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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig157.3298.1 vs. uniprot
Match: A0A6H5JFG5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG5_9PHAE) HSP 1 Score: 379 bits (972), Expect = 8.820e-118 Identity = 214/265 (80.75%), Postives = 222/265 (83.77%), Query Frame = 2
Query: 2 NRSGFIEKHELRMLFEALSREPARRKARARAKAELAEERARQKELRSAEAHDASERLEKYKKAGVYSVLKRIEVWQTRTGKRLSESFRGSTGDGAGNHGLDVDELAAFMRNLDFELSPAEAMLVLRHLDGGNNGLVEVGEVATAVRDIRRYEMIVKAAREDHILSGPSGGARARRPPLATAGTVSSCDAAFDDAGHDDCGAGGAGVEGGVGY-------LWESPGVYGRE-HFPSSFELMQD-----GPAVFRPPLEIITHGRAS 757
NRSG+IEKHELRMLFEALSREPARRKARARAKAELAEERARQ+ELR+AEAHDA ERLEKYKKAGVYSVLKRIEVWQTRTGKRLSESFRGSTGDGAGNHGLDVDELAAFMRNLDFELSPAEAMLVLRHLDGGNNGLVEVGEVATAVRDIRRYEMIVKAAREDH+LSGPSGG RARRP LATAGTVS+CDAAFDDAGHDD GAGGAG EGGVG LW S GR P + E G + RPP + AS
Sbjct: 579 NRSGYIEKHELRMLFEALSREPARRKARARAKAELAEERARQQELRTAEAHDALERLEKYKKAGVYSVLKRIEVWQTRTGKRLSESFRGSTGDGAGNHGLDVDELAAFMRNLDFELSPAEAMLVLRHLDGGNNGLVEVGEVATAVRDIRRYEMIVKAAREDHVLSGPSGGGRARRPLLATAGTVSTCDAAFDDAGHDDRGAGGAGKEGGVGMDRRYSAPLWTSLPTAGRRLRLPEAEEANAGHSSPAGVRLLRPPTPAVATVAAS 843
BLAST of mRNA_E-siliculosus-1a_F_contig157.3298.1 vs. uniprot
Match: D8LCN4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCN4_ECTSI) HSP 1 Score: 354 bits (908), Expect = 2.060e-110 Identity = 191/217 (88.02%), Postives = 194/217 (89.40%), Query Frame = 2
Query: 41 LFEALSREPARRKARARAKAELAEERARQKELRSAEAHDASERLEKYKKAGVYSVLKRIEVWQTRTGKRLSESFRGSTGDGAGNHGLDVDELAAFMRNLDFELSPAEAMLVLRHLDGGNNGLVEVGEVATAVRDIRRYEMIVKAAREDHILSGPSGGARARRPPLATAGTVSSCDAAFDDAGHDDCGAGGAGVEGGVGYLWESPGVYGREHFPSSFE 691
+F L REPARRKARARAKAELAEER RQKELR+AEAHDASERLE YKKAGVY+VLKRIEVWQTRTGK LSESFRGSTGDG GNHGLDVDELAAFMRNLDFELSPAEAMLVLRHLDGGNNGLVEVGEVATAVRDIRRYEMIVKAAREDHILSGPS G RARRPPLATAGTVSS DAAFDD EGGVGYLWESPGVYGREHFPSSFE
Sbjct: 415 VFFFLDREPARRKARARAKAELAEERIRQKELRTAEAHDASERLEMYKKAGVYAVLKRIEVWQTRTGKHLSESFRGSTGDGTGNHGLDVDELAAFMRNLDFELSPAEAMLVLRHLDGGNNGLVEVGEVATAVRDIRRYEMIVKAAREDHILSGPSSGGRARRPPLATAGTVSSYDAAFDDXXXXXXXXXXXXXEGGVGYLWESPGVYGREHFPSSFE 631
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 1 |
| Cds size | 1461 |
| Model size | 1775 |
| Exons | 5 |
| Hectar predicted targeting category | other localisation |
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig157.3298.1 >prot_E-siliculosus-1a_F_contig157.3298.1 ID=prot_E-siliculosus-1a_F_contig157.3298.1|Name=mRNA_E-siliculosus-1a_F_contig157.3298.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=487bp
MLFEALSREPARRKARARAKAELAEERARQKELRSAEAHDASERLEKYKK
AGVYSVLKRIEVWQTRTGKRLSESFRGSTGDGAGNHGLDVDELAAFMRNL
DFELSPAEAMLVLRHLDGGNNGLVEVGEVATAVRDIRRYEMIVKAAREDH
ILSGPSGGARARRPPLATAGTVSSCDAAFDDAGHDDCGAGGAGVEGGVGY
LWESPGVYGREHFPSSFELMQDGPAVFRPPLEIITHGRASTAPARGRRSQ
RGTLVASRRPTTAATDTGSCDGSGNRPPLARAGGTASRELGAAWAGRLVG
GAGDVASGSGRGVAGGGVARPGSGGSGAHGGSPAADSIHALQQQQQQQRR
RQTRRSPHPVPHRGISSKRFLEDGGDGAVIGRAAGRANKGRNALAVEVVG
KPGAADTDRAAGSATSASSAAAVAAEGVEEPQSPWVLGLRDEWWPTAMSA
VEDGARLNIYTGSVLDGRWLNSLDARLTRTMRATRR* back to topmRNA from alignment at E-siliculosus-1a_F_contig157:45619..49242+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig157.3298.1 ID=mRNA_E-siliculosus-1a_F_contig157.3298.1|Name=mRNA_E-siliculosus-1a_F_contig157.3298.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3624bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig157:45619..49242+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GAACCGGAGCGGGTTTATCGAGAAACACGAACTTCGAATGTTGTTCGAAG
CTCTCTCCAGGGAGCCCGCGCGGCGAAAGGCTCGGGCGAGGGCGAAGGCA
GAGCTCGCCGAAGAAAGGGCCCGGCAAAAGGTTGGGCGCTGCTGGAGTCC
CCGGTTTACTGTGGGGGTGTCGTTCGCGGAGTCGTGGTGCTCCTGAGTTG
TTGGTGTGGTGGTTGTGCGTCGCAATTGAACGACAAGCGGATTTCTGCCC
GAAATCTATCGTATTGACCGGGGTCGACACCAGGCTCTGGGCTCAGCAGA
ACCACGTGCGGGGAGGAAACTCTTTTTTCTACAGACCAGGGGTCGATTGT
GTCAAGAGGACAAAATGCGCTGCATACCACAAGGTGTTCTAATTATTTCC
AATGCAATTTCTGGACACCATCAGTCAAACGGCCGCTGACGGAGGTTGCG
TGATTGCCCTAGGAACGCACAGCAGTGGTTCGCGTGGTAGGGCGAGCGAT
GCGTTCCGAACCGAAAACGGTTTAGCTTCTGCACTCTTTCCTTTCGAATA
TATCCTCCACATGGCAGGAGTTGAGATCGGCCGAAGCACATGACGCGTCG
GAGAGGCTGGAGAAGTACAAGAAGGCGGGGGTGTACTCGGTGCTGAAGCG
GATAGAGGTGTGGCAAACGCGCACCGGCAAGCGCCTCAGCGAAAGCTTTC
GCGGCAGCACGGGTGAGTGGCATGTTGTTTTTGTGGTTGTCCTGCTGCCT
TTCCCCCGAGTCCTACTGTCGTCCTGGAAGAAGTTCTTGGGGTTCTGGTT
TCCCTTCCACACCTCAAAAATATCCCGCGCAGCCCCTCGAATAGGCAGAG
ACCTTCCTGTGGGATACTCAGACCAAAGAGAGCTGCCAAGTATGATCGTT
GGGTGCTATCTTGCCCTTCTAATCTTGTCGTCGGTCAAGTGATACGTCAG
AACGCTGAACCTGGTGGCAGGCGCTATTTAAGGCAATGTGGTTTCGATTG
CGCTCAAGAGGTGACCTGATATAATGATATGTGTAGAACGAACAGAATGT
CGACGCGACCGTCGATGCCTGCAACTGGTGTAAACCTTAGCTGATCACAG
AGATGGAAGACAAACAAATACCACACGGTAGCGGTATATGGATGGATTGG
CACATTGGGGATGGGCCTCTGGAACGTGGGGTTGTCTCTTTCTTGGCCCC
GACGCGATTGGCAGCAGGCGTAATTCCCGGTGGTGAAAAGCGTACACAAG
GGTTGGATTGGACCACAGCCACCAGGCGCCGATCGATGCTATGCGGAGCA
CGAAAATAGCCGTCGACTGACATGGCCTGTCCCGAACCTCCCCCGCAGGT
GATGGTGCCGGCAATCACGGCTTGGATGTCGACGAACTGGCGGCGTTCAT
GCGCAACCTCGACTTCGAGCTCAGCCCGGCGGAGGCCATGTTGGTGAGAC
TTGGCAAAGACGGTACGGCGGTCCAGCCATCAGAGCTTTCAAGCTCGTAC
GTTTCTTGTTTTGTCGGGTTTCTGACTACAGCATTCGGATCCCGTCGACA
AGCCTGTCGCAGCAAAGGCCGAGAACCAACACACAGAACATCCCCTGGCC
ATCTAGATTGAGCCCCGCTCTCCGCCCCGCACCTAACGAACCAACCAAGG
TCCTACGGCACCTTGACGGAGGAAACAACGGGCTCGTGGAGGTTGGCGAG
GTGGCCACCGCCGTCCGGGACATTCGGAGGTACGAGATGATCGTCAAGGC
AGCGCGAGAAGACCACATTCTCAGTGGTCCCAGTGGTGGCGCTCGTGCCC
GGAGGCCGCCGCTGGCCACCGCCGGCACTGTCAGCAGCTGCGATGCTGCT
TTCGACGACGCTGGGCATGACGACTGTGGTGCGGGAGGCGCGGGCGTCGA
GGGCGGGGTCGGGTACCTTTGGGAGAGTCCGGGAGTGTACGGGCGAGAAC
ACTTTCCTTCGTCTTTCGAGGTGGGGGGTAGAGAAAAGTGTGAAGCAAAA
ACATCTCTTGGATTGCACTCGGTACACATGTCGCTTGCGCCCTAGAACGC
TGGTTGTCGCTTCCGTTGGCCGCTTCATCATTACCGTATACGATGCAAGA
TAACACACCCCCTGGATCGATTTTCAAAATTCGACTTCTCAACAATAGAA
AGCGTCCCAGCGTCGAAAACGGCGGCGTTGAAGCCGTCTCGTCGCGTCGC
GAGCTTCCAATGTATCGTTTCGTTTTTGCACCCTCTTCGTCGTGGCGTAA
TCTAATCGAGCTTTGAAAATCGGTCCAGGGGGAGATTTATCTTGTGTCTT
ATTCGGTAGGTTCAGTCCATGTCATTTCTGTGTCCATGTCAATTCACGGT
CTGTGTCAAATCACCTTAGCGCAGCATCTGATAGTATCCCCTGTCGTGCT
CTTCCCCGGGCCCTGACCCGTCAGCCAGCCCCTTCCAATCTATCTCCCGC
CTCCCTCTCCTGGCCAGCCCGGTGGCTCTCACGTACCACATCCTACAACC
TCCTGCCGCGCCACGCGCGTCTGCTTGTTTTCACCCGAAGTTGATGCAGG
ATGGACCGGCGGTATTCCGCCCCCCTTTGGAAATCATCACCCACGGCAGG
GCGTCGACTGCGCCCGCCAGAGGCAGAAGAAGCCAACGCGGGACACTCGT
CGCCAGCAGGCGTCCGACCACTGCGGCCACCGACACCGGCAGTTGCGACG
GTAGCGGCAACCGGCCGCCTTTGGCGCGGGCAGGCGGCACGGCCAGCCGC
GAGCTAGGTGCCGCCTGGGCCGGGCGCTTGGTCGGCGGCGCTGGGGATGT
CGCCAGCGGTAGTGGTCGTGGTGTTGCTGGTGGGGGGGTTGCTCGCCCTG
GTAGCGGGGGTAGCGGCGCTCATGGTGGCAGCCCGGCAGCAGATTCGATC
CATGCGTTGCAGCAGCAGCAGCAGCAGCAGAGGCGCAGACAAACGCGGCG
GTCGCCACACCCAGTCCCCCACCGCGGGATCAGCAGCAAACGGTTCTTGG
AGGACGGTGGCGACGGGGCTGTCATCGGCCGTGCCGCTGGGAGAGCCAAC
AAGGGTAGGAACGCTTTGGCTGTAGAGGTGGTTGGGAAACCTGGTGCTGC
TGACACGGATCGCGCTGCTGGTTCCGCTACAAGTGCTTCCAGTGCTGCTG
CTGTTGCTGCTGAAGGAGTGGAAGAGCCGCAATCACCGTGGGTGTTGGGC
CTCAGGGATGAGTGGTGGCCGACGGCGATGAGCGCCGTGGAGGACGGGGC
GCGGCTGAACATTTACACCGGGAGCGTGCTGGATGGACGTTGGCTCAACT
CGCTCGATGCGCGTCTTACCAGGACGATGCGGGCAACGAGAAGATGATGA
CGGTGTTTGTTCTTGTAGTCTACCGTTGCAATTTCTGCTGTGGTGGTGGC
GATACGACTCGTGCCGGCTTCGACGGGTTGCGTCGACAGCCTCGTGCTCG
TTAGGCGGTCGTTGTTGCTGATGTTGAGTTCCCGACCCCTGTGTGCTCGC
GGTAGTTTTTCGGTAAATTATCCTGTACGAATAGGCTTCAGTTGTCCTGC
AAGGGTCGTAAACTAAATGAACACTATACAGTACTGTAGCTCTGGCAGAC
GACCAGCGCGATGTCACAAGTTGC back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig157:45619..49242+ >mRNA_E-siliculosus-1a_F_contig157.3298.1 ID=mRNA_E-siliculosus-1a_F_contig157.3298.1|Name=mRNA_E-siliculosus-1a_F_contig157.3298.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2922bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig157:45619..49242+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTTGTTCGAAGCTCTCTCCAGGGAGCCCGCGCGGCGAAAGGCTCGGGC
GAGGGCGAAGGCAGAGCTCGCCGAAGAAAGGGCCCGGCAAAAGATGTTGT
TCGAAGCTCTCTCCAGGGAGCCCGCGCGGCGAAAGGCTCGGGCGAGGGCG
AAGGCAGAGCTCGCCGAAGAAAGGGCCCGGCAAAAGGAGTTGAGATCGGC
CGAAGCACATGACGCGTCGGAGAGGCTGGAGAAGTACAAGAAGGCGGGGG
TGTACTCGGTGCTGAAGCGGATAGAGGTGTGGCAAACGCGCACCGGCAAG
CGCCTCAGCGAAAGCTTTCGCGGCAGCACGGGAGTTGAGATCGGCCGAAG
CACATGACGCGTCGGAGAGGCTGGAGAAGTACAAGAAGGCGGGGGTGTAC
TCGGTGCTGAAGCGGATAGAGGTGTGGCAAACGCGCACCGGCAAGCGCCT
CAGCGAAAGCTTTCGCGGCAGCACGGGTGATGGTGCCGGCAATCACGGCT
TGGATGTCGACGAACTGGCGGCGTTCATGCGCAACCTCGACTTCGAGCTC
AGCCCGGCGGAGGCCATGTTGGTGATGGTGCCGGCAATCACGGCTTGGAT
GTCGACGAACTGGCGGCGTTCATGCGCAACCTCGACTTCGAGCTCAGCCC
GGCGGAGGCCATGTTGGTCCTACGGCACCTTGACGGAGGAAACAACGGGC
TCGTGGAGGTTGGCGAGGTGGCCACCGCCGTCCGGGACATTCGGAGGTAC
GAGATGATCGTCAAGGCAGCGCGAGAAGACCACATTCTCAGTGGTCCCAG
TGGTGGCGCTCGTGCCCGGAGGCCGCCGCTGGCCACCGCCGGCACTGTCA
GCAGCTGCGATGCTGCTTTCGACGACGCTGGGCATGACGACTGTGGTGCG
GGAGGCGCGGGCGTCGAGGGCGGGGTCGGGTACCTTTGGGAGAGTCCGGG
AGTGTACGGGCGAGAACACTTTCCTTCGTCTTTCGAGGTCCTACGGCACC
TTGACGGAGGAAACAACGGGCTCGTGGAGGTTGGCGAGGTGGCCACCGCC
GTCCGGGACATTCGGAGGTACGAGATGATCGTCAAGGCAGCGCGAGAAGA
CCACATTCTCAGTGGTCCCAGTGGTGGCGCTCGTGCCCGGAGGCCGCCGC
TGGCCACCGCCGGCACTGTCAGCAGCTGCGATGCTGCTTTCGACGACGCT
GGGCATGACGACTGTGGTGCGGGAGGCGCGGGCGTCGAGGGCGGGGTCGG
GTACCTTTGGGAGAGTCCGGGAGTGTACGGGCGAGAACACTTTCCTTCGT
CTTTCGAGTTGATGCAGGATGGACCGGCGGTATTCCGCCCCCCTTTGGAA
ATCATCACCCACGGCAGGGCGTCGACTGCGCCCGCCAGAGGCAGAAGAAG
CCAACGCGGGACACTCGTCGCCAGCAGGCGTCCGACCACTGCGGCCACCG
ACACCGGCAGTTGCGACGGTAGCGGCAACCGGCCGCCTTTGGCGCGGGCA
GGCGGCACGGCCAGCCGCGAGCTAGGTGCCGCCTGGGCCGGGCGCTTGGT
CGGCGGCGCTGGGGATGTCGCCAGCGGTAGTGGTCGTGGTGTTGCTGGTG
GGGGGGTTGCTCGCCCTGGTAGCGGGGGTAGCGGCGCTCATGGTGGCAGC
CCGGCAGCAGATTCGATCCATGCGTTGCAGCAGCAGCAGCAGCAGCAGAG
GCGCAGACAAACGCGGCGGTCGCCACACCCAGTCCCCCACCGCGGGATCA
GCAGCAAACGGTTCTTGGAGGACGGTGGCGACGGGGCTGTCATCGGCCGT
GCCGCTGGGAGAGCCAACAAGGGTAGGAACGCTTTGGCTGTAGAGGTGGT
TGGGAAACCTGGTGCTGCTGACACGGATCGCGCTGCTGGTTCCGCTACAA
GTGCTTCCAGTGCTGCTGCTGTTGCTGCTGAAGGAGTGGAAGAGCCGCAA
TCACCGTGGGTGTTGGGCCTCAGGGATGAGTGGTGGCCGACGGCGATGAG
CGCCGTGGAGGACGGGGCGCGGCTGAACATTTACACCGGGAGCGTGCTGG
ATGGACGTTGGCTCAACTCGCTCGATGCGCGTCTTACCAGGACGATGCGG
GCAACGAGAAGATGATTGATGCAGGATGGACCGGCGGTATTCCGCCCCCC
TTTGGAAATCATCACCCACGGCAGGGCGTCGACTGCGCCCGCCAGAGGCA
GAAGAAGCCAACGCGGGACACTCGTCGCCAGCAGGCGTCCGACCACTGCG
GCCACCGACACCGGCAGTTGCGACGGTAGCGGCAACCGGCCGCCTTTGGC
GCGGGCAGGCGGCACGGCCAGCCGCGAGCTAGGTGCCGCCTGGGCCGGGC
GCTTGGTCGGCGGCGCTGGGGATGTCGCCAGCGGTAGTGGTCGTGGTGTT
GCTGGTGGGGGGGTTGCTCGCCCTGGTAGCGGGGGTAGCGGCGCTCATGG
TGGCAGCCCGGCAGCAGATTCGATCCATGCGTTGCAGCAGCAGCAGCAGC
AGCAGAGGCGCAGACAAACGCGGCGGTCGCCACACCCAGTCCCCCACCGC
GGGATCAGCAGCAAACGGTTCTTGGAGGACGGTGGCGACGGGGCTGTCAT
CGGCCGTGCCGCTGGGAGAGCCAACAAGGGTAGGAACGCTTTGGCTGTAG
AGGTGGTTGGGAAACCTGGTGCTGCTGACACGGATCGCGCTGCTGGTTCC
GCTACAAGTGCTTCCAGTGCTGCTGCTGTTGCTGCTGAAGGAGTGGAAGA
GCCGCAATCACCGTGGGTGTTGGGCCTCAGGGATGAGTGGTGGCCGACGG
CGATGAGCGCCGTGGAGGACGGGGCGCGGCTGAACATTTACACCGGGAGC
GTGCTGGATGGACGTTGGCTCAACTCGCTCGATGCGCGTCTTACCAGGAC
GATGCGGGCAACGAGAAGATGA back to top
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