mRNA_E-siliculosus-1a_F_contig1667.3747.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
|
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1667.3747.1 vs. uniprot
Match: A0A6H5L574_9PHAE (PKD_channel domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L574_9PHAE) HSP 1 Score: 531 bits (1368), Expect = 5.620e-186 Identity = 281/305 (92.13%), Postives = 286/305 (93.77%), Query Frame = 1
Query: 640 MLTFHKRMSIVTDTLSRASTHLDHFLFVFFLVILAFAALTWLLVGSSTKEFSTLEDAWRSVIRISLGESENFYPQILDAQPTVGPVVVVLYQVLGVVLLLNVVIAIFLEAYRGVVSGMRGEDTILQSFIAFVGMSWCSLKTRIRWATACIRWRLGGRRNTSPQDRPRRPSLKMVLQGSTGVCGVDGRPVVMVRRPPESSTVLGRQLSFNCPRYITVTEMQALIEATPVPARVADRLVRKIVHDWVFRSDERITGGVFQSPSSSGEYGNGTGGRNGGVTVPSTRRSSSTDSSRPMLRRWSSSTASR 1554
MLTFHKRMSIVTDTLSRASTHL+HFLFVFFLVILAFAALTWLLVGSSTKEFSTLEDAWRSVIRISLGESENFYPQILDAQPTVGPVVVVLYQVLGVVLLLNVVIAI LEAYRGV SGM GEDTI QSFIAFVGMSWCSL TRIRWATACIRWRLGGRRNTS RPSLK+ LQGSTGVCGVDGRPVVMVRRPPESST+LGRQLSFNCPRYITVTEMQALIEATPVPARVADRLVRKIVHDWVFRSDERITGG FQSPSSSGEYGNGTGG NGGVT + RR+SSTDSSRPM RR SSSTASR
Sbjct: 1 MLTFHKRMSIVTDTLSRASTHLNHFLFVFFLVILAFAALTWLLVGSSTKEFSTLEDAWRSVIRISLGESENFYPQILDAQPTVGPVVVVLYQVLGVVLLLNVVIAILLEAYRGVASGMHGEDTIFQSFIAFVGMSWCSLTTRIRWATACIRWRLGGRRNTS------RPSLKIFLQGSTGVCGVDGRPVVMVRRPPESSTILGRQLSFNCPRYITVTEMQALIEATPVPARVADRLVRKIVHDWVFRSDERITGGSFQSPSSSGEYGNGTGGGNGGVTATNLRRTSSTDSSRPMQRRPSSSTASR 299
BLAST of mRNA_E-siliculosus-1a_F_contig1667.3747.1 vs. uniprot
Match: D7FTQ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTQ4_ECTSI) HSP 1 Score: 363 bits (931), Expect = 1.710e-116 Identity = 180/197 (91.37%), Postives = 188/197 (95.43%), Query Frame = 1
Query: 1 LNFGYCTLLVMEDLGVIPRDEVRSVNVQLVTYNGNQGSAFGSINIGFTFDHGGEVEANELVTAYILTGNAGQGSDRIRWILGLIFVCMTLAMIRHDTRKWYRARRAKARRNKCHCVCGFTFFTLIILNVLMWLGWASLGQVIAFDVVVQNTG-EESSVLDALVGQVLALQEAALFSWALHIIFLLTTLAGLYRWIFQ 588
LNFGYCTLLVMEDL VIPRDEVRSVNVQLVTYNGNQGSAFGSINIGFTFDHGGEVEA+ELVTAYILTGNAGQG+DRIRWILGLIFVCMTLAMIRHDT+KWYRAR AKARRNKCHC CGFTFFTLIILNVLMWLGWASLG+VIAFDVV+Q T EE SV+ AL GQ+LALQEAALFSW+LHIIFLLTTLAGLYRWIFQ
Sbjct: 329 LNFGYCTLLVMEDLDVIPRDEVRSVNVQLVTYNGNQGSAFGSINIGFTFDHGGEVEAHELVTAYILTGNAGQGNDRIRWILGLIFVCMTLAMIRHDTKKWYRARHAKARRNKCHCCCGFTFFTLIILNVLMWLGWASLGKVIAFDVVLQGTSSEEDSVMAALTGQILALQEAALFSWSLHIIFLLTTLAGLYRWIFQ 525
BLAST of mRNA_E-siliculosus-1a_F_contig1667.3747.1 vs. uniprot
Match: A0A6H5JES1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JES1_9PHAE) HSP 1 Score: 282 bits (721), Expect = 2.350e-89 Identity = 159/226 (70.35%), Postives = 171/226 (75.66%), Query Frame = 1
Query: 940 NVVIAIFL-EAYRGVVSGMRGEDTILQSFIAFVGMSW--------------------CSLKTRIRWATACIRWRLGGRRNTSPQDRPRRPSLKMVLQGSTGVCGVDGRPVVMVRRPPESSTVLGRQLSFNCPRYITVTEMQALIEATPVPARVADRLVRKIVHDWVFRSDERITGGVFQSPSSSGEYGNGTGGRNGGVTVPSTRRSSSTDSSRPMLRRWSSSTASR 1554
++ +A+F+ +AYRGVVSGMRGEDTIL SFIAFVGMSW C LKT IRWATA IRWRL GRRNT PQD PRRPSL+M LQGSTGVCGVDGRPVVMVR PESST+LGRQL ALIEA PVPARVA RLVRKIVH+WVFRSDERITGGV QSPSSSGEYG+GTGG NGGVTV STRR+ TDSSRPMLRRWSS + SR
Sbjct: 4 SLALAVFVVKAYRGVVSGMRGEDTILPSFIAFVGMSWWVLHSRQTARQPEQILTSVSCVLKTGIRWATAYIRWRLAGRRNTPPQDGPRRPSLRMFLQGSTGVCGVDGRPVVMVRGLPESSTILGRQLPA------------ALIEAFPVPARVAGRLVRKIVHEWVFRSDERITGGVSQSPSSSGEYGSGTGGGNGGVTVLSTRRTYCTDSSRPMLRRWSSFSPSR 217
BLAST of mRNA_E-siliculosus-1a_F_contig1667.3747.1 vs. uniprot
Match: D7FTQ7_ECTSI (Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTQ7_ECTSI) HSP 1 Score: 245 bits (625), Expect = 4.500e-76 Identity = 130/136 (95.59%), Postives = 131/136 (96.32%), Query Frame = 1
Query: 640 MLTFHKRMSIVTDTLSRASTHLDHFLFVFFLVILAFAALTWLLVGSSTKEFSTLEDAWRSVIRISLGESENFYPQILDAQPTVGPVVVVLYQVLGVVLLLNVVIAIFLEAYRGVVSGMRGEDTILQSFIAFVGMSW 1047
MLTFHKRMSIVTDTLSRASTHLDHFLFVFFLVILAFAALTWLLVGSSTKEFSTL +AW SV RISLGESENFYPQILDAQPTVGPV VVLYQVLGVVLLLNVVIAIFLEAYRGVVSGMRGEDTI QSFIAFVGMSW
Sbjct: 1 MLTFHKRMSIVTDTLSRASTHLDHFLFVFFLVILAFAALTWLLVGSSTKEFSTLVEAWGSVTRISLGESENFYPQILDAQPTVGPVAVVLYQVLGVVLLLNVVIAIFLEAYRGVVSGMRGEDTIFQSFIAFVGMSW 136
BLAST of mRNA_E-siliculosus-1a_F_contig1667.3747.1 vs. uniprot
Match: D7FTQ6_ECTSI (Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTQ6_ECTSI) HSP 1 Score: 214 bits (545), Expect = 7.100e-64 Identity = 130/195 (66.67%), Postives = 134/195 (68.72%), Query Frame = 1
Query: 391 MWLGWASLGQVIAFDVVVQNTG-EESSVLDALVGQVLALQEAALFSWALHIIFLLTTLAGLYRWIFQARDRSKNTTKEKLCSEGMLTFHKRMSIVTDTLSRASTHLDHFLFVFFLVILAFAALTWLLVGSSTKEFSTLEDAWRSVIRISLGESENFYPQILDAQPTVGPVVVVLYQVLGVVLLLNVVIAIFLEAY 972
MWLGWASLG+VIA DVV+Q T EE SVLDA MLTFHKRMSIVTDTLSRASTHLDHFLFVFFLVILAFAALTWLLVGSSTKEFSTLEDAW+SV RISLGESENFYPQILDAQPTVGPVVVVLYQVLGVVLLLNVVIAI LE +
Sbjct: 1 MWLGWASLGKVIANDVVLQGTSSEEDSVLDA-----------------------------------------------------MLTFHKRMSIVTDTLSRASTHLDHFLFVFFLVILAFAALTWLLVGSSTKEFSTLEDAWQSVTRISLGESENFYPQILDAQPTVGPVVVVLYQVLGVVLLLNVVIAILLETF 142
BLAST of mRNA_E-siliculosus-1a_F_contig1667.3747.1 vs. uniprot
Match: A0A6H5JIW8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIW8_9PHAE) HSP 1 Score: 178 bits (452), Expect = 3.810e-50 Identity = 110/177 (62.15%), Postives = 119/177 (67.23%), Query Frame = 1
Query: 427 AFDVVVQNTGEES-SVLDALVGQVLALQEAALFSWALHIIFLLTTLAGLYRWIFQARDRSKNTTKEKLCSEGMLTFHKRMSIVTDTLSRASTHLDHFLFVFFL--------------------------VILAFAALTWLLVGSSTKEFSTLEDAWRSVIRISLGESENFYPQILDA 876
AFDVV+Q+T E+ SVL AL G +LALQEA LFSW+L+IIFLLTTLAGLY WIFQ M TFHKRMSIV DTLSRASTHL FLFVFFL V+LAFAALT+LLVGSSTKE STLEDAWRSVIRIS GES+N YPQILDA
Sbjct: 2 AFDVVLQDTSSEADSVLGALTGPILALQEAELFSWSLYIIFLLTTLAGLYPWIFQ-----------------MFTFHKRMSIVPDTLSRASTHLTQFLFVFFLERLTQLPDKRCLGVLVLVVVLTTPMVVVLAFAALTFLLVGSSTKEISTLEDAWRSVIRISPGESDNLYPQILDA 161
BLAST of mRNA_E-siliculosus-1a_F_contig1667.3747.1 vs. uniprot
Match: A0A6H5JEJ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEJ3_9PHAE) HSP 1 Score: 100 bits (250), Expect = 6.160e-22 Identity = 48/51 (94.12%), Postives = 49/51 (96.08%), Query Frame = 1
Query: 1 LNFGYCTLLVMEDLGVIPRDEVRSVNVQLVTYNGNQGSAFGSINIGFTFDH 153
LNFGYCTLLVMEDL VIPR EVRSVNVQLVTYNGNQGSAFGSIN+GFTFDH
Sbjct: 59 LNFGYCTLLVMEDLDVIPRHEVRSVNVQLVTYNGNQGSAFGSINLGFTFDH 109
BLAST of mRNA_E-siliculosus-1a_F_contig1667.3747.1 vs. uniprot
Match: D7G2W7_ECTSI (Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2W7_ECTSI) HSP 1 Score: 108 bits (270), Expect = 2.010e-21 Identity = 101/356 (28.37%), Postives = 168/356 (47.19%), Query Frame = 1
Query: 1 LNFGYCTLLVMEDLGVIPRDEVRSVNVQLVTYNGNQGSAFGSINIGFTFDHGGEVEANELVTAYILTGNAGQGSDRI-RWILGLIFVCMTLAMIRHDT-RKWYRARRAKARRNKC--HC-VCGFTFFTLIILNVLMW--LGWASLGQVIA-FDVVVQNTGEESSVLDALVGQVLALQEAALFSWALHIIFLLTTLAGLYRWIFQARDRSKNTTKEKLCSEGMLTFHKRMSIVTDTLSRASTHLDHFLFVFFLVILAFAALTWLLVGSSTKEFSTLEDAWRSVIRISLGESENFYPQILDAQPTVGPVVVVLYQVLGVVLLLNVVIAIFLEAYRGVV--SGMRGEDTILQSFIAFVG 1038
LNF C +L + + D VRSV+++ TYNG F ++I F GGEV+ V + + G + R I F M + I D R W R + R + H V T L+ V +W + W ++ A F+++ + +S + LAL AL W + ++ GL R ML FH R+S+VTD L+ ++ HL HF +FF+V+ ++ L W++ G S+ F+T ++ ++ RI+LGE +N YP +++ +++V YQ L +LLLN+VI+I L+A++ V + + DT+ Q+ + +G
Sbjct: 41 LNFNLCGMLAILGGPDVMTDAVRSVSLRFNTYNGQCDGLFSFVDITALFTLGGEVKMVTSVEVFSMPFFFGSSPAIVGRAIAMFAFGLMLVIYIGKDVLRAWREVRDGRHRLSMSLRHVPVTTATALNLVGDCVFLWNLVLWVNVAVTAAKFELIPTLSYNNASEQVRAFSEELAL--VALERWKRDAAAVAGSIFGLTRLFI------------------MLRFHPRLSLVTDVLTASAVHLVHFFIMFFMVVGVYSNLVWVIFGPSSLLFATWTKSFVTMTRIALGEFDNIYPLMVEIDGAAAFMIIVTYQTLQCILLLNIVISILLDAFQMVQKRNSVVAADTLWQTVMTTLG 376
BLAST of mRNA_E-siliculosus-1a_F_contig1667.3747.1 vs. uniprot
Match: A0A8J5X0G5_DIALT (PKD_channel domain-containing protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5X0G5_DIALT) HSP 1 Score: 70.9 bits (172), Expect = 3.510e-9 Identity = 43/123 (34.96%), Postives = 71/123 (57.72%), Query Frame = 1
Query: 643 LTFHKRMSIVTDTLSRASTHLDHFLFVFFLVILAFAALTWLLVGSSTKEFSTLEDAWRSVIRISLGESENFYPQILDAQPTVGPVVVVLYQVLGVVLLLNVVIAIFLEAYRGVVSGMRGEDTI 1011
L FH++ S+VT TL RA L HFL VF +V++ +A + + ++G + ++TL A S+ + + + + I+D P VGPV Y +L ++L+NV++AI L+AY V R + I
Sbjct: 540 LAFHQQFSLVTATLLRAGASLAHFLVVFAIVLVMYAFVGFNMLGHKLERYNTLGKAINSMCSMLVFDDTVSFADIMDVAPLVGPVFYWSYFILSSLMLINVLLAILLDAYASVSRASRTTNFI 662
BLAST of mRNA_E-siliculosus-1a_F_contig1667.3747.1 vs. uniprot
Match: A0A7S1CFF4_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CFF4_9STRA) HSP 1 Score: 57.4 bits (137), Expect = 6.320e-5 Identity = 40/126 (31.75%), Postives = 68/126 (53.97%), Query Frame = 1
Query: 640 MLTFHKRMSIVTDTLSRASTHLDHFLFVFFLVILAFAALTWLLVGSSTKEFSTLEDAWRSVIRISLGESENFYPQILDAQPTVGPVVVVLYQVLGVVLLLNVVIAIFLEAYRGVVSGMRGEDTILQ 1017
+L F R+ +VT T+ RA+ L HFL +F V+ A+A + +L GS+ KEF T+ ++ S + I LGE + +L G + + L +L+NV++AI ++AY V T+++
Sbjct: 721 LLDFQPRLGLVTRTIWRAAMDLAHFLMLFTTVMGAYAVIGNVLFGSNLKEFRTVWHSFVSCLEILLGEVQLNEDLMLLEDQAFGVIYFWSFVGLSFFMLINVLLAIIVDAYVDVKKSAASSATVIE 846 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1667.3747.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1667.3747.1 >prot_E-siliculosus-1a_F_contig1667.3747.1 ID=prot_E-siliculosus-1a_F_contig1667.3747.1|Name=mRNA_E-siliculosus-1a_F_contig1667.3747.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=509bp MEDLGVIPRDEVRSVNVQLVTYNGNQGSAFGSINIGFTFDHGGEVEANELback to top mRNA from alignment at E-siliculosus-1a_F_contig1667:1169..10297+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1667.3747.1 ID=mRNA_E-siliculosus-1a_F_contig1667.3747.1|Name=mRNA_E-siliculosus-1a_F_contig1667.3747.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=9129bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1667:1169..10297+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1667:1169..10297+ >mRNA_E-siliculosus-1a_F_contig1667.3747.1 ID=mRNA_E-siliculosus-1a_F_contig1667.3747.1|Name=mRNA_E-siliculosus-1a_F_contig1667.3747.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=3054bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1667:1169..10297+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |