mRNA_E-siliculosus-1a_F_contig169.3863.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig169.3863.1 vs. uniprot
Match: D8LDF1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDF1_ECTSI) HSP 1 Score: 1066 bits (2758), Expect = 0.000e+0 Identity = 526/537 (97.95%), Postives = 530/537 (98.70%), Query Frame = 1
Query: 1 MNIGTGPEADFRDGCLSLRASTLDKIRASQSPGFSGQVPNGLGRQPLSNFRTQPVVGWGHYTDGINDKGRPVETLNGKNTPGPQYELDKVTCGQQVQSRFKTAPTPVFGSSQRPPLNGEGCVSPGPMTATVNVSAQPPGPKYSMAGAPWRKKTKAPKSPGPGQYNVYGSLGEQKESTRTSFKGFGFGGSGIARDMALPSRKVPGPGHYSWHEKDRPSQPGGKFGQAPQRPQTREDLRPAPGQYSIPSTLGTTMDSRFRTVVAPGFGTPPPTDEQRPHSAAGRLGGGPGPGAYDVGRVDSLAVQKKPLSTEKSCLSFQIKPPTSVKPHASRERKLQELDPESLRRAFKSTRKGCRVPNVSFGVGPQRPVDNPGKCPGPQAYDPENLRRAVSACKSSPTRGVKFGTGPQRHNTAESDKSPGPNAGYFIPSTLGAQQTNSMFESVKTSSFGPPPNRSSRGTTPVVTPGPSDYNPTFSNMAQTTHALSFGGATPNSKGGGARGMPRRSSSPGPGAYSMGSGLGVQTSSKYPSSTGPSFRAR 1611
MNIGTGPEADFRDGCLSLRASTLDKIRASQSPGFSGQVPNGLGRQPLSNFRTQPVVGWGHYTDGINDKGRPVETLNGKNTPGPQYELDKVTCGQQVQSRFKTAPTPVFGSSQRPPLNGEGCVSPGPMTATVNVSAQPPGPKYSMAGAPWRKKTKAPKSPGPGQYNVYGSLGEQKESTRTSFKGFGFGGSG+ARDMALPSRKVPGPGHYSWHEKDRPSQPGGKFGQAPQRPQTR DLRPAPGQYSIPSTLGTTMDSRFRTVVAPGFGTPPP DEQRPHSAAGRLGGGPGPGAYDVGRVDSLAVQKKPLSTEKSCLSFQIKPPTSVKP+ SRERK+QELDPESLRRA KSTRKGCRVPNVSFGVGPQRPVDNPGKCPGPQAYDPENLRRAVSACKSSPTRGVKFGTGPQRHNTAESDKSPGPNAGYFIPSTLGAQQTNSMFESVKTSSFGPPPNRSSR TPVVTPGPSDYNPT SNMAQTTHALSFGGATPNSKGGGARGMPRRSSSPGPGAYS+GSGLGVQTSSKYPSSTGPSFRAR
Sbjct: 1 MNIGTGPEADFRDGCLSLRASTLDKIRASQSPGFSGQVPNGLGRQPLSNFRTQPVVGWGHYTDGINDKGRPVETLNGKNTPGPQYELDKVTCGQQVQSRFKTAPTPVFGSSQRPPLNGEGCVSPGPMTATVNVSAQPPGPKYSMAGAPWRKKTKAPKSPGPGQYNVYGSLGEQKESTRTSFKGFGFGGSGVARDMALPSRKVPGPGHYSWHEKDRPSQPGGKFGQAPQRPQTRGDLRPAPGQYSIPSTLGTTMDSRFRTVVAPGFGTPPPIDEQRPHSAAGRLGGGPGPGAYDVGRVDSLAVQKKPLSTEKSCLSFQIKPPTSVKPNVSRERKMQELDPESLRRAIKSTRKGCRVPNVSFGVGPQRPVDNPGKCPGPQAYDPENLRRAVSACKSSPTRGVKFGTGPQRHNTAESDKSPGPNAGYFIPSTLGAQQTNSMFESVKTSSFGPPPNRSSRRNTPVVTPGPSDYNPTSSNMAQTTHALSFGGATPNSKGGGARGMPRRSSSPGPGAYSIGSGLGVQTSSKYPSSTGPSFRAR 537
BLAST of mRNA_E-siliculosus-1a_F_contig169.3863.1 vs. uniprot
Match: A0A485KFJ8_9STRA (Aste57867_3477 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KFJ8_9STRA) HSP 1 Score: 60.8 bits (146), Expect = 1.620e-6 Identity = 63/237 (26.58%), Postives = 90/237 (37.97%), Query Frame = 1
Query: 253 YELDKVTCGQQVQSRFKTAPTPVFGSSQRPPLNGEGCVSPGPMTATVNVSAQPPGPKYSMAGAPWRKKTKAPKSPGPGQYNVYGSLGEQKESTRTSFKGFGFGGS---GIARDMALPSRKVPGPGHYSWH--EKDRPSQPGGKFGQAPQRPQTREDLRPAPGQYSIPSTLGTTMDSRFRTVVAPGFGTPPPTDEQRPHSAAGRLGGGPGPGAYDVGRVDSLAVQKKPLSTEKSCLSF 948
+E K +CG+QV SR +TAPTP+FG+S RP G+G KSPGPG Y V ++ ST + G G D+ + PGPG Y+ H + P P G+ + + P PG Y P L T + A P + S+ +G PG Y+ G V AV K+ +ST + ++
Sbjct: 38 FEDIKSSCGEQVDSRKRTAPTPIFGTSSRPKDPGDGS-----------------------------------KSPGPGAYQVPSAISRPVLSTMVTAPACSIAGREKFGSTSDLKSAAN-CPGPGDYTPHIVNPNEPIAPQFSLGKKWSKSLDGQSKVPGPGAYDTPENLLNTKTVLSTSKHATASSFPKVNRKPLMESSTADVG----PGQYNTGNV---AVGKQVVSTVTNAAAY 231
BLAST of mRNA_E-siliculosus-1a_F_contig169.3863.1 vs. uniprot
Match: T0QAC9_SAPDV (Uncharacterized protein n=2 Tax=Saprolegniaceae TaxID=4764 RepID=T0QAC9_SAPDV) HSP 1 Score: 58.2 bits (139), Expect = 1.180e-5 Identity = 59/190 (31.05%), Postives = 75/190 (39.47%), Query Frame = 1
Query: 253 YELDKVTCGQQVQSRFKTAPTPVFGSSQRPPLNGEGCVSPGPMTATVNVSAQPPGPKYSMAGAPWRKKTKAPKSPGPGQYNVYGSLGEQKESTRTSFKGFGFGGS---GIARDMALPSRKVPGPGHYSWH-----EKDRPSQPGGKFGQAPQRPQTREDLRPAPGQYSIPSTLGT-TMDSRFRTVVAPGF 795
Y+ K +CG+QV SR +TAPT FGSS R G+G + KSPGPG Y V SLG+ ST + G G D+ L + PGPG YS E + P GK P P + P PG Y P ++ T + S R+ AP F
Sbjct: 33 YDDIKSSCGEQVDSRKRTAPTTCFGSSSR----GQG--------------------------------SDGSKSPGPGAYQVPTSLGKPVLSTMRTAPACSVAGREKFGSVSDLKLAA-SCPGPGDYSSQVVNLKEANAPHYSLGKKWTTPAEPTKKS---PGPGAYDTPESISTKAVRSTNRSAPAPSF 182 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig169.3863.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig169.3863.1 >prot_E-siliculosus-1a_F_contig169.3863.1 ID=prot_E-siliculosus-1a_F_contig169.3863.1|Name=mRNA_E-siliculosus-1a_F_contig169.3863.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=538bp MNIGTGPEADFRDGCLSLRASTLDKIRASQSPGFSGQVPNGLGRQPLSNFback to top mRNA from alignment at E-siliculosus-1a_F_contig169:16509..27422- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig169.3863.1 ID=mRNA_E-siliculosus-1a_F_contig169.3863.1|Name=mRNA_E-siliculosus-1a_F_contig169.3863.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=10914bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig169:16509..27422- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig169:16509..27422- >mRNA_E-siliculosus-1a_F_contig169.3863.1 ID=mRNA_E-siliculosus-1a_F_contig169.3863.1|Name=mRNA_E-siliculosus-1a_F_contig169.3863.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=3228bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig169:16509..27422- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |