mRNA_E-siliculosus-1a_F_contig1685.3838.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1685.3838.1
Unique NamemRNA_E-siliculosus-1a_F_contig1685.3838.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1685.3838.1 vs. uniprot
Match: D8LBL7_ECTSI (AP complex subunit sigma n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBL7_ECTSI)

HSP 1 Score: 309 bits (792), Expect = 1.700e-102
Identity = 158/160 (98.75%), Postives = 159/160 (99.38%), Query Frame = 3 
Query:  216 MINFLLLISRQGKTRLTKWYQTYSAKEKARTVREITSTVLARAPKMCNFVEWRDKKIVYKRYASLFFVACIDQDDNELITLEKIHLFVEVLDRYFGNVCELDIIFNFHKAYYILDELFIGGELQESSKKEVLRVCSQMDELMEEAKEEAANGNQGPSRRR 695
            MINFLLLISRQGKTRLTKWYQTYSAKEKARTVREITSTVLARA KMCNFVEWRDKKIVYKRYASLFFVACIDQDDNELITLEKIHLFVEVLDRYFGNVCELDIIFNFHKAYYILDELFIGGELQESSKKEVLRVCSQMD+LMEEAKEEAANGNQGPSRRR
Sbjct:    1 MINFLLLISRQGKTRLTKWYQTYSAKEKARTVREITSTVLARALKMCNFVEWRDKKIVYKRYASLFFVACIDQDDNELITLEKIHLFVEVLDRYFGNVCELDIIFNFHKAYYILDELFIGGELQESSKKEVLRVCSQMDDLMEEAKEEAANGNQGPSRRR 160
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BLAST of mRNA_E-siliculosus-1a_F_contig1685.3838.1 vs. uniprot
Match: A0A7S4A8C4_9STRA (AP complex subunit sigma n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A8C4_9STRA)

HSP 1 Score: 265 bits (676), Expect = 6.040e-85
Identity = 130/156 (83.33%), Postives = 147/156 (94.23%), Query Frame = 3 
Query:  216 MINFLLLISRQGKTRLTKWYQTYSAKEKARTVREITSTVLARAPKMCNFVEWRDKKIVYKRYASLFFVACIDQDDNELITLEKIHLFVEVLDRYFGNVCELDIIFNFHKAYYILDELFIGGELQESSKKEVLRVCSQMDELMEEAKEE-AANGNQG 680
            MINFLLL+SRQGKTRLTKWY++Y+AKEKAR VREITSTVLARAPKMCNFVEWR+KKI+YKRYASLFF+ C+D +DNELITLE IHL+VEVLDRYFGNVCELDIIFNFHKAYYILDE+F+GGEL ESSKKEVL VC+QMDELMEE +E+ AA+G+ G
Sbjct:    1 MINFLLLVSRQGKTRLTKWYESYAAKEKARIVREITSTVLARAPKMCNFVEWRNKKIIYKRYASLFFIVCVDAEDNELITLEMIHLYVEVLDRYFGNVCELDIIFNFHKAYYILDEIFVGGELCESSKKEVLSVCAQMDELMEEREEDKAASGSSG 156
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BLAST of mRNA_E-siliculosus-1a_F_contig1685.3838.1 vs. uniprot
Match: A0A835Z7C9_9STRA (AP complex subunit sigma n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7C9_9STRA)

HSP 1 Score: 262 bits (669), Expect = 5.430e-84
Identity = 125/151 (82.78%), Postives = 144/151 (95.36%), Query Frame = 3 
Query:  216 MINFLLLISRQGKTRLTKWYQTYSAKEKARTVREITSTVLARAPKMCNFVEWRDKKIVYKRYASLFFVACIDQDDNELITLEKIHLFVEVLDRYFGNVCELDIIFNFHKAYYILDELFIGGELQESSKKEVLRVCSQMDELMEEAKEEAAN 668
            M+NFLLL+SRQGKTRLTKWY+ Y++KEKAR VREIT+ VLAR PKMCNF+EWRDKKIVYKRYASLFFVAC+D+DDNELITLE+IHL+VEVLDRYFGNVCELDIIFNFHKAYYILDELFIGGELQESSKKEVLRVC Q+D+LME+ +++ ++
Sbjct:    1 MLNFLLLVSRQGKTRLTKWYEAYTSKEKARIVREITTLVLARPPKMCNFLEWRDKKIVYKRYASLFFVACVDRDDNELITLEQIHLYVEVLDRYFGNVCELDIIFNFHKAYYILDELFIGGELQESSKKEVLRVCGQIDDLMEDVRDDGSS 151
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BLAST of mRNA_E-siliculosus-1a_F_contig1685.3838.1 vs. uniprot
Match: A0A7S2SD76_9STRA (AP complex subunit sigma n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SD76_9STRA)

HSP 1 Score: 257 bits (656), Expect = 1.020e-81
Identity = 123/153 (80.39%), Postives = 143/153 (93.46%), Query Frame = 3 
Query:  216 MINFLLLISRQGKTRLTKWYQTY-SAKEKARTVREITSTVLARAPKMCNFVEWRDKKIVYKRYASLFFVACIDQDDNELITLEKIHLFVEVLDRYFGNVCELDIIFNFHKAYYILDELFIGGELQESSKKEVLRVCSQMDELMEEAKEEAANG 671
            MINF+LLISRQGKTRLTKWY++Y S KEKAR VREIT+ VL+R PK+CNF+EWRDKK++YKRYASLFFVAC+D++DNEL+TLE IHLFVE+LDRYFGNVCELDIIFNFHKAYYILDELFI GELQESSKKEVL VC+QMDE+M+E+K+E  +G
Sbjct:   14 MINFMLLISRQGKTRLTKWYESYGSTKEKARIVREITAMVLSRPPKLCNFIEWRDKKVIYKRYASLFFVACVDKEDNELVTLEMIHLFVEILDRYFGNVCELDIIFNFHKAYYILDELFINGELQESSKKEVLSVCAQMDEMMDESKDEGTSG 166
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BLAST of mRNA_E-siliculosus-1a_F_contig1685.3838.1 vs. uniprot
Match: W7T3W8_9STRA (AP complex subunit sigma n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T3W8_9STRA)

HSP 1 Score: 256 bits (653), Expect = 1.850e-81
Identity = 122/148 (82.43%), Postives = 137/148 (92.57%), Query Frame = 3 
Query:  216 MINFLLLISRQGKTRLTKWYQTYSAKEKARTVREITSTVLARAPKMCNFVEWRDKKIVYKRYASLFFVACIDQDDNELITLEKIHLFVEVLDRYFGNVCELDIIFNFHKAYYILDELFIGGELQESSKKEVLRVCSQMDELMEEAKEE 659
            MINFLLL+SRQGKTRL+KWY+ Y+ KEKAR +RE+T+ VLARAPKMCNF+EWRDKK++YKRYASLFF+A +D  DNELITLE IHLFVE+LDRYFGNVCELDIIFNFHKAYYILDELFIGG LQESSK EVLRVCSQMDELMEE K++
Sbjct:    1 MINFLLLVSRQGKTRLSKWYKHYTTKEKARAIRELTNLVLARAPKMCNFIEWRDKKVIYKRYASLFFIAAVDSSDNELITLEMIHLFVEILDRYFGNVCELDIIFNFHKAYYILDELFIGGHLQESSKNEVLRVCSQMDELMEEQKDD 148
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BLAST of mRNA_E-siliculosus-1a_F_contig1685.3838.1 vs. uniprot
Match: A0A7S2XUT6_9STRA (AP complex subunit sigma n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XUT6_9STRA)

HSP 1 Score: 254 bits (650), Expect = 4.440e-81
Identity = 123/151 (81.46%), Postives = 136/151 (90.07%), Query Frame = 3 
Query:  216 MINFLLLISRQGKTRLTKWYQTYSAKEKARTVREITSTVLARAPKMCNFVEWRDKKIVYKRYASLFFVACIDQDDNELITLEKIHLFVEVLDRYFGNVCELDIIFNFHKAYYILDELFIGGELQESSKKEVLRVCSQMDELMEEAKEEAAN 668
            MINF+LLISRQGKTRLTKWY +Y  KEKAR +REITS VL R PKMCNF+EW+DKKIVYKRYASLFFV CID+ DNELITLE IHL+VEVLDRYFGNVCELDIIFNFHKAYYILDELFI GELQES K+EVLR+C QMD++MEE KE+ +N
Sbjct:    1 MINFMLLISRQGKTRLTKWYDSYGTKEKARIMREITSMVLNRPPKMCNFIEWKDKKIVYKRYASLFFVVCIDKGDNELITLEMIHLYVEVLDRYFGNVCELDIIFNFHKAYYILDELFIAGELQESGKREVLRICGQMDDMMEEGKEDVSN 151
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BLAST of mRNA_E-siliculosus-1a_F_contig1685.3838.1 vs. uniprot
Match: A0A7S3LZF2_9STRA (AP complex subunit sigma n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3LZF2_9STRA)

HSP 1 Score: 249 bits (635), Expect = 1.770e-78
Identity = 117/149 (78.52%), Postives = 139/149 (93.29%), Query Frame = 3 
Query:  213 TMINFLLLISRQGKTRLTKWYQTYSAKEKARTVREITSTVLARAPKMCNFVEWRDKKIVYKRYASLFFVACIDQDDNELITLEKIHLFVEVLDRYFGNVCELDIIFNFHKAYYILDELFIGGELQESSKKEVLRVCSQMDELMEEAKEE 659
            TMINF+LL+SRQGKTRL+KW+   +AKEK R VRE+T+TVL+R PKMCNF+EW+DKK++YKRYASLFFVAC+D++DNELI LE+IHLFVEVLDRYFGNVCELDIIFNFHKAYYILDELFIGG LQE+SK EVLR+C+ MDE+M+E+KEE
Sbjct:   17 TMINFILLVSRQGKTRLSKWFVQMTAKEKTRAVRELTATVLSRPPKMCNFIEWQDKKVIYKRYASLFFVACVDKNDNELIVLEQIHLFVEVLDRYFGNVCELDIIFNFHKAYYILDELFIGGHLQETSKVEVLRICAAMDEMMDESKEE 165
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BLAST of mRNA_E-siliculosus-1a_F_contig1685.3838.1 vs. uniprot
Match: A0A812YG65_SYMMI (AP complex subunit sigma (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812YG65_SYMMI)

HSP 1 Score: 240 bits (613), Expect = 2.290e-75
Identity = 112/147 (76.19%), Postives = 135/147 (91.84%), Query Frame = 3 
Query:  219 INFLLLISRQGKTRLTKWYQTYSAKEKARTVREITSTVLARAPKMCNFVEWRDKKIVYKRYASLFFVACIDQDDNELITLEKIHLFVEVLDRYFGNVCELDIIFNFHKAYYILDELFIGGELQESSKKEVLRVCSQMDELMEEAKEE 659
            INF+LL+SRQGKTRLTKW+     K+K R+VRE+T  VL+R PK+CNF+EWRDKK+VYKRYASL+F+AC+D++DNELITLEKIHLFVEVLDRYFGNVCELDIIFNFHKAYYI+DELFIGG LQE+SK EVLR+C+ MDE+M+E+K+E
Sbjct:    1 INFILLVSRQGKTRLTKWFVQKEPKDKTRSVRELTGMVLSRPPKLCNFLEWRDKKVVYKRYASLYFIACVDKEDNELITLEKIHLFVEVLDRYFGNVCELDIIFNFHKAYYIMDELFIGGYLQETSKAEVLRICAAMDEMMDESKDE 147
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BLAST of mRNA_E-siliculosus-1a_F_contig1685.3838.1 vs. uniprot
Match: F0Y8T1_AURAN (AP complex subunit sigma n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y8T1_AURAN)

HSP 1 Score: 240 bits (613), Expect = 3.200e-75
Identity = 127/176 (72.16%), Postives = 142/176 (80.68%), Query Frame = 3 
Query:  216 MINFLLLISRQGKTRLTKWYQTYSAKEKARTVREITSTVLARAPKMCNFVEWR-DKKIVYKRYASLFFVAC--------------------IDQDDNELITLEKIHLFVEVLDRYFGNVCELDIIFNFHKAYYILDELFIGGELQESSKKEVLRVCSQMDELMEEAKEEAANGNQG 680
            MINF+LL+SRQGKTRLTKWY++YS KEKAR VRE  +TVLARAPKMCNF+EWR DKKIVYKRYASLFF+ C                    +D +DNELITLE IHLFVEVLDRYFGNVCELDIIFNFHKAYYILDELFI GEL+ESSKKEVL +C+QMDE+M+E+KEE  NG  G
Sbjct:    1 MINFMLLVSRQGKTRLTKWYESYSTKEKARIVRE--ATVLARAPKMCNFIEWRADKKIVYKRYASLFFICCGDRRRERAPRRRKLKFLPAGVDSEDNELITLEMIHLFVEVLDRYFGNVCELDIIFNFHKAYYILDELFIAGELEESSKKEVLSICAQMDEMMDESKEEG-NGKGG 173
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BLAST of mRNA_E-siliculosus-1a_F_contig1685.3838.1 vs. uniprot
Match: A0A024THD2_9STRA (AP complex subunit sigma n=12 Tax=Saprolegniaceae TaxID=4764 RepID=A0A024THD2_9STRA)

HSP 1 Score: 231 bits (590), Expect = 5.260e-72
Identity = 110/148 (74.32%), Postives = 130/148 (87.84%), Query Frame = 3 
Query:  216 MINFLLLISRQGKTRLTKWYQTYSAKEKARTVREITSTVLARAPKMCNFVEWRDKKIVYKRYASLFFVACIDQDDNELITLEKIHLFVEVLDRYFGNVCELDIIFNFHKAYYILDELFIGGELQESSKKEVLRVCSQMDELMEEAKEE 659
            MI+F+LL+SRQGKTRL+KWY T   K+KAR +RE+T+ VL R  K CNF+EW+D+KIVYKRYASL+FVACI +++NELITLE IHLFVEVLDRYFGNVCELDIIFNFHKAYYILDEL IGG LQE SKKE+LRVC Q ++ MEE+KE+
Sbjct:    1 MIDFMLLVSRQGKTRLSKWYSTVPLKDKARIIREVTTLVLGRPQKQCNFIEWKDQKIVYKRYASLYFVACISKEENELITLEVIHLFVEVLDRYFGNVCELDIIFNFHKAYYILDELLIGGNLQEPSKKEILRVCQQQEDFMEESKED 148
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1685.3838.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBL7_ECTSI1.700e-10298.75AP complex subunit sigma n=2 Tax=Ectocarpus TaxID=... [more]
A0A7S4A8C4_9STRA6.040e-8583.33AP complex subunit sigma n=1 Tax=Pelagomonas calce... [more]
A0A835Z7C9_9STRA5.430e-8482.78AP complex subunit sigma n=1 Tax=Tribonema minus T... [more]
A0A7S2SD76_9STRA1.020e-8180.39AP complex subunit sigma n=1 Tax=Rhizochromulina m... [more]
W7T3W8_9STRA1.850e-8182.43AP complex subunit sigma n=2 Tax=Monodopsidaceae T... [more]
A0A7S2XUT6_9STRA4.440e-8181.46AP complex subunit sigma n=1 Tax=Fibrocapsa japoni... [more]
A0A7S3LZF2_9STRA1.770e-7878.52AP complex subunit sigma n=1 Tax=Spumella elongata... [more]
A0A812YG65_SYMMI2.290e-7576.19AP complex subunit sigma (Fragment) n=1 Tax=Symbio... [more]
F0Y8T1_AURAN3.200e-7572.16AP complex subunit sigma n=1 Tax=Aureococcus anoph... [more]
A0A024THD2_9STRA5.260e-7274.32AP complex subunit sigma n=12 Tax=Saprolegniaceae ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1685contigE-siliculosus-1a_F_contig1685:1878..6406 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size483
Model size1213
Exons5
Ec32 orthologEc-27_003490.1
Ec32 ortholog descriptionClathrin assembly complex, small subunit
Hectar predicted targeting categorymitochondrion
BRITEko00000,ko00001,ko04131
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.U
EggNOG OGsCOG5030@1,KOG0934@2759
EggNOG free text desc.protein transport
GOsGO:0000139,GO:0000323,GO:0000902,GO:0000904,GO:0001654,GO:0001745,GO:0001751,GO:0001754,GO:0002376,GO:0002478,GO:0002495,GO:0002504,GO:0003008,GO:0003674,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005768,GO:0005773,GO:0005774,GO:0005794,GO:0005798,GO:0005802,GO:0005829,GO:0005886,GO:0005905,GO:0006605,GO:0006810,GO:0006886,GO:0006892,GO:0006896,GO:0006897,GO:0006898,GO:0006928,GO:0006935,GO:0007034,GO:0007275,GO:0007399,GO:0007409,GO:0007411,GO:0007423,GO:0007610,GO:0007611,GO:0007612,GO:0007632,GO:0008104,GO:0008150,GO:0008306,GO:0008542,GO:0008565,GO:0009314,GO:0009416,GO:0009605,GO:0009607,GO:0009615,GO:0009628,GO:0009653,GO:0009887,GO:0009888,GO:0009987,GO:0012505,GO:0012506,GO:0012510,GO:0015031,GO:0015833,GO:0016020,GO:0016032,GO:0016043,GO:0016192,GO:0016197,GO:0016482,GO:0019882,GO:0019884,GO:0019886,GO:0022008,GO:0030030,GO:0030117,GO:0030118,GO:0030119,GO:0030120,GO:0030121,GO:0030122,GO:0030125,GO:0030128,GO:0030130,GO:0030131,GO:0030132,GO:0030133,GO:0030135,GO:0030136,GO:0030139,GO:0030140,GO:0030154,GO:0030182,GO:0030276,GO:0030424,GO:0030658,GO:0030659,GO:0030660,GO:0030662,GO:0030665,GO:0030666,GO:0030669,GO:0031090,GO:0031175,GO:0031410,GO:0031982,GO:0031984,GO:0032501,GO:0032502,GO:0032588,GO:0032989,GO:0032990,GO:0032991,GO:0033036,GO:0033267,GO:0034613,GO:0036465,GO:0040011,GO:0042051,GO:0042147,GO:0042221,GO:0042330,GO:0042461,GO:0042462,GO:0042886,GO:0042995,GO:0043005,GO:0043195,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043679,GO:0044306,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044456,GO:0044459,GO:0044463,GO:0044464,GO:0045176,GO:0045184,GO:0045202,GO:0045334,GO:0045444,GO:0046530,GO:0046907,GO:0048002,GO:0048193,GO:0048468,GO:0048475,GO:0048513,GO:0048592,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048749,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0050690,GO:0050877,GO:0050885,GO:0050890,GO:0050896,GO:0050905,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051704,GO:0051707,GO:0060612,GO:0061448,GO:0061564,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0090596,GO:0097458,GO:0097485,GO:0097708,GO:0098588,GO:0098657,GO:0098791,GO:0098793,GO:0098796,GO:0098797,GO:0098805,GO:0098852,GO:0099504,GO:0120025,GO:0120036,GO:0120038,GO:0120039,GO:0150034
KEGG Pathwayko04142,map04142
KEGG koko:K12394,ko:K12395
Preferred nameAP1S2
Seed eggNOG ortholog2880.D8LBL7
Seed ortholog evalue3.3e-83
Seed ortholog score314.3
Taxonomic scopeEukaryota
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928185.2948225-UTR-E-siliculosus-1a_F_contig1685:1877..23921622928185.2948225-UTR-E-siliculosus-1a_F_contig1685:1877..2392Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1685 1878..2392 -
1696318838.4336503-UTR-E-siliculosus-1a_F_contig1685:1877..23921696318838.4336503-UTR-E-siliculosus-1a_F_contig1685:1877..2392Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1685 1878..2392 -
1622928185.403716-UTR-E-siliculosus-1a_F_contig1685:6191..64061622928185.403716-UTR-E-siliculosus-1a_F_contig1685:6191..6406Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1685 6192..6406 -
1696318838.491119-UTR-E-siliculosus-1a_F_contig1685:6191..64061696318838.491119-UTR-E-siliculosus-1a_F_contig1685:6191..6406Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1685 6192..6406 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928185.3097339-CDS-E-siliculosus-1a_F_contig1685:2392..25031622928185.3097339-CDS-E-siliculosus-1a_F_contig1685:2392..2503Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1685 2393..2503 -
1696318838.446032-CDS-E-siliculosus-1a_F_contig1685:2392..25031696318838.446032-CDS-E-siliculosus-1a_F_contig1685:2392..2503Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1685 2393..2503 -
1622928185.3299718-CDS-E-siliculosus-1a_F_contig1685:3093..32831622928185.3299718-CDS-E-siliculosus-1a_F_contig1685:3093..3283Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1685 3094..3283 -
1696318838.4534547-CDS-E-siliculosus-1a_F_contig1685:3093..32831696318838.4534547-CDS-E-siliculosus-1a_F_contig1685:3093..3283Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1685 3094..3283 -
1622928185.34157-CDS-E-siliculosus-1a_F_contig1685:4089..41931622928185.34157-CDS-E-siliculosus-1a_F_contig1685:4089..4193Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1685 4090..4193 -
1696318838.4607446-CDS-E-siliculosus-1a_F_contig1685:4089..41931696318838.4607446-CDS-E-siliculosus-1a_F_contig1685:4089..4193Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1685 4090..4193 -
1622928185.3725061-CDS-E-siliculosus-1a_F_contig1685:4969..50441622928185.3725061-CDS-E-siliculosus-1a_F_contig1685:4969..5044Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1685 4970..5044 -
1696318838.469577-CDS-E-siliculosus-1a_F_contig1685:4969..50441696318838.469577-CDS-E-siliculosus-1a_F_contig1685:4969..5044Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1685 4970..5044 -
1622928185.3878293-CDS-E-siliculosus-1a_F_contig1685:6188..61911622928185.3878293-CDS-E-siliculosus-1a_F_contig1685:6188..6191Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1685 6189..6191 -
1696318838.482683-CDS-E-siliculosus-1a_F_contig1685:6188..61911696318838.482683-CDS-E-siliculosus-1a_F_contig1685:6188..6191Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1685 6189..6191 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1685.3838.1prot_E-siliculosus-1a_F_contig1685.3838.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1685 2393..6191 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1685.3838.1

>prot_E-siliculosus-1a_F_contig1685.3838.1 ID=prot_E-siliculosus-1a_F_contig1685.3838.1|Name=mRNA_E-siliculosus-1a_F_contig1685.3838.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=161bp
MINFLLLISRQGKTRLTKWYQTYSAKEKARTVREITSTVLARAPKMCNFV
EWRDKKIVYKRYASLFFVACIDQDDNELITLEKIHLFVEVLDRYFGNVCE
LDIIFNFHKAYYILDELFIGGELQESSKKEVLRVCSQMDELMEEAKEEAA
NGNQGPSRRR*
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mRNA from alignment at E-siliculosus-1a_F_contig1685:1878..6406-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1685.3838.1 ID=mRNA_E-siliculosus-1a_F_contig1685.3838.1|Name=mRNA_E-siliculosus-1a_F_contig1685.3838.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4529bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1685:1878..6406- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TGTGTGTTGCACAGCAGCAGACAGAGAGACAGACACAGAGAACCCGGAGA
GGGAGGGAGGGAGAGCATACTGCGCGCCCACGTTGTTAAAGGTTGAACGT
GGTTTTTCCCCATTCTAAAGGAAGGAGCTGAAACGGACACATTGCCGGTG
GAGAGCGTGTCGGAATCTCTCCTGCTGTCTTTTTGTTCCGCCCAAGACGT
GCTGCACGCTCAACGATGGTGAGTGTCCCAGCTCCACCCTAGCTCCAATG
CTCGCATGAACTACTGCTGTAGGATGCTATGTACGCCCCGTATGTGTTGG
CGGGCATTCTCAATCGAAACACATTTTGTCGTCGGCACTGAAGTCACATC
TGCTATGCATACACAAATACTGTAAGATGCATACGGGGGGATAGGGAGGG
TGTGTGGCCTGTTGTTGGTGCCATGTAGGGTAACCCTCCGGCCACATGGC
AATGCCAACAGCAGCAGTGCACCTCCGTTTTAACGGATACAATCGAACCG
ATGATCGTCATTCGAGAAGAAGCAGGCAGACTTGGGAATCCCATACCGTT
ACCGGGGGCAACGTGTGCAAAGCTGTTACTGGGTATTGTAATAGTGCGTC
GACCCAACCTACCTGTAGACCATGGACTACCTCTGTACTGCTGTAGGTTT
ATGTAGAGCGACCGATAGACTCGATAGAGCGCCGTGGGTGTCCCTGAACG
GAGATAGAACCGCGGTCATGAAAGCAGGGGATTGTCAAGCAAATGACACA
AATCACGACCTCGGTTGCGTTTTGTGTGAAGGAACCTCCTGTGGTATCTT
CCGTTGGACGTTCTGCAACGAACGCATCATCCAACCAACAACCTACAGCA
GTAGCAGCATCCCAGGACCAGTAGTGGCAAACGTTCGCTACAGCACGACA
GCAGTGATTGATCGGTCTCTTTGTAGATAGGGCAAGAGGCCTTTTGACAG
GCAACAGACAAGGGCTACCTGTTCAGAAGCGCATTATCAGTGTAGTTGTA
GGAGTTGCAAGGTGCCTGGAGTGCACAGGTTTGGCTGCATTACAGCAGTA
CCGCCACATACGCGCCCAAAGGTGTCAGTACCAAGAGCTGCGAAAGCGCA
CACCACTTTTTGGCTCGGTCGACGGAGCCTCGTCTGTTTGACGAAGCTCT
CTGCAGGCACGCCTTCCACACCGCATGCTCTTCAGCTAACTATGGCCCAT
GTAACCCGGTTGTTTTTCTTGTTGTCACATCAAGCCAATTCCTCCCCACG
ACGACACAGGACGAGACGACTCTCACTGCCCCCAACGTCGTCGTTGTCGC
GCCTGCTGTCTCTTGTGTCCTTGGCTCCTCTCTCAATTCTCACCCCCGCT
CGGTGAACTCAGATTAACTTCTTGCTTCTCATCAGTCGACAAGGCAAGAC
ACGCCTGACCAAGTGGTATCAGACCTACTCGGCTAAGGTGAGAAGGGGAA
GAGACAGCCAGACGGTCGGAGGGACGGGGGGGTAGGGTAGGGACCGAGGG
CGGGCAGAGACGGAGGGAAGTATGTGAACAAGGACATCATGCGGCAGCGA
CCACGGCCAGCGGCGTTGCTGGTTGGCACGCGTCGTAGCTTTCGACAGGC
ATCACACATGGTTTTGAGAAAAGCAAAAGGGGGGAAACCATCTCCGTTTA
GGAGCAGCGGAGATAAGTCGCTTCGGACAATCGGTGGCATGGTATCGACA
CAACACGTCTACGCCAGTGTCGCAGCTACCCAGCACACCCGAAAAGAGTG
AAATGTTCACAACGTTCGCACATCATGACTTGCTCAAGAATGTCGACACG
AAACATAGATTAGAGTCCAAGAACGTTGTTGCTCTTGTCTCTTTTTTTTG
CTCTTCTAGCGGCAAAAGATTACAACGTGGGCACCCGCCCGTAGGGGTCA
AGAGCGGAGGTCTTGTGTGTATCCCCGGATCCACCGGCGTGGCTGAAGGA
AGACCGACACTGGATGCTGTCGGAAAGAGTAGATGGGATGAGCGAATGCC
ACGCAAGCGTTGTGTCTTTCACGGTTAAAACCGTGAGGGAGAAACCGGGT
AAGAGCCTGGGATGCCTTCTCCCATACGATCACAAAACAACACTACGATA
GGACCTCAACGATTATCTTGTATTTATGCATACATGTACAACAACCGCGA
TTGTCACAACGAAAACGATGGAAACGACGACGACGACAACGACGACGGCT
GTTACCACCGCAGGAGAAAGCGCGCACGGTGCGGGAGATCACGTCGACGG
TGCTGGCGCGCGCCCCCAAGATGTGCAACTTCGTGGAGTGGAGGGATAAG
AAGATTGTCTACAAGAGGTAAAGAAAAGACGATGCAAGACGAGTTCGCAT
GGCAAACATAGGTGTACAGACCATACCGAGTTTAAAGGTAGATGCTGGTG
TAAAAATGTAGTTGCGCAGATTGGATAGATGTTACTGATGTTTTGAGTCA
AACGAGTGCTGTGTTCGTCTTAAGGCAAACGTACGGCGAGGAATGGAACA
CCAACAACGAGTCGATCAAGTGGTACCGACACACGGCAGAGAGCGAGGAA
GACAATGCAGGAAGGAAGTGTGACTACCGCTTGGCTCTTCGCGCCAAACG
AGCCCGCCTGTAGTTGGCGGCGGCATCGCGTGTTTTGGAGTGCGCGATCA
TCTTGTTGTCCTGCCATCCTCTACTTTTCTTTGCTTCGCTGATCATCGGT
GGATGACAAGGACGGCCTATTCCTCGTGGGTGGTGCACCGTAACAACCCT
TTCCCCATCCCTCGATAGCGTATTCCTCCGCGCGACAGCAGTGTTTATGC
CGCCGCAACCTCTCGTTGCGCTCATGTGACTTAACTGACTTGACTCATGA
AACCTACTGCTGTACACGCCCGTATGTACAACCCTCAGCGCCGCCATTCC
TTGCACCGCTCTCCGTTCCGCCCCCACACATGTTGCTCTTGTTTCCTCGT
CTCCTCGCGCGCATGTGGGGCGCTACTACACTACTGCTGCTGCTGCTGCT
GCTGCTGCTGCTGCTGCTGCTGCGTTCTGATTTGGGGACACTCACACACA
ACACACCCGGTATTCCAACCACCTCCAAACGCCAAACGCATTCGGTGGTG
GTGGGCGCTCGAAACAACATCAGGTATGCGTCCCTGTTTTTCGTAGCGTG
CATAGACCAGGACGACAACGAGCTCATCACCCTGGAGAAGATCCACCTCT
TCGTGGAGGTGCTGGACCGTTACTTCGGGAATGTGTGCGAGCTGGACATC
ATCTTCAACTTCCACAAGGCGTACTACATCTTAGACGAGCTCTTCATCGG
GGGGGAACTGCAGGTCGGCTTGTTGGTTGGTTGGTGTTGTTGAGTCTCTT
TTTTGTTAACAAACAAAAGTTGAAACTTCCTTCCTCGCTCTTTTGCCGTT
CACATGCAGGTCGAAGCATTTTTTCGTTTTTGCGGCGGCGGTCCAATGCA
AGTAGGAAATGAGGCCGCCGTTTCGCGATTCTTGTAGTGTACTGCATGCT
TGTCGCCGAAATACGTATGTGCTAATTTTTGCGTTGTTGTTGCAAGCATT
GTTTCTCCTTGGTCAGCCGCGACCAAGACTACAATAGACTACGCCAACTG
CTGACAATGGTTTTCACCAGCAGCAGTCCCGCGTTCGTGTTGACCCCATA
CACTCACCCGCTTTCCCCACTTTTGGTAGGCCGGACTCTCACGTATACCT
TCAACCAATCAAGCTATATCGTCACCCCCCCCACACACCCTGCCAGAAAA
AGGAACGAGTGGCCATCAGTGATCGGCCCTGTAGGAACAATGCTCCGTCC
TCTCGAGGACGTGTGGTGAGTGGTCTAACCGCTACATCAGGCGTGCAATA
CATGAGCACACACACACACCCTCCCTCCTACCGCCCATTCCTCGGCCCCC
CAGGAAAGTTCGAAGAAGGAGGTGTTGCGAGTATGCTCTCAGATGGACGA
GCTGATGGAGGAGGCCAAGGAGGAAGCGGCGAACGGAAACCAGGGGCCAT
CCCGCCGCCGGTGACCGCGACACACGCCGACATTCCGCTAGCGGTTGGTC
GCGCCCCCGCCGGCCGACTCCTCTCCGCAGGGCTGTTGAATGCTTCATGC
TGCCGTGCCGCCTTTGAATGCTTGCACTTTTTTTGGGGGGGTTCCGTGTG
CAACGTCAACCGAAAGTTGTACAGACAATGTCGCCAACAGATTGGGATTA
CAAAGAGTAAAAAGAAGATTTGGTTTACATGTTTGTTCGGAGTTTGTATC
TTTCTTTGTCGTGTTCATCGTTGCCTATTTAGCTCCTCCCACCCCTTCCT
TTTTGGGCGTTGGCGTCGTAGTTAGGTAATATGGTACGTGTCTTCCTCTG
CGCGCCCGTTCATCTATCAGTTCGTTCGTTCGCGGCTTCTGTTTGTTGCG
CCGACGGGAAGAAAGTCGGTCCTTTTCTGATGCGCAACACCGTGTTCCAG
CGCTTTAGGCCTCAACGACGGGATAACAGCTGGGTAGCGACCGCGCCAAG
AAGAAATATTCTGGTCGTGGCATAGATGC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1685:1878..6406-

>mRNA_E-siliculosus-1a_F_contig1685.3838.1 ID=mRNA_E-siliculosus-1a_F_contig1685.3838.1|Name=mRNA_E-siliculosus-1a_F_contig1685.3838.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=966bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1685:1878..6406- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGATGATTAACTTCTTGCTTCTCATCAGTCGACAAGGCAAGACACGCCT
GACCAAGTGGTATCAGACCTACTCGGCTAAGATTAACTTCTTGCTTCTCA
TCAGTCGACAAGGCAAGACACGCCTGACCAAGTGGTATCAGACCTACTCG
GCTAAGGAGAAAGCGCGCACGGTGCGGGAGATCACGTCGACGGTGCTGGC
GCGCGCCCCCAAGATGTGCAACTTCGTGGAGTGGAGGGATAAGAAGATTG
TCTACAAGAGGAGAAAGCGCGCACGGTGCGGGAGATCACGTCGACGGTGC
TGGCGCGCGCCCCCAAGATGTGCAACTTCGTGGAGTGGAGGGATAAGAAG
ATTGTCTACAAGAGGTATGCGTCCCTGTTTTTCGTAGCGTGCATAGACCA
GGACGACAACGAGCTCATCACCCTGGAGAAGATCCACCTCTTCGTGGAGG
TGCTGGACCGTTACTTCGGGAATGTGTGCGAGCTGGACATCATCTTCAAC
TTCCACAAGGCGTACTACATCTTAGACGAGCTCTTCATCGGGGGGGAACT
GCAGGTATGCGTCCCTGTTTTTCGTAGCGTGCATAGACCAGGACGACAAC
GAGCTCATCACCCTGGAGAAGATCCACCTCTTCGTGGAGGTGCTGGACCG
TTACTTCGGGAATGTGTGCGAGCTGGACATCATCTTCAACTTCCACAAGG
CGTACTACATCTTAGACGAGCTCTTCATCGGGGGGGAACTGCAGGAAAGT
TCGAAGAAGGAGGTGTTGCGAGTATGCTCTCAGATGGACGAGCTGATGGA
GGAGGCCAAGGAGGAAGCGGCGAACGGAAACCAGGGGCCATCCCGCCGCC
GGTGAGAAAGTTCGAAGAAGGAGGTGTTGCGAGTATGCTCTCAGATGGAC
GAGCTGATGGAGGAGGCCAAGGAGGAAGCGGCGAACGGAAACCAGGGGCC
ATCCCGCCGCCGGTGA
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