 150          
BLAST of mRNA_E-siliculosus-1a_F_contig1.26.1 vs. uniprot
Match: A9RVG1_PHYPA (Mediator of RNA polymerase II transcription subunit 6 (Fragment) n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9RVG1_PHYPA)

HSP 1 Score: 111 bits (277), Expect = 2.340e-26
Identity = 73/201 (36.32%), Postives = 103/201 (51.24%), Query Frame = 0
Query:   14 SFIDPVWLQQWGLGPKNALDYFALSPFYDKACNNEQCRMQDVDPRE--GLLNLTGLEFMLVELPPEMSFLPPGQPAPAGPQPRRLFVIKKQVRKSPSSVEVHAIYYIMEGVIYQAPTVQKLIKSRLNKFTHHLNNAFVELSKLAKLRDSGGGYDWAWQKEAKDLQEKAEAAEGVGVAEEDRDAKAALKLSMDNILMGLVEK 212
            SF D +WL  + L      DYFALSPFYD+ CNNEQ RM+ + P +   L   TG+E++L E                  Q   LFVI+KQ R  P  V   A YY+++G IYQAP +  +I SR+ +  +H+ NAF + S  AKL   G G     + +  D+Q K    + V       D K  +++  D+IL G++ K
Sbjct:    9 SFRDQLWLSAYPLDRNLVFDYFALSPFYDRTCNNEQLRMEAIHPLDMTHLSKKTGMEYILHEA-----------------QEPHLFVIRKQKRDGPEKVSAQAAYYVLDGSIYQAPHLYNVIGSRVVRSLYHITNAFAQAS--AKLEKIGTG-----EADPADVQVKQSTTKFV-------DMKEVMRV--DSILAGIMRK 176          
BLAST of mRNA_E-siliculosus-1a_F_contig1.26.1 vs. uniprot
Match: A0A0N7L744_PLAHL (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L744_PLAHL)

HSP 1 Score: 110 bits (275), Expect = 2.420e-26
Identity = 60/152 (39.47%), Postives = 90/152 (59.21%), Query Frame = 0
Query:    1 MDFPGAAEDPEQRSFIDPVWLQQWGLGPKNALDYFALSPFYDKACNNEQCRMQDVDPREGLLNLTGLEFMLVELPPEMSFLPPGQPAPAGPQPRRLFVIKKQVRKSPSSVEVHAIYYIMEGVIYQAPTVQKLIKSRLNKFTHHLNNAFVELS 152
            M+  G  +D    SF D VWLQ + L  +  L YFALSPFYD++CNNE+ +MQ +   + L NL G+E+ L+             P  A   P++L++I+KQ R   + VE  AIYY+++G +YQAP +  ++ SRL K ++ +N AF  L+
Sbjct:    1 MEVAGHVDD-YNASFRDTVWLQSFPLNAQTVLHYFALSPFYDRSCNNERLKMQRLG-LDQLKNLRGVEYELL-------------PNAAKQLPQQLYIIRKQRRNGRTQVEPLAIYYVLDGTVYQAPNIHAMLTSRLKKCSYRINKAFHGLA 137          
BLAST of mRNA_E-siliculosus-1a_F_contig1.26.1 vs. uniprot
Match: K3WSB9_GLOUD (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WSB9_GLOUD)

HSP 1 Score: 112 bits (279), Expect = 7.850e-26
Identity = 68/209 (32.54%), Postives = 116/209 (55.50%), Query Frame = 0
Query:    9 DPEQRSFIDPVWLQQWGLGPKNALDYFALSPFYDKACNNEQCRMQDVDPREGLLNLTGLEFMLVELPPEMSFLPPGQPAPAGPQPRRLFVIKKQVRKSPSSVEVHAIYYIMEGVIYQAPTVQKLIKSRLNKFTHHLNNAFVELSKLAKLRDSGGGYDWAWQKEAKDLQEKAEAAEGVGVAEEDRDAKAALKLS----MDNILMGLVEKY 213
            D    SF D +WLQ + L  +  + YFALSPFYD++CNNE+ +MQ +   + L N+ G+E+ ++             P  A   P++LF+I+KQ R   + VE  AIYY+++G +YQAP +  ++ SRL K ++ +N AF  L+   +   + G   +AW   +KD +E    +E + +  + +  K   +      +D+IL+ L++K+
Sbjct:    8 DDYNASFRDTMWLQSFPLNAQTVIHYFALSPFYDRSCNNERLKMQRLG-LDQLKNMRGIEYEVL-------------PNTAKQLPQQLFLIRKQRRSGRTQVEPLAIYYVLDGTVYQAPNIHAMLTSRLKKCSYRVNKAFHTLAAGVRFSPTEG---YAWDFSSKDKKEPIIPSEQLQLKLKQKYEKIEKQREHSARVDSILIQLMKKH 199          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1.26.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KKW4_9PHAE8.780e-17795.42Mediator of RNA polymerase II transcription subuni... [more]
D7G6X0_ECTSI4.280e-10297.33Mediator of RNA polymerase II transcription subuni... [more]
A0A835YVL9_9STRA8.280e-4644.44Mediator of RNA polymerase II transcription subuni... [more]
M4C4K5_HYAAE2.990e-2934.56Mediator of RNA polymerase II transcription subuni... [more]
A0A2R5GW25_9STRA9.270e-2943.40Mediator of RNA polymerase II transcription subuni... [more]
D0NQQ4_PHYIT6.290e-2834.45Mediator of RNA polymerase II transcription subuni... [more]
A0A484EGT8_BRELC2.000e-2638.61Mediator of RNA polymerase II transcription subuni... [more]
A9RVG1_PHYPA2.340e-2636.32Mediator of RNA polymerase II transcription subuni... [more]
A0A0N7L744_PLAHL2.420e-2639.47Mediator of RNA polymerase II transcription subuni... [more]
K3WSB9_GLOUD7.850e-2632.54Mediator of RNA polymerase II transcription subuni... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007018Mediator complex, subunit Med6PFAMPF04934Med6coord: 14..156
e-value: 4.1E-39
score: 133.4
IPR007018Mediator complex, subunit Med6PANTHERPTHR13104MED-6-RELATEDcoord: 8..254
IPR038566Med6 core domain superfamilyGENE3D3.10.450.580coord: 6..152
e-value: 3.6E-36
score: 125.7
NoneNo IPR availablePANTHERPTHR13104:SF0MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 6coord: 8..254

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1contigE-siliculosus-1a_F_contig1:186482..190444 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1.26.1mRNA_E-siliculosus-1a_F_contig1.26.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig1 186137..190539 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig1.26.1 ID=prot_E-siliculosus-1a_F_contig1.26.1|Name=mRNA_E-siliculosus-1a_F_contig1.26.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=280bp
MDFPGAAEDPEQRSFIDPVWLQQWGLGPKNALDYFALSPFYDKACNNEQC
RMQDVDPREGLLNLTGLEFMLVELPPEMSFLPPGQPAPAGPQPRRLFVIK
KQVRKSPSSVEVHAIYYIMEGVIYQAPTVQKLIKSRLNKFTHHLNNAFVE
LSKLAKLRDSGGGYDWAWQKEAKDLQEKAEAAEGVGVAEEDRDAKAALKL
SMDNILMGLVEKYIDGDGEGKEGKKPAARGAKRKADGEAATSASLDAASA
AATSTAAPSSATPTTGGMTKTLGATKPTR*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR038566Med6_sf
IPR007018Mediator_Med6