mRNA_E-siliculosus-1a_F_contig1617.3535.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1617.3535.1
Unique NamemRNA_E-siliculosus-1a_F_contig1617.3535.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1617.3535.1 vs. uniprot
Match: D8LGR0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGR0_ECTSI)

HSP 1 Score: 398 bits (1023), Expect = 1.980e-139
Identity = 196/224 (87.50%), Postives = 207/224 (92.41%), Query Frame = 1 
Query:   22 MEWKKNGRDSHYMEGHHEYGQITTGTGSPFTFDGFRVRHLFKADPKLWKISLSGFRRPFRGVGDQPTHTIRNDPHPQRYMFVDSRPEHNWTMLQKNNDSGGIAGEFFMEHADVDDIHQPEARVSAQRLIAGDFLNGGEMAGGADYFIPVYIICALNGGESYLGLDDHDNVIRTGTPHVWYLRRGRNAISKRSISNAAMRAFDRSVASAAATATGVSAAADHGGS 693
            MEWKK+G DSHYM+GHHEYGQITT TGSPF FDGFRVRHLFKADPKLWKISLSGFRRPFRGVGDQPTHTIRNDP+PQRYMFVDSRPEHNWTMLQKN DSGGIAGEFF+EHADVD+I + EA  SAQRLIA DFLNGG+M G ADY IPVYIICALNGGESYLGLDDHDNVIRT  PHVWYL RGRNAI+KR+IS+AAM+ FDRSVASAAA ATGVSAAADHGGS
Sbjct:    1 MEWKKHGTDSHYMKGHHEYGQITTETGSPFAFDGFRVRHLFKADPKLWKISLSGFRRPFRGVGDQPTHTIRNDPNPQRYMFVDSRPEHNWTMLQKNFDSGGIAGEFFIEHADVDNIRKLEA--SAQRLIAADFLNGGKMEGKADYCIPVYIICALNGGESYLGLDDHDNVIRTDAPHVWYLGRGRNAIAKRNISDAAMKVFDRSVASAAAAATGVSAAADHGGS 222
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BLAST of mRNA_E-siliculosus-1a_F_contig1617.3535.1 vs. uniprot
Match: A0A6H5J7H6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7H6_9PHAE)

HSP 1 Score: 382 bits (982), Expect = 1.290e-133
Identity = 174/187 (93.05%), Postives = 182/187 (97.33%), Query Frame = 1 
Query:    1 MSEPRWFMEWKKNGRDSHYMEGHHEYGQITTGTGSPFTFDGFRVRHLFKADPKLWKISLSGFRRPFRGVGDQPTHTIRNDPHPQRYMFVDSRPEHNWTMLQKNNDSGGIAGEFFMEHADVDDIHQPEARVSAQRLIAGDFLNGGEMAGGADYFIPVYIICALNGGESYLGLDDHDNVIRTGTPHVWY 561
            MSEPRWFMEWKKNGRDSHYMEGHHEYGQITTGTGSPFTFDGFRVRHLFKADPKLWKISLSGFRRPFRGVGDQPTHTIRNDPHPQRYMFVDSRP+HNWTMLQK+ DSGGIAGEFF+EHAD+DDI +PEA VSA+RLIA DFL+GGEM GGADYFIPVYIICALNGGESYLGLD+HDNVIRTGTPHVWY
Sbjct:    1 MSEPRWFMEWKKNGRDSHYMEGHHEYGQITTGTGSPFTFDGFRVRHLFKADPKLWKISLSGFRRPFRGVGDQPTHTIRNDPHPQRYMFVDSRPDHNWTMLQKDFDSGGIAGEFFLEHADLDDIRKPEAGVSAKRLIAADFLDGGEMQGGADYFIPVYIICALNGGESYLGLDNHDNVIRTGTPHVWY 187
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1617.3535.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LGR0_ECTSI1.980e-13987.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J7H6_9PHAE1.290e-13393.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1617contigE-siliculosus-1a_F_contig1617:27292..27987 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size696
Model size696
Exons1
Ec32 orthologEc-07_005370.1
Ec32 ortholog descriptionhypothetical protein
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928132.0681303-CDS-E-siliculosus-1a_F_contig1617:27291..279871622928132.0681303-CDS-E-siliculosus-1a_F_contig1617:27291..27987Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1617 27292..27987 -
1696318816.830664-CDS-E-siliculosus-1a_F_contig1617:27291..279871696318816.830664-CDS-E-siliculosus-1a_F_contig1617:27291..27987Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1617 27292..27987 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1617.3535.1prot_E-siliculosus-1a_F_contig1617.3535.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1617 27292..27987 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1617.3535.1

>prot_E-siliculosus-1a_F_contig1617.3535.1 ID=prot_E-siliculosus-1a_F_contig1617.3535.1|Name=mRNA_E-siliculosus-1a_F_contig1617.3535.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=232bp
MSEPRWFMEWKKNGRDSHYMEGHHEYGQITTGTGSPFTFDGFRVRHLFKA
DPKLWKISLSGFRRPFRGVGDQPTHTIRNDPHPQRYMFVDSRPEHNWTML
QKNNDSGGIAGEFFMEHADVDDIHQPEARVSAQRLIAGDFLNGGEMAGGA
DYFIPVYIICALNGGESYLGLDDHDNVIRTGTPHVWYLRRGRNAISKRSI
SNAAMRAFDRSVASAAATATGVSAAADHGGS*
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mRNA from alignment at E-siliculosus-1a_F_contig1617:27292..27987-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1617.3535.1 ID=mRNA_E-siliculosus-1a_F_contig1617.3535.1|Name=mRNA_E-siliculosus-1a_F_contig1617.3535.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=696bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1617:27292..27987- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTCTGAGCCAAGGTGGTTCATGGAGTGGAAAAAAAATGGAAGGGACTC
GCACTACATGGAAGGACACCACGAGTACGGGCAAATCACGACCGGGACAG
GCAGTCCGTTCACGTTCGACGGCTTCCGCGTCAGGCATTTGTTCAAGGCC
GATCCCAAGCTGTGGAAGATATCCCTTTCGGGTTTCCGTCGACCCTTCCG
CGGCGTCGGTGATCAACCCACCCACACTATTCGCAACGATCCCCACCCTC
AGCGCTACATGTTCGTGGACTCCCGGCCGGAACACAACTGGACCATGTTG
CAGAAGAATAACGATTCCGGCGGCATTGCCGGTGAATTCTTCATGGAGCA
CGCCGACGTGGACGATATTCATCAACCCGAGGCCCGCGTCAGCGCCCAAC
GACTCATTGCCGGAGACTTCCTAAATGGAGGAGAGATGGCAGGGGGGGCA
GACTACTTCATCCCCGTTTACATCATCTGCGCACTCAACGGAGGTGAGTC
CTACCTCGGCCTCGACGATCACGACAATGTCATTCGCACGGGTACCCCCC
ACGTGTGGTACTTGCGCCGCGGCCGGAACGCGATTTCGAAGAGGAGCATT
TCGAACGCCGCCATGAGGGCATTCGATCGCTCGGTGGCCTCGGCTGCGGC
CACCGCGACTGGGGTATCCGCGGCTGCTGACCATGGTGGCAGCTAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1617:27292..27987-

>mRNA_E-siliculosus-1a_F_contig1617.3535.1 ID=mRNA_E-siliculosus-1a_F_contig1617.3535.1|Name=mRNA_E-siliculosus-1a_F_contig1617.3535.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1392bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1617:27292..27987- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTCTGAGCCAAGGTGGTTCATGGAGTGGAAAAAAAATGGAAGGGACTC
GCACTACATGGAAGGACACCACGAGTACGGGCAAATCACGACCGGGACAG
GCAGTCCGTTCACGTTCGACGGCTTCCGCGTCAGGCATTTGTTCAAGGCC
GATCCCAAGCTGTGGAAGATATCCCTTTCGGGTTTCCGTCGACCCTTCCG
CGGCGTCGGTGATCAACCCACCCACACTATTCGCAACGATCCCCACCCTC
AGCGCTACATGTTCGTGGACTCCCGGCCGGAACACAACTGGACCATGTTG
CAGAAGAATAACGATTCCGGCGGCATTGCCGGTGAATTCTTCATGGAGCA
CGCCGACGTGGACGATATTCATCAACCCGAGGCCCGCGTCAGCGCCCAAC
GACTCATTGCCGGAGACTTCCTAAATGGAGGAGAGATGGCAGGGGGGGCA
GACTACTTCATCCCCGTTTACATCATCTGCGCACTCAACGGAGGTGAGTC
CTACCTCGGCCTCGACGATCACGACAATGTCATTCGCACGGGTACCCCCC
ACGTGTGGTACTTGCGCCGCGGCCGGAACGCGATTTCGAAGAGGAGCATT
TCGAACGCCGCCATGAGGGCATTCGATCGCTCGGTGGCCTCGGCTGCGGC
CACCGCGACTGGGGTATCCGCGGCTGCTGACCATGGTGGCAGCTAGATGT
CTGAGCCAAGGTGGTTCATGGAGTGGAAAAAAAATGGAAGGGACTCGCAC
TACATGGAAGGACACCACGAGTACGGGCAAATCACGACCGGGACAGGCAG
TCCGTTCACGTTCGACGGCTTCCGCGTCAGGCATTTGTTCAAGGCCGATC
CCAAGCTGTGGAAGATATCCCTTTCGGGTTTCCGTCGACCCTTCCGCGGC
GTCGGTGATCAACCCACCCACACTATTCGCAACGATCCCCACCCTCAGCG
CTACATGTTCGTGGACTCCCGGCCGGAACACAACTGGACCATGTTGCAGA
AGAATAACGATTCCGGCGGCATTGCCGGTGAATTCTTCATGGAGCACGCC
GACGTGGACGATATTCATCAACCCGAGGCCCGCGTCAGCGCCCAACGACT
CATTGCCGGAGACTTCCTAAATGGAGGAGAGATGGCAGGGGGGGCAGACT
ACTTCATCCCCGTTTACATCATCTGCGCACTCAACGGAGGTGAGTCCTAC
CTCGGCCTCGACGATCACGACAATGTCATTCGCACGGGTACCCCCCACGT
GTGGTACTTGCGCCGCGGCCGGAACGCGATTTCGAAGAGGAGCATTTCGA
ACGCCGCCATGAGGGCATTCGATCGCTCGGTGGCCTCGGCTGCGGCCACC
GCGACTGGGGTATCCGCGGCTGCTGACCATGGTGGCAGCTAG
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