mRNA_E-siliculosus-1a_F_contig1.26.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1.26.1
Unique NamemRNA_E-siliculosus-1a_F_contig1.26.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1.26.1 vs. uniprot
Match: A0A6H5KKW4_9PHAE (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKW4_9PHAE)

HSP 1 Score: 498 bits (1281), Expect = 1.770e-174
Identity = 271/284 (95.42%), Postives = 274/284 (96.48%), Query Frame = 3 
Query:   96 MDFPGAAEDPEQRSFIDPVWLQQWGLGPKNALDYFALSPFYDKACNNEQCRMQDVDPREGLLNLTGLEFMLVELPPEMSFLPPGQPAPAGPQPRRLFVIKKQVRKSPSSVEVHAIYYIMEGVIYQAPTVQKLIKSRLNKFTHHLNNAFVELSKLAKLRDSGGGYDWAWQKEAKDLQEKAEAAEGVGVAEEDRDAKAALKLSMDNILMGLVEKYIDGDGEGKEGKKPAARGAKRKADGEAATSASLDAXXXXXXXXXXXXXXXX-----TTGGMTKTLGATKPTR 932
            M+FPGAAEDPEQRSFIDPVWLQQWGLGP+NALDYFALSPFYDKACNNEQCRMQ VDPREGLLNLTGLEFMLVELPPEMSFLPPGQPAPAGPQPRRLFVIKKQVRKSPSSVEV AIYYIMEGVIYQAPTVQKLIKSRLNKFTHHLNNAFVELSKLAKLRDSGGGYDWAWQKEAKDLQEKAEAAEGVGVAEEDRDAKAALKLSMDNILMGLVEKYIDGDGEGKEGK+PAARGAKRKADGEA TSASLDA XXXXXXXXXXXXXXX     TTGGMTKTL ATKPTR
Sbjct:    1 MEFPGAAEDPEQRSFIDPVWLQQWGLGPQNALDYFALSPFYDKACNNEQCRMQSVDPREGLLNLTGLEFMLVELPPEMSFLPPGQPAPAGPQPRRLFVIKKQVRKSPSSVEVQAIYYIMEGVIYQAPTVQKLIKSRLNKFTHHLNNAFVELSKLAKLRDSGGGYDWAWQKEAKDLQEKAEAAEGVGVAEEDRDAKAALKLSMDNILMGLVEKYIDGDGEGKEGKEPAARGAKRKADGEAVTSASLDAAXXXXXXXXXXXXXXXXXXTPTTGGMTKTLAATKPTR 284
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BLAST of mRNA_E-siliculosus-1a_F_contig1.26.1 vs. uniprot
Match: D7G6X0_ECTSI (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6X0_ECTSI)

HSP 1 Score: 304 bits (778), Expect = 4.960e-100
Identity = 146/150 (97.33%), Postives = 147/150 (98.00%), Query Frame = 3 
Query:   96 MDFPGAAEDPEQRSFIDPVWLQQWGLGPKNALDYFALSPFYDKACNNEQCRMQDVDPREGLLNLTGLEFMLVELPPEMSFLPPGQPAPAGPQPRRLFVIKKQVRKSPSSVEVHAIYYIMEGVIYQAPTVQKLIKSRLNKFTHHLNNAFVE 545
            MDFPGAAEDPEQRSFIDPVWLQQWGLGP+NALDYFALSPFYDKACNNEQCRMQ VDPREGLLNLTGLEFMLVELPPEMSFLPPGQPAPAGPQPRRLFVIKKQVRKSPSSVEV AIYYIMEGVIYQAPTVQKLIKSRLNKFTHHLNNAF E
Sbjct:    1 MDFPGAAEDPEQRSFIDPVWLQQWGLGPENALDYFALSPFYDKACNNEQCRMQGVDPREGLLNLTGLEFMLVELPPEMSFLPPGQPAPAGPQPRRLFVIKKQVRKSPSSVEVQAIYYIMEGVIYQAPTVQKLIKSRLNKFTHHLNNAFGE 150
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BLAST of mRNA_E-siliculosus-1a_F_contig1.26.1 vs. uniprot
Match: A0A835YVL9_9STRA (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVL9_9STRA)

HSP 1 Score: 164 bits (415), Expect = 2.850e-44
Identity = 96/216 (44.44%), Postives = 125/216 (57.87%), Query Frame = 3 
Query:  117 EDPEQRSFIDPVWLQQWGLGPKNALDYFALSPFYDKACNNEQCRMQDV-DPREGLLNLTGLEFMLVELPPEMSFLP-PGQPAPAGPQPRRLFVIKKQVRKSPSSVEVHAIYYIMEGVIYQAPTVQKLIKSRLNKFTHHLNNAFVELSKLAKLRDSGGGYDWAWQKEAKDLQEKAEAAEGVGVAE-EDRDAKAALKLSMDNILMGLVEKYIDGDGEG 755
            ED  Q SF D +WL+ + LGP+ A+DYFALSPFYD+  NNE CRMQ + D    +  +TG+E+++ ELPPE   LP PG P    PQPR L VIKKQ RKS +  EV  +YYIM+G IYQAP+   LI SRL K    L+ +F  L  L    ++ G YDW W  EA                  + + A +A++   D IL+ LV +Y   +GEG
Sbjct:   16 EDQTQLSFQDTMWLRSFYLGPETAIDYFALSPFYDRTSNNELCRMQGLTDHVAAMQTMTGIEYVVEELPPETDELPEPGAP----PQPRHLMVIKKQYRKSKTQAEVRGVYYIMDGTIYQAPSALALITSRLQKAAFMLSESFAALRALPA-HNARGAYDWPWNAEAXXXXXXXXXXXXXXXXXXQSQAALSAVRAGADAILLQLVSRYARSEGEG 226
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1.26.1 vs. uniprot
Match: M4C4K5_HYAAE (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C4K5_HYAAE)

HSP 1 Score: 121 bits (303), Expect = 4.160e-28
Identity = 74/212 (34.91%), Postives = 119/212 (56.13%), Query Frame = 3 
Query:  111 AAEDPEQRSFIDPVWLQQWGLGPKNALDYFALSPFYDKACNNEQCRMQDVDPREGLLNLTGLEFMLVELPPEMSFLPPGQPAPAGPQPRRLFVIKKQVRKSPSSVEVHAIYYIMEGVIYQAPTVQKLIKSRLNKFTHHLNNAFVELSKLAKLRDSGGGYDWAWQKEAKDLQEKAEAAEGVGVAEEDRDAKAALKLS----MDNILMGLVEKY 734
            A  D    SF D VWLQ + L P+  L YFALSPFYD++CNNE+ +MQ +   + L NL G+E+ L+             P  A   P++L+VI+KQ R S + VE  A+YY+++G +YQAP +  ++ SRL K ++ +N AF  L+   +   + G   +AW   +KD +E    +E + +  + +  K   +      +D+IL+ L++K+
Sbjct:    5 AHADDYNASFRDTVWLQSFPLNPQTVLHYFALSPFYDRSCNNERLKMQRLG-LDQLKNLRGIEYELL-------------PNAAKQLPQQLYVIRKQRRSSRTQVEPLAVYYVLDGTVYQAPNIHAMLTSRLKKCSYRINKAFHGLAAGVRFSPTEG---YAWDFSSKDKKEPVIPSEQLQLKLKQKYEKMEKQRENSARVDSILIQLMKKH 199
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BLAST of mRNA_E-siliculosus-1a_F_contig1.26.1 vs. uniprot
Match: A0A2R5GW25_9STRA (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GW25_9STRA)

HSP 1 Score: 120 bits (300), Expect = 1.750e-27
Identity = 69/159 (43.40%), Postives = 101/159 (63.52%), Query Frame = 3 
Query:  135 SFIDPVWLQQWGLGPKNALDYFALSPFYDKACNNEQCRMQDVDPREGLLNLTGLEFMLVELPPEMSFLPPGQPAPAGPQPRRLFVIKKQVRKSPSSVEVHAIYYIMEGVIYQAPTVQKLIKSRLNKFTHHLNNAFVELSKLAKLRDSGGGYDWAWQKEA 611
            SF+D  W++ +GL   N LDYFA SPFYD +CNNE  RMQ++          GLE ML ++PP + +    +  P+G +P  LF++ KQ R S + V   A+YYI++ VIYQAP++Q+LI +RL+K T+HL NAF ++ K A+   S G + W +  +A
Sbjct:   65 SFLDDNWIRAFGLSAHNVLDYFACSPFYDTSCNNEILRMQNL----------GLE-MLADMPPGIEY----RLLPSGHEPV-LFIVVKQERASKTVVRRQALYYILDKVIYQAPSLQRLIATRLSKSTNHLQNAFDQMVKAARYAPSQG-FTWHFDGDA 206
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BLAST of mRNA_E-siliculosus-1a_F_contig1.26.1 vs. uniprot
Match: D0NQQ4_PHYIT (Mediator of RNA polymerase II transcription subunit 6 n=15 Tax=Peronosporaceae TaxID=4777 RepID=D0NQQ4_PHYIT)

HSP 1 Score: 117 bits (293), Expect = 7.830e-27
Identity = 72/209 (34.45%), Postives = 116/209 (55.50%), Query Frame = 3 
Query:  120 DPEQRSFIDPVWLQQWGLGPKNALDYFALSPFYDKACNNEQCRMQDVDPREGLLNLTGLEFMLVELPPEMSFLPPGQPAPAGPQPRRLFVIKKQVRKSPSSVEVHAIYYIMEGVIYQAPTVQKLIKSRLNKFTHHLNNAFVELSKLAKLRDSGGGYDWAWQKEAKDLQEKAEAAEGVGVAEEDRDAKAALKLS----MDNILMGLVEKY 734
            D    SF D VWLQ + L  +  L YFALSPFYD++CNNE+ +MQ +   + L NL G+E+ L+             P  A   P++LF+I+KQ R   + VE  AIYY+++G +YQAP +  ++ SRL K ++ +N AF  L+   +   + G   +AW   +KD +E    +E + +  + +  K   +      +D+IL+ L++K+
Sbjct:    8 DDYNASFRDTVWLQSFPLNAQTVLHYFALSPFYDRSCNNERLKMQRLG-LDQLKNLRGVEYELL-------------PNTAKQMPQQLFIIRKQRRSGRTQVEPLAIYYVLDGTVYQAPNIHAMLTSRLKKCSYRVNKAFHGLAAGVRFSPTEG---YAWDFSSKDKKEPVIPSEQLQLKLKQKYEKMEKQRENSARVDSILIQLMKKH 199
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1.26.1 vs. uniprot
Match: A0A484EGT8_BRELC (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EGT8_BRELC)

HSP 1 Score: 111 bits (278), Expect = 2.070e-25
Identity = 61/158 (38.61%), Postives = 91/158 (57.59%), Query Frame = 3 
Query:  120 DPEQRSFIDPVWLQQWGLGPKNALDYFALSPFYDKACNNEQCRMQDVDPREGLLNLTGLEFMLVELPPEMSFLPPGQPAPAGPQPRRLFVIKKQVRKSPSSVEVHAIYYIMEGVIYQAPTVQKLIKSRLNKFTHHLNNAFVELSKLAKLRDSGGGYDW 593
            D    SF D VWLQ + L  +  L YFALSPFYD++CNNE+ +MQ +   E L NL G+E+ L+             P  A   P++L++I+KQ R   + VE  A+YY+++G +YQAP +  ++ SRL K ++ +N AF  L+   +   + G Y W
Sbjct:    8 DDYNASFRDTVWLQSFPLNAQTVLHYFALSPFYDRSCNNERLKMQRLG-LEQLKNLRGVEYELL-------------PNAAKQLPQQLYIIRKQRRNGRTQVEPLAVYYVLDGTVYQAPNIHAMLTSRLKKCSYRVNKAFHGLAAGVRFSPTEG-YAW 150
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1.26.1 vs. uniprot
Match: A9RVG1_PHYPA (Mediator of RNA polymerase II transcription subunit 6 (Fragment) n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9RVG1_PHYPA)

HSP 1 Score: 111 bits (277), Expect = 3.370e-25
Identity = 73/201 (36.32%), Postives = 103/201 (51.24%), Query Frame = 3 
Query:  135 SFIDPVWLQQWGLGPKNALDYFALSPFYDKACNNEQCRMQDVDPRE--GLLNLTGLEFMLVELPPEMSFLPPGQPAPAGPQPRRLFVIKKQVRKSPSSVEVHAIYYIMEGVIYQAPTVQKLIKSRLNKFTHHLNNAFVELSKLAKLRDSGGGYDWAWQKEAKDLQEKAEAAEGVGVAEEDRDAKAALKLSMDNILMGLVEK 731
            SF D +WL  + L      DYFALSPFYD+ CNNEQ RM+ + P +   L   TG+E++L E                  Q   LFVI+KQ R  P  V   A YY+++G IYQAP +  +I SR+ +  +H+ NAF + S  AKL   G G     + +  D+Q K    + V       D K  +++  D+IL G++ K
Sbjct:    9 SFRDQLWLSAYPLDRNLVFDYFALSPFYDRTCNNEQLRMEAIHPLDMTHLSKKTGMEYILHEA-----------------QEPHLFVIRKQKRDGPEKVSAQAAYYVLDGSIYQAPHLYNVIGSRVVRSLYHITNAFAQAS--AKLEKIGTG-----EADPADVQVKQSTTKFV-------DMKEVMRV--DSILAGIMRK 176
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BLAST of mRNA_E-siliculosus-1a_F_contig1.26.1 vs. uniprot
Match: A0A0N7L744_PLAHL (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L744_PLAHL)

HSP 1 Score: 110 bits (275), Expect = 3.380e-25
Identity = 60/152 (39.47%), Postives = 90/152 (59.21%), Query Frame = 3 
Query:   96 MDFPGAAEDPEQRSFIDPVWLQQWGLGPKNALDYFALSPFYDKACNNEQCRMQDVDPREGLLNLTGLEFMLVELPPEMSFLPPGQPAPAGPQPRRLFVIKKQVRKSPSSVEVHAIYYIMEGVIYQAPTVQKLIKSRLNKFTHHLNNAFVELS 551
            M+  G  +D    SF D VWLQ + L  +  L YFALSPFYD++CNNE+ +MQ +   + L NL G+E+ L+             P  A   P++L++I+KQ R   + VE  AIYY+++G +YQAP +  ++ SRL K ++ +N AF  L+
Sbjct:    1 MEVAGHVDD-YNASFRDTVWLQSFPLNAQTVLHYFALSPFYDRSCNNERLKMQRLG-LDQLKNLRGVEYELL-------------PNAAKQLPQQLYIIRKQRRNGRTQVEPLAIYYVLDGTVYQAPNIHAMLTSRLKKCSYRINKAFHGLA 137
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1.26.1 vs. uniprot
Match: K3WSB9_GLOUD (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WSB9_GLOUD)

HSP 1 Score: 112 bits (280), Expect = 8.450e-25
Identity = 68/209 (32.54%), Postives = 116/209 (55.50%), Query Frame = 3 
Query:  120 DPEQRSFIDPVWLQQWGLGPKNALDYFALSPFYDKACNNEQCRMQDVDPREGLLNLTGLEFMLVELPPEMSFLPPGQPAPAGPQPRRLFVIKKQVRKSPSSVEVHAIYYIMEGVIYQAPTVQKLIKSRLNKFTHHLNNAFVELSKLAKLRDSGGGYDWAWQKEAKDLQEKAEAAEGVGVAEEDRDAKAALKLS----MDNILMGLVEKY 734
            D    SF D +WLQ + L  +  + YFALSPFYD++CNNE+ +MQ +   + L N+ G+E+ ++             P  A   P++LF+I+KQ R   + VE  AIYY+++G +YQAP +  ++ SRL K ++ +N AF  L+   +   + G   +AW   +KD +E    +E + +  + +  K   +      +D+IL+ L++K+
Sbjct:    8 DDYNASFRDTMWLQSFPLNAQTVIHYFALSPFYDRSCNNERLKMQRLG-LDQLKNMRGIEYEVL-------------PNTAKQLPQQLFLIRKQRRSGRTQVEPLAIYYVLDGTVYQAPNIHAMLTSRLKKCSYRVNKAFHTLAAGVRFSPTEG---YAWDFSSKDKKEPIIPSEQLQLKLKQKYEKIEKQREHSARVDSILIQLMKKH 199
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1.26.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KKW4_9PHAE1.770e-17495.42Mediator of RNA polymerase II transcription subuni... [more]
D7G6X0_ECTSI4.960e-10097.33Mediator of RNA polymerase II transcription subuni... [more]
A0A835YVL9_9STRA2.850e-4444.44Mediator of RNA polymerase II transcription subuni... [more]
M4C4K5_HYAAE4.160e-2834.91Mediator of RNA polymerase II transcription subuni... [more]
A0A2R5GW25_9STRA1.750e-2743.40Mediator of RNA polymerase II transcription subuni... [more]
D0NQQ4_PHYIT7.830e-2734.45Mediator of RNA polymerase II transcription subuni... [more]
A0A484EGT8_BRELC2.070e-2538.61Mediator of RNA polymerase II transcription subuni... [more]
A9RVG1_PHYPA3.370e-2536.32Mediator of RNA polymerase II transcription subuni... [more]
A0A0N7L744_PLAHL3.380e-2539.47Mediator of RNA polymerase II transcription subuni... [more]
K3WSB9_GLOUD8.450e-2532.54Mediator of RNA polymerase II transcription subuni... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1contigE-siliculosus-1a_F_contig1:186137..190539 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size840
Model size1280
Exons5
Ec32 orthologEc-01_011940.1
Ec32 ortholog descriptionMediator complex, subunit Med6
Hectar predicted targeting categoryother localisation
BRITEko00000,ko01000,ko03021
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.K
EC3.6.3.1
EggNOG OGsCOG5097@1,KOG3169@2759
EggNOG free text desc.RNA polymerase II transcription coactivator activity involved in preinitiation complex assembly
GOsGO:0000151,GO:0000428,GO:0001128,GO:0003674,GO:0003676,GO:0003677,GO:0003712,GO:0003713,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005737,GO:0006139,GO:0006351,GO:0006352,GO:0006355,GO:0006357,GO:0006366,GO:0006367,GO:0006464,GO:0006725,GO:0006807,GO:0007275,GO:0007399,GO:0007406,GO:0008134,GO:0008150,GO:0008152,GO:0008285,GO:0009058,GO:0009059,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0010721,GO:0016043,GO:0016070,GO:0016567,GO:0016591,GO:0016592,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0019827,GO:0022008,GO:0022607,GO:0030154,GO:0030880,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032446,GO:0032501,GO:0032502,GO:0032774,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0036211,GO:0042127,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044798,GO:0045595,GO:0045596,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050768,GO:0050789,GO:0050793,GO:0050794,GO:0051093,GO:0051123,GO:0051171,GO:0051173,GO:0051239,GO:0051241,GO:0051252,GO:0051254,GO:0051960,GO:0051961,GO:0055029,GO:0060255,GO:0060284,GO:0061695,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0070647,GO:0070847,GO:0070897,GO:0071704,GO:0071824,GO:0071840,GO:0072091,GO:0080090,GO:0090304,GO:0090575,GO:0097159,GO:0097659,GO:0098727,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1902494,GO:1902680,GO:1902692,GO:1903506,GO:1903508,GO:1990234,GO:2000026,GO:2000112,GO:2000177,GO:2000178,GO:2000647,GO:2001141
KEGG koko:K01530,ko:K15128
Preferred nameMED6
Seed eggNOG ortholog2880.D7G6X0
Seed ortholog evalue7.7e-80
Seed ortholog score303.9
Taxonomic scopeEukaryota
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927500.4211917-UTR-E-siliculosus-1a_F_contig1:186136..1864811622927500.4211917-UTR-E-siliculosus-1a_F_contig1:186136..186481Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1 186137..186481 -
1696318552.968699-UTR-E-siliculosus-1a_F_contig1:186136..1864811696318552.968699-UTR-E-siliculosus-1a_F_contig1:186136..186481Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1 186137..186481 -
1622927500.5328841-UTR-E-siliculosus-1a_F_contig1:190444..1905391622927500.5328841-UTR-E-siliculosus-1a_F_contig1:190444..190539Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1 190445..190539 -
1696318553.0260806-UTR-E-siliculosus-1a_F_contig1:190444..1905391696318553.0260806-UTR-E-siliculosus-1a_F_contig1:190444..190539Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1 190445..190539 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927500.4399061-CDS-E-siliculosus-1a_F_contig1:186481..1867001622927500.4399061-CDS-E-siliculosus-1a_F_contig1:186481..186700Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1 186482..186700 -
1696318552.980052-CDS-E-siliculosus-1a_F_contig1:186481..1867001696318552.980052-CDS-E-siliculosus-1a_F_contig1:186481..186700Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1 186482..186700 -
1622927500.4604752-CDS-E-siliculosus-1a_F_contig1:187430..1876061622927500.4604752-CDS-E-siliculosus-1a_F_contig1:187430..187606Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1 187431..187606 -
1696318552.9897223-CDS-E-siliculosus-1a_F_contig1:187430..1876061696318552.9897223-CDS-E-siliculosus-1a_F_contig1:187430..187606Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1 187431..187606 -
1622927500.4778118-CDS-E-siliculosus-1a_F_contig1:188158..1883031622927500.4778118-CDS-E-siliculosus-1a_F_contig1:188158..188303Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1 188159..188303 -
1696318552.9988008-CDS-E-siliculosus-1a_F_contig1:188158..1883031696318552.9988008-CDS-E-siliculosus-1a_F_contig1:188158..188303Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1 188159..188303 -
1622927500.493738-CDS-E-siliculosus-1a_F_contig1:188788..1888851622927500.493738-CDS-E-siliculosus-1a_F_contig1:188788..188885Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1 188789..188885 -
1696318553.0071454-CDS-E-siliculosus-1a_F_contig1:188788..1888851696318553.0071454-CDS-E-siliculosus-1a_F_contig1:188788..188885Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1 188789..188885 -
1622927500.5120156-CDS-E-siliculosus-1a_F_contig1:190241..1904441622927500.5120156-CDS-E-siliculosus-1a_F_contig1:190241..190444Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1 190242..190444 -
1696318553.0165565-CDS-E-siliculosus-1a_F_contig1:190241..1904441696318553.0165565-CDS-E-siliculosus-1a_F_contig1:190241..190444Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1 190242..190444 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1.26.1prot_E-siliculosus-1a_F_contig1.26.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1 186482..190444 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1.26.1

>prot_E-siliculosus-1a_F_contig1.26.1 ID=prot_E-siliculosus-1a_F_contig1.26.1|Name=mRNA_E-siliculosus-1a_F_contig1.26.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=280bp
MDFPGAAEDPEQRSFIDPVWLQQWGLGPKNALDYFALSPFYDKACNNEQC
RMQDVDPREGLLNLTGLEFMLVELPPEMSFLPPGQPAPAGPQPRRLFVIK
KQVRKSPSSVEVHAIYYIMEGVIYQAPTVQKLIKSRLNKFTHHLNNAFVE
LSKLAKLRDSGGGYDWAWQKEAKDLQEKAEAAEGVGVAEEDRDAKAALKL
SMDNILMGLVEKYIDGDGEGKEGKKPAARGAKRKADGEAATSASLDAASA
AATSTAAPSSATPTTGGMTKTLGATKPTR*
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mRNA from alignment at E-siliculosus-1a_F_contig1:186137..190539-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1.26.1 ID=mRNA_E-siliculosus-1a_F_contig1.26.1|Name=mRNA_E-siliculosus-1a_F_contig1.26.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4403bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1:186137..190539- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GACCAACACACAGCAGTGCACAGACTGCTGCAGCCAGGGAGTAAACCGCC
GGAAAGCAATCAACATCCTTGCAAGGAGAGACGGGTGCGGTCTAGATGGA
TTTCCCTGGAGCAGCAGAAGACCCAGAGCAAAGGTCGTTCATCGACCCGG
TGTGGTTGCAGCAGTGGGGACTTGGGCCGAAGAACGCTCTGGACTACTTC
GCTCTCAGCCCTTTCTACGACAAAGCATGCAACAACGAGCAGTGCAGGAT
GCAGGACGTGGATCCACGGGAAGGGCTGCTGAACCTAACCGGGCTAGAGT
GAGTGGCCTTGGGTGTGTGCCTTGACGTCGTGTGCTGTCGTGGGTTAGCT
GCTGTTAGCTGCTGCAGCTTGGGAGATCATGAATTGGCCGTTCTCTTGCC
CCAGTCTCCCGCCCGTTGGCGTGCGATCTTGTCCCTCCGCGACCCGTTGA
GCCGCTGCCGAAGTAGGCCTCTCATCTAGCAGCAGCCAGATGTGGGTGGG
TGCAGTTCGCATGAGGGTGCATGGCCCGCAACGTCTGTGTTGTTTCGCAA
TTCGCAAGGTTGTGCACTGCCCTGGGCAGCCTCGTTTGGTGGAAGGTAGC
CATATGATCCAGGCTGGGTATTTACCCACCGCTTTCGCCCCCTATCCAAC
ATCAGCAGTTTACCGCACATCTGCATATCTGCATATGCGTAGGCGCGAAG
TACTTTTGCTTACAGCATGTACCACAGTACGGCCGTGTGTCAAGTCAGCA
CGTTGGCGACGGCTCGAAGCGATCAAGGGTTGAACCGCCACGACCGAACA
ATGCAGAATGTATAGTATGACCTCAGCAGTATTAATAGTCTACATCCCGT
CTTGCGGTTTTACTGCTAGGTACAGGGTAGGCAACAGTAGCCCACCGATA
GGGTCCACCTGCAGAGTTTTGATGACTAGCTTCCGAGTGGGCACTACCCC
GCCACCCCTAAAAAAACCTACACATTGCCTCTAGCTCACATCTATGTACA
TACGGTACAGCTGATACGGTATTTCATCGCATTTCGGAACTGTTTTTTGG
GGTCAGACAAATGGCCCCGAGAAGGCGCGGGTCAGATTTTGATTACCAAT
ATTTACTGTAGCTCTGTGACGGCCCCACTTTCCGCCCACCGCTCAGACAA
ACCACCCTTCAAAATGTTTGAGGCATGGGTTGCTGTTCAGCTGCCTCATG
TTCTCAGCAGAAACAGAGTAGTAAACCATAAAAAGATGACACGCACGCCG
GGTACAGACTCGTCCGAACCTGATGTCAACACCACTGGACAGAACTGGTT
CTCCGACACGGGTGGTGTGTCTACATGTTGTATGTGGCGATCGAACAGCG
CTCGCTGTGGAACCGACAAGCGTGGGATGAGACAAGGTTCACCTGTCTTC
TTGCCAACAACCAATTCAGGAGAACACCCAGACCATGAGCCGAAACCCCC
CATTGCCTCTTGTTGGCCAAGAAAAATGTGTACGTTATTTAGTGTACACC
TGTGCCTAACCCCAGCAAAGCGTTGCAAGTAGAGTGTGCTACTGTTCAAA
GCAAAGCCAACGCGAAACCACTTGCGAGAAGGCACAGCTGGGTGTACTGA
GTGTATTCTTCTCCTTGGTGGACGTACTGCTGTGTACCGTGTTCTGCGAA
TTAGGTTCATGTTGGTGGAGCTCCCACCAGAAATGTCTTTCTTGCCACCG
GGGCAACCAGCTCCAGCCGGGCCGCAGCCTCGACGTCTCTTCGTAATCAA
GGTGAACCGTGTTGTGCTTCCGCCACCTTGCGCGAGGCGTATGTACCTCG
TCGGCACTGTCTGCTGCCTACTGCCGGGTTTAGTTGCTAGGTGACGTACC
ATGTGGGCGGTTACGAACGAACCTGCCGCAGCAGCAACATGCAGCATGCA
GCCTTCGAGTCCGATGGGAGTCGGATGGACAACCGTGATCGGAGGGACAC
ACCACCGTGCGCAGAATTCTCCAGTATTCCATCTGGTGGCGGTACCACCT
CGTTGATAGTCCATCAAGCGATCCTGGATAGTGTACATCAGCTCAGCACG
GCGCATCCGTATGACCACGGAGTCATGTTGTAAGGCATACAGCAGCGGTC
AGCGCTCGCACTTTCCAAGTATCAACTATCTGGTACCACCGCTTTGCGCT
GATCACTGGCACAGCGTATCGTGTAGTGCCCTGCCTAAAACAAGCTAACC
AACAAGCAAAACGTCGCGATTTTTTCCCCTTCCCAGAAACAAGTACGCAA
GAGCCCGAGTTCGGTTGAGGTCCACGCGATCTACTACATCATGGAGGGCG
TCATCTACCAAGCTCCCACGGTGCAAAAGCTCATCAAGTCTCGTCTAAAC
AAGTTCACCCACCATCTCAACAACGCCTTTGGTGAGGCCGGCCTCCAACC
CGACTGGTCGTTTCATTCTTAAGGCGGTGTGGTGAGACCTGATCTCTGCA
TTTGAATATGTAGAGTCGTTCATCAGTTTGTTGGTGGAAGCTTCTGTTGT
GCCGCACGCTGACCCGAGGGCTGGCGGTCGAGCATGTGTTGACGTTAGAC
AGGTTGGTGTGGATAATGCCTGGAGGTACTATTGGCCTCCTCGTCTTTTA
GCTGCATGTGTTTCTCGAAATCGTGACCTTTCGTTGTTTGGCGAGAGGAA
CATATAATTTTCCCATCTGAAGTGGACATTCGCCTATCGCATCGCTCGAG
GTTGCCGGTGAAGGAGGCTACTATATTGCTGTCAGTGGAATGCAGACTCC
CCATGATCATATCCCTCATCATTATGTGCACCGCTGTGTATGCGCTTCAA
CAACTTAGAGCACAATCACCATGGAAGGTCGGAGAGCCGGGAGTTGGCCC
CAACAACTCCCCGATACTAGTGCTCTTTCTTGCCCGTTCTGTTGTGACCG
CCTCCACTGTTATCTTGGAACTCCCCTTTCCAGTGGAGTTGTCCAAGCTG
GCGAAGCTGAGAGACTCTGGCGGGGGCTACGACTGGGCTTGGCAGAAGGA
GGCTAAAGATCTGCAGGAGAAGGCAGAGGCAGCCGAAGGTGTTGGTGTGG
CAGAGGAAGACAGAGACGCGAAAGCGGCCCTCAAGCTTTCCATGGACAAC
ATCCTCATGGTGAGCCATACCAATATGTACTATGTAGTATGTATGAGAGG
TGAAGCAACATACGTTTTGTGGCGTGGTTGTGGTTGGTGTCCTTGGTGTC
CATACGGAAGTGAGGGTGGGTCATCTTGCACCGCGAACAGCTCGAGTTGT
TCAAAACCATTATGCACAGAGCATGCTCGTTGTGGGCTTTACCGTCACTG
GAGGCTTTTTGTTTCTTTTTGCCCGAGAAATCGCCTGGCGGTGTTTGCGA
CTAACTGGGAACTTGGGAGCGTTGCAGACAGCGCCACCGCGTAAGTATGA
ATTTGGTCGTTCAACACTTGTGCCCCACCCCACACTCAAACCTATGATGG
TACATTTTGCTTTCCCTAGAGCGAATGAGGAGCGAGCCTCGGGAAAAATA
AGAGGTTCGGAAATGGTAGCAGCGTCTGTATTTGAATCGATGCCAGTTTG
TTGCATTTGAGAGGGACCATGCATCCTCGGCCTTTTCTCGAAAGTCGTCG
ATGCAACACCAGCGATGATGCCGCCACTTCACTCGAGGATGCACGTCTTT
GGCCTGTTACTGCTACTGCTAGAAGTCAGATATCCTTTTCTACACCTACC
AAGGGCGTTGTGATGGAAAATTCGTCTGGCATATATGTACGCGAAAAGGC
CATGACATCAGTCCTCGTCCGCTTGCCTAATTTTACGTTGGTGGTGCCAA
TGCCGACGCCATTGTCTGCTCTTGTTCGTGCTATGCTAGGGTCTGGTGGA
GAAATACATCGACGGAGACGGGGAGGGCAAGGAAGGGAAGAAACCCGCCG
CTAGAGGGGCAAAGCGGAAGGCCGACGGCGAAGCCGCGACTAGCGCTTCT
CTCGATGCGGCAAGTGCTGCTGCTACCAGCACTGCTGCTCCCAGTAGTGC
CACACCAACGACGGGCGGGATGACGAAAACCCTTGGGGCAACGAAGCCCA
CTCGATGACACGTACAGTATGATGGCGGCGTTGTCGTGGAAAGGAGGTTT
TTAGGGGGGCTACTGCCTCAACAATTATACCACAGGGTGGCGTATAGTTA
TTCCTTGTGAGTCTAGAATTTTCGCCTTATTATTAGGTTTCGTGTGCAGC
GTTGGTTTTACTACTGTTTTTCGTGGTCGGGTAGACGTTTTGTGCCTACA
GTGCAGCCTTCCTGCAAAAGGCGTGCAATACGCTGCCGTGTACTGTACAA
AGTTGATGTGACGTAATAATACTGGTGGTTTACGCTTGGTCCGAGGAGAA
TATCGGTGTGCATAAGCTCTGCAGATATTTGGCATGTCTACGGTGAAATA
ACC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1:186137..190539-

>mRNA_E-siliculosus-1a_F_contig1.26.1 ID=mRNA_E-siliculosus-1a_F_contig1.26.1|Name=mRNA_E-siliculosus-1a_F_contig1.26.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1680bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1:186137..190539- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGATTTCCCTGGAGCAGCAGAAGACCCAGAGCAAAGGTCGTTCATCGA
CCCGGTGTGGTTGCAGCAGTGGGGACTTGGGCCGAAGAACGCTCTGGACT
ACTTCGCTCTCAGCCCTTTCTACGACAAAGCATGCAACAACGAGCAGTGC
AGGATGCAGGACGTGGATCCACGGGAAGGGCTGCTGAACCTAACCGGGCT
AGAATGGATTTCCCTGGAGCAGCAGAAGACCCAGAGCAAAGGTCGTTCAT
CGACCCGGTGTGGTTGCAGCAGTGGGGACTTGGGCCGAAGAACGCTCTGG
ACTACTTCGCTCTCAGCCCTTTCTACGACAAAGCATGCAACAACGAGCAG
TGCAGGATGCAGGACGTGGATCCACGGGAAGGGCTGCTGAACCTAACCGG
GCTAGAGTTCATGTTGGTGGAGCTCCCACCAGAAATGTCTTTCTTGCCAC
CGGGGCAACCAGCTCCAGCCGGGCCGCAGCCTCGACGTCTCTTCGTAATC
AAGGTTCATGTTGGTGGAGCTCCCACCAGAAATGTCTTTCTTGCCACCGG
GGCAACCAGCTCCAGCCGGGCCGCAGCCTCGACGTCTCTTCGTAATCAAG
AAACAAGTACGCAAGAGCCCGAGTTCGGTTGAGGTCCACGCGATCTACTA
CATCATGGAGGGCGTCATCTACCAAGCTCCCACGGTGCAAAAGCTCATCA
AGTCTCGTCTAAACAAGTTCACCCACCATCTCAACAACGCCTTTGAAACA
AGTACGCAAGAGCCCGAGTTCGGTTGAGGTCCACGCGATCTACTACATCA
TGGAGGGCGTCATCTACCAAGCTCCCACGGTGCAAAAGCTCATCAAGTCT
CGTCTAAACAAGTTCACCCACCATCTCAACAACGCCTTTGTGGAGTTGTC
CAAGCTGGCGAAGCTGAGAGACTCTGGCGGGGGCTACGACTGGGCTTGGC
AGAAGGAGGCTAAAGATCTGCAGGAGAAGGCAGAGGCAGCCGAAGGTGTT
GGTGTGGCAGAGGAAGACAGAGACGCGAAAGCGGCCCTCAAGCTTTCCAT
GGACAACATCCTCATGTGGAGTTGTCCAAGCTGGCGAAGCTGAGAGACTC
TGGCGGGGGCTACGACTGGGCTTGGCAGAAGGAGGCTAAAGATCTGCAGG
AGAAGGCAGAGGCAGCCGAAGGTGTTGGTGTGGCAGAGGAAGACAGAGAC
GCGAAAGCGGCCCTCAAGCTTTCCATGGACAACATCCTCATGGGTCTGGT
GGAGAAATACATCGACGGAGACGGGGAGGGCAAGGAAGGGAAGAAACCCG
CCGCTAGAGGGGCAAAGCGGAAGGCCGACGGCGAAGCCGCGACTAGCGCT
TCTCTCGATGCGGCAAGTGCTGCTGCTACCAGCACTGCTGCTCCCAGTAG
TGCCACACCAACGACGGGCGGGATGACGAAAACCCTTGGGGCAACGAAGC
CCACTCGATGAGGTCTGGTGGAGAAATACATCGACGGAGACGGGGAGGGC
AAGGAAGGGAAGAAACCCGCCGCTAGAGGGGCAAAGCGGAAGGCCGACGG
CGAAGCCGCGACTAGCGCTTCTCTCGATGCGGCAAGTGCTGCTGCTACCA
GCACTGCTGCTCCCAGTAGTGCCACACCAACGACGGGCGGGATGACGAAA
ACCCTTGGGGCAACGAAGCCCACTCGATGA
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