mRNA_E-siliculosus-1a_F_contig157.3297.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig157.3297.1
Unique NamemRNA_E-siliculosus-1a_F_contig157.3297.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig157.3297.1 vs. uniprot
Match: A0A6H5JFG5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG5_9PHAE)

HSP 1 Score: 894 bits (2309), Expect = 3.960e-314
Identity = 496/577 (85.96%), Postives = 523/577 (90.64%), Query Frame = 1 
Query:  952 MPTVDQYIFEDSITYGAITKRGQSKALPLNVASGGALGLGQPGGDSSKGVAFVGAGGDDTESYVDPSALLFADEDIDKLLKFFDKAGRGEDKVTLEEMISGFRRIRRKWATVKAERAGRVVLAKVVRLMRRAGMSLEEWFKFMDISQNGHGDGKLTALELRVGFERLATHIARRECCCRAFKCNRIPNYGLPPLTGPQTDTAGGGLETTNGPSIDHRSSSIGVAKDVSIVERAEKQGNGSSHAQDHGHQAPADHGRHRNHEGVEETDPTQHNHSSGHNQGCTTINGDTNSSITPGGNPDPIQEPDPRRAGRGGERGQQGESEPLGGSAQGDASGSSLGSAVAMGHRQPEGTHGASLYGDSGSVDARRLSRGMNVLSGSPCGGGIDGXXXXXXXXXXXXXXXXXXT--RSEEEPGYEIDRCESDLVPTRAKERPSAGQEQRCGADNQAGQIENNKEEGAESRTRTSSIDVLNAGRAIACREHALDGMVYLGQRAYFLGLESETFTSKDVSDLIRFIDTDVDFSLDIREMRLAISRLHADEDEDDARTSEAGNLLQVLESYMHRTGARFTDVFFFLDRR 2676
            MPTVDQYIFE+SITYGAI KRGQSKALPL VAS GALG+GQPGGDSSKGVAFVGAGG+ TESYVDPSALLFADEDIDKLLKFFD AGRG+DKVTLEEMISGFR+IRRKWATVKAERAGRVVLAKVVRLMRRAGMSLEEWFKFMDISQNGHGDGKLTALELRVGFERLATHIARRECCCRAFKCNRIPNYGLPPLTGPQ D AG G ET NG SI+ RSSS GVAKD+SIVER  KQ N SSHAQDHGHQAP+D G+H +HEG EETDPTQHNHSS H+QGCTTIN DT+SSITP G PDP +EP+P+RAG  GERGQQ ES+PLGGSAQG ASG SLGSA  MGH + +G  GASLYGDSGSVDARRLS+GMNVL G+ CGGG+  XXXXXXXXXXXXXXXXX    RSEEEPG+EID CESDLVP  AKE PSAGQEQ CGA NQAG IEN KEEG +SRTRTSSID+LNAGRA+ACREHALDGMVYLGQRAYFLGLE+ETFTSKDVSDL+RFIDTDVDFSLDIREMRLAISRLHADEDEDDARTSEAGNLLQVLESYMHRTGARFTDVFF LDRR
Sbjct:    1 MPTVDQYIFEESITYGAIRKRGQSKALPLKVASRGALGIGQPGGDSSKGVAFVGAGGNYTESYVDPSALLFADEDIDKLLKFFDNAGRGDDKVTLEEMISGFRKIRRKWATVKAERAGRVVLAKVVRLMRRAGMSLEEWFKFMDISQNGHGDGKLTALELRVGFERLATHIARRECCCRAFKCNRIPNYGLPPLTGPQIDPAGDGFETANGTSINCRSSSSGVAKDLSIVERTGKQENSSSHAQDHGHQAPSDRGKHHHHEGFEETDPTQHNHSSSHHQGCTTINRDTSSSITPDGIPDPTEEPEPKRAGGEGERGQQEESKPLGGSAQGAASGGSLGSAFPMGHHRSQGARGASLYGDSGSVDARRLSQGMNVLPGNRCGGGVXXXXXXXXXXXXXXXXXXXTIARRSEEEPGHEIDHCESDLVPMGAKEGPSAGQEQWCGAGNQAGPIENYKEEGVKSRTRTSSIDMLNAGRAVACREHALDGMVYLGQRAYFLGLENETFTSKDVSDLMRFIDTDVDFSLDIREMRLAISRLHADEDEDDARTSEAGNLLQVLESYMHRTGARFTDVFFCLDRR 577
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig157.3297.1 vs. uniprot
Match: D8LCN4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCN4_ECTSI)

HSP 1 Score: 642 bits (1655), Expect = 3.300e-218
Identity = 392/576 (68.06%), Postives = 401/576 (69.62%), Query Frame = 1 
Query:  952 MPTVDQYIFEDSITYGAITKRGQSKALPLNVASGGALGLGQPGGDSSKGVAFVGAGGDDTESYVDPSALLFADEDIDKLLKFFDKAGRGEDKVTLEEMISGFRRIRRKWATVKAERAGRVVLAKVVRLMRRAGMSLEEWFKFMDISQNGHGDGKLTALELRVGFERLATHIARRECCCRAFKCNRIPNYGLPPLTGPQTDTAGGGLETTNGPSIDHRSSSIGVAKDVSIVERAEKQGNGSSHAQDHGHQAPADHGRHRNHEGVEETDPTQHNHSSGHNQGCTTINGDTNSSITPGGNPDPIQEPDPRRAGRGGERGQQGESEPLGGSAQGDASGSSLGSAVAMGHRQPEGTHGASLYGDSGSVDARRLSRGMNVLSGSPCGGGIDGXXXXXXXXXXXXXXXXXX--TRSEEEPGYEIDRCESDLVPTRAKERPSAGQEQRCGADNQAGQIENNKEEGAESRTRTSSIDVLNAGRAIACREHALDGMVYLGQRAYFLGLESETFTSKDVSDLIRFIDTDVDFSLDIREMRLAISRLHADEDEDDARTSEAGNLLQVLESYMHRTGARFTDVFFFLDR 2673
            MPTVDQYIFED ITYGAITKRG SKALPLN+ASGGALG+GQPGGDSSKG+AFVGAGGDDTESYVDPSALLFADEDIDKLLKFFDKAGRG+DKVTLEEMISGFR+IRRKWATVKAERAGRVVLAKVVRLMRRAGMSLEEWFKFMD SQ                                                                                                                                                           EPDPR AG GGERGQQGES+PLGGSAQGD SG SLGSAV MGH QPEGTHGASLYGD+GSVDARRLSR MNVLSGSPCGGGIDGXXXXXXXXXXXXXXX     TRS+EEPGYEIDRCESDLVPT AKERPSAGQEQ CG DNQAG IENNKEEGAESRTR SSIDVLNAGRAIACREHALDGMVYLGQRAYFLGLESETFTSKDVSDL+RFIDTDVDFSLDIREMRLAISRLHADEDEDDARTSEAGNLLQVLESYMHRTGARFTDVFFFLDR
Sbjct:    1 MPTVDQYIFEDGITYGAITKRGHSKALPLNIASGGALGIGQPGGDSSKGIAFVGAGGDDTESYVDPSALLFADEDIDKLLKFFDKAGRGDDKVTLEEMISGFRKIRRKWATVKAERAGRVVLAKVVRLMRRAGMSLEEWFKFMDTSQ-----------------------------------------------------------------------------------------------------------------------------------------------------------EPDPRHAGGGGERGQQGESKPLGGSAQGDVSGGSLGSAVPMGHHQPEGTHGASLYGDNGSVDARRLSRVMNVLSGSPCGGGIDGXXXXXXXXXXXXXXXSNTIVTRSDEEPGYEIDRCESDLVPTGAKERPSAGQEQWCGTDNQAGHIENNKEEGAESRTRASSIDVLNAGRAIACREHALDGMVYLGQRAYFLGLESETFTSKDVSDLMRFIDTDVDFSLDIREMRLAISRLHADEDEDDARTSEAGNLLQVLESYMHRTGARFTDVFFFLDR 421
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig157.3297.1 vs. uniprot
Match: A0A7S2B085_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B085_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 5.210e-8
Identity = 40/103 (38.83%), Postives = 60/103 (58.25%), Query Frame = 1 
Query: 1150 SALLFADEDIDKLLKFFDKAGRGED-----KVTLEEMISGFRRIRRKWATVKAERAGRVVLAKVVRLMRRAGMSLEEWFKFMDISQNGHGDGKLTALELRVGF 1443
            +A  F+ ++I K+L + D  G  +D     K++L E+   FRR +R  A  + E  GR  + K+  LM +  +++EEWFK MD SQ G GDG ++ LELR G 
Sbjct:   30 AAAGFSMKEIRKVLNYIDSMGEPDDGPSDGKISLRELDQAFRRAKRARAGKEYEVLGRECVYKLEALMEQCDVTVEEWFKEMDNSQGGKGDGTVSTLELRRGL 132
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig157.3297.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JFG5_9PHAE3.960e-31485.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCN4_ECTSI3.300e-21868.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2B085_9STRA5.210e-838.83Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig157contigE-siliculosus-1a_F_contig157:39792..45106 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size2676
Model size2676
Exons5
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig157.3297.1prot_E-siliculosus-1a_F_contig157.3297.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig157 39792..45106 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928081.8653262-CDS-E-siliculosus-1a_F_contig157:39791..409761622928081.8653262-CDS-E-siliculosus-1a_F_contig157:39791..40976Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig157 39792..40976 +
1696318799.214898-CDS-E-siliculosus-1a_F_contig157:39791..409761696318799.214898-CDS-E-siliculosus-1a_F_contig157:39791..40976Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig157 39792..40976 +
1622928081.8806255-CDS-E-siliculosus-1a_F_contig157:41875..420821622928081.8806255-CDS-E-siliculosus-1a_F_contig157:41875..42082Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig157 41876..42082 +
1696318799.226768-CDS-E-siliculosus-1a_F_contig157:41875..420821696318799.226768-CDS-E-siliculosus-1a_F_contig157:41875..42082Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig157 41876..42082 +
1622928081.9019694-CDS-E-siliculosus-1a_F_contig157:42464..434921622928081.9019694-CDS-E-siliculosus-1a_F_contig157:42464..43492Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig157 42465..43492 +
1696318799.2355864-CDS-E-siliculosus-1a_F_contig157:42464..434921696318799.2355864-CDS-E-siliculosus-1a_F_contig157:42464..43492Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig157 42465..43492 +
1622928081.9205828-CDS-E-siliculosus-1a_F_contig157:44399..445101622928081.9205828-CDS-E-siliculosus-1a_F_contig157:44399..44510Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig157 44400..44510 +
1696318799.2447941-CDS-E-siliculosus-1a_F_contig157:44399..445101696318799.2447941-CDS-E-siliculosus-1a_F_contig157:44399..44510Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig157 44400..44510 +
1622928081.9386837-CDS-E-siliculosus-1a_F_contig157:44961..451061622928081.9386837-CDS-E-siliculosus-1a_F_contig157:44961..45106Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig157 44962..45106 +
1696318799.2537923-CDS-E-siliculosus-1a_F_contig157:44961..451061696318799.2537923-CDS-E-siliculosus-1a_F_contig157:44961..45106Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig157 44962..45106 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig157.3297.1

>prot_E-siliculosus-1a_F_contig157.3297.1 ID=prot_E-siliculosus-1a_F_contig157.3297.1|Name=mRNA_E-siliculosus-1a_F_contig157.3297.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=892bp
MDAGRPEHYSSYPPTTPGMVAEEQEGLVSSTSRPASYGGQPASGGAAASG
SRAATTGSSPRLERNSSNDVNRTRDGLVNLAPSLGRYGSRGHSSLAVPVA
GGHDRSDGGNGKSRTVPSSEQHGGGQDGGRVRSKHQVSLRPISRTQPGYV
YSKKMTLGCTPSPASKKALARKRRTPAATGAGGGVPAVRSMLPWWQNIYT
LVRQANVNAPGQATGLESQDSNVFLRGTPTGGAVGGERTSPHQQRVSPTP
PESKHIFDEGGGDANEQQQSNSDKIERSPLSPNGVDAIPSSQRNDGGQHV
EKAYAHYSNLFENPPPTMPTVDQYIFEDSITYGAITKRGQSKALPLNVAS
GGALGLGQPGGDSSKGVAFVGAGGDDTESYVDPSALLFADEDIDKLLKFF
DKAGRGEDKVTLEEMISGFRRIRRKWATVKAERAGRVVLAKVVRLMRRAG
MSLEEWFKFMDISQNGHGDGKLTALELRVGFERLATHIARRECCCRAFKC
NRIPNYGLPPLTGPQTDTAGGGLETTNGPSIDHRSSSIGVAKDVSIVERA
EKQGNGSSHAQDHGHQAPADHGRHRNHEGVEETDPTQHNHSSGHNQGCTT
INGDTNSSITPGGNPDPIQEPDPRRAGRGGERGQQGESEPLGGSAQGDAS
GSSLGSAVAMGHRQPEGTHGASLYGDSGSVDARRLSRGMNVLSGSPCGGG
IDGGGGGGGGGGGGGRSNTVVTRSEEEPGYEIDRCESDLVPTRAKERPSA
GQEQRCGADNQAGQIENNKEEGAESRTRTSSIDVLNAGRAIACREHALDG
MVYLGQRAYFLGLESETFTSKDVSDLIRFIDTDVDFSLDIREMRLAISRL
HADEDEDDARTSEAGNLLQVLESYMHRTGARFTDVFFFLDRR
back to top

mRNA from alignment at E-siliculosus-1a_F_contig157:39792..45106+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig157.3297.1 ID=mRNA_E-siliculosus-1a_F_contig157.3297.1|Name=mRNA_E-siliculosus-1a_F_contig157.3297.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=5315bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig157:39792..45106+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGACGCAGGACGTCCAGAGCACTACAGCAGCTACCCACCAACAACGCC
AGGGATGGTGGCCGAGGAGCAAGAGGGACTCGTCTCTAGCACGTCTCGGC
CTGCGAGTTACGGAGGCCAGCCAGCCTCCGGAGGGGCTGCGGCGAGCGGC
TCTCGGGCAGCGACAACTGGTTCTTCTCCAAGGCTGGAGCGCAACAGCAG
CAACGACGTCAACCGTACAAGAGATGGCCTCGTCAACCTTGCACCGTCAC
TAGGGCGCTACGGCAGTCGCGGACACAGCAGTTTGGCCGTGCCAGTAGCA
GGTGGACACGACCGAAGCGACGGCGGCAATGGGAAATCACGAACCGTTCC
GTCCTCGGAGCAGCACGGAGGCGGACAAGACGGTGGAAGGGTGCGGTCCA
AACACCAGGTCTCGCTGCGACCCATATCGCGAACGCAGCCTGGGTACGTC
TACAGCAAGAAGATGACTTTGGGTTGTACGCCGTCTCCGGCAAGCAAGAA
AGCACTTGCCAGGAAGAGGAGAACGCCTGCGGCAACTGGTGCCGGCGGGG
GCGTACCGGCGGTGAGGTCGATGCTCCCCTGGTGGCAAAACATTTACACT
CTGGTTCGCCAGGCGAACGTGAACGCACCCGGACAAGCCACAGGCTTGGA
AAGTCAAGATTCCAATGTGTTTCTACGCGGCACCCCAACAGGCGGTGCTG
TTGGAGGAGAACGGACGTCTCCGCACCAGCAACGAGTCTCGCCGACACCG
CCAGAAAGTAAACATATATTCGACGAGGGCGGTGGAGATGCCAACGAACA
ACAGCAATCGAACTCCGACAAGATTGAAAGGAGCCCCCTCAGCCCCAATG
GAGTGGATGCAATCCCCTCTTCCCAAAGAAACGATGGCGGGCAACACGTG
GAGAAAGCGTATGCTCACTACTCGAATCTCTTCGAGAACCCTCCACCAAC
CATGCCAACCGTAGACCAGTACATATTCGAGGATAGCATCACGTACGGGG
CAATCACGAAACGAGGGCAAAGCAAGGCCCTCCCGCTGAACGTAGCCAGC
GGGGGTGCTCTCGGGTTAGGACAGCCTGGCGGAGATTCTTCGAAGGGCGT
CGCGTTCGTTGGCGCCGGTGGAGACGACACTGAGTCGTACGTGGACCCAT
CAGCGTTGCTCTTTGCCGACGAAGACATCGACAAGGTAGACAGTGTTTCT
TCTCGTTTTCCCGAAGGCATAGCTGATGATGATCAATAGCCTCCACAACT
TGTCCCTACTGTAGCTTCGCTGCTGTGAACATGTTTGGAGTTGTAGCAAG
GGAAGTCAGCCCCCCCATTTTCCCCTGTTCCACATCACGAGCGTTTCAAT
TTACTTGCCATGTTTCCAAGCCGGGCTCACCAATGTGAAGGAACTCGCAC
TACACAACCTTTGATTTGACTGGCTCAGAAAATACTGTATCCAAGAGATG
TCGCCGCCGTATGAAGTCGGGTCCTCACCTCTTCCTTAGTGGCAACAACA
ACTATCACGGTTCGGCGTTTTGTGGACACGCGAATCCATCGTCCCCTTTT
GCAAGTTTTTGTGTCACGTCGCCACGTACGCGGTGAAACGACTCACGCTG
GAATTACTATGTCTACTGCCCAGACGAAGATGGGCAGACTTTTCGCATTG
GGCCTTCTAGTGTGTACTTCAAATCATCAACCATTCTTTTAGCCCGATCT
TGATTGAACCCCCTCGTCCTGATGTTGCGTGTTGAGGGAGGGCCGTCCCC
TCCACTACCTGTCTAGTGAAGCAACGTAGGTGCAGTCTTTTCTCGCCGAA
TGTTCGCCATACGTCTCTGCACGACTTTCGCTTGGCGTTCTGATTTCGGA
AAAACATTGACTTCAGCTTTGCATTAAAGCTGTATTCCAAAGGGAACCTT
CAGGCTTCCGGACGAAAGCCTGCCAGAATTTGTTTTTGGGTAGACCAAGG
CATCCTGACGTTTTATGCTTATCCTTACCGAAAAATATTCAGCGTGCCGT
TCGCAACTCTCCATGTGAGTTTAGCGACCCAATATTGCCGTTGACGTCGG
GTCTCTCTCAAACACCTGTTCATTGTTGTGGCAGTTACTCAAGTTTTTCG
ACAAAGCTGGGCGCGGGGAAGACAAGGTCACGCTTGAGGAGATGATTTCG
GGCTTTCGCAGGATACGGAGGAAGTGGGCCACCGTTAAGGCCGAAAGAGC
TGGTCGAGTCGTTCTGGCCAAGGTCGTGCGGTTGATGAGACGGGCGGGGA
TGTCTCTCGAAGAGTGGTTCAAGTTCATGGATATATCTCAGGTGATGGTT
TGGTTTTCTTTTGAAGTCGTTGACTGGACAAGTCTTAGTGTTTCGACCTG
TGTTGGGGGTAGAAGGAATATTTCTCTATCTACGGCCCTCGTGGTCGTTG
ATGAGGCGATGGCTGTGAGAGGAACTGCACAGGTCACGTCGGCCGCTCGC
GTATTGATGCGGTGCTCGATGTGTGTGTCCGGCATGTTCTGCTATTTATT
CGAGCATGAACAAGGATGTTCAGACTACAGCTTCATGTAAGTAGTTACCT
TGCTTTTGTTTGTGTGGGGCTGGCGTGTTTGTTGAGCTCGCGTGGGTACG
TACGCCGCACACACTTGCCGGATGCAATTCAGAAAGATCATACACACCGT
AACCCCACACGTTCCCCTCTCAGAATGGACACGGTGACGGAAAGCTGACC
GCTTTGGAGCTCCGAGTGGGCTTTGAGCGTCTGGCCACCCACATCGCTCG
ACGCGAGTGTTGCTGCCGTGCTTTCAAGTGCAACCGAATCCCGAACTACG
GCCTCCCTCCCTTGACAGGCCCGCAGACTGACACTGCCGGAGGCGGACTT
GAAACGACCAACGGACCCAGCATCGACCACCGTTCCTCGAGTATCGGTGT
CGCTAAAGACGTTTCAATCGTAGAACGCGCCGAGAAGCAAGGAAATGGTT
CCAGCCATGCACAAGACCATGGCCACCAGGCACCTGCCGACCACGGAAGG
CATCGCAATCATGAAGGCGTCGAGGAGACCGATCCAACACAACACAACCA
CAGCAGCGGCCACAACCAAGGCTGCACCACCATCAACGGAGACACCAACT
CCTCTATTACCCCGGGCGGTAATCCTGACCCTATACAGGAACCCGACCCG
AGGCGCGCTGGTCGGGGAGGCGAGCGTGGACAGCAAGGGGAAAGCGAACC
TTTGGGCGGTTCAGCTCAAGGTGATGCTAGTGGTAGCTCACTGGGGAGCG
CTGTTGCAATGGGGCACCGTCAGCCAGAAGGAACTCATGGTGCGAGCCTT
TACGGCGACAGCGGAAGCGTAGATGCTCGACGTTTATCACGGGGGATGAA
TGTGCTATCGGGAAGCCCTTGCGGCGGCGGTATTGATGGTGGCGGTGGCG
GTGGCGGTGGTGGTGGCGGCGGCGGCCGGAGCAACACCGTCGTAACACGG
TCTGAGGAAGAACCCGGATATGAAATCGATCGTTGTGAAAGCGACCTGGT
TCCGACGCGGGCTAAGGAACGACCTTCGGCCGGGCAAGAGCAGCGGTGCG
GGGCCGACAATCAGGCGGGACAAATCGAAAACAACAAAGAGGAGGGGGCC
GAATCGAGAACGAGAACTTCTTCGATAGACGTACTGAACGCCGGCAGGGC
GATTGCTTGTCGGGAGCACGCACTGGATGGCATGGTGTATCTAGGGCAGA
GGTGAGGCAGTAACCTGCCCCAGCGCATGGTTGCGCATGGTTGCGTACGT
TGCAAAGGACAGCACACGACGAATCATTCATGCCGTCGCTGCCACTCCAA
GGGGAAGGAGGGAAAACGATTTCAGAAACATGTCCGCGAGGTGGTCCCTC
TCGCCATCACGAAGCCCCGCCTCAGAGGGCAATGAAGTGCTCTGTGACGG
AAGCTATCTGTAAGAGCAATAAGAGCAACCAAGCACAATCGGATGTATCT
TGAGAATGATTAATGCGAGTGGGCTTTTTCTTTGTGGACTTGGCCCCGAC
TTTTGGAGCGAGCTTGGCTTGACAGCTAGCTTCTTGAGGAACGGAACGAA
CCTTTCTCTAAGGAGGAGCGCTCTGTGTTTCACGATGTTGGCCCTTCCCT
GCCCTCCTGAAACCGAAAGAGTGGATTTCCTTCACACGCGATTGAACCTC
GCCCTGTACAATACGCGAGTTTATCACACTTTGTGTGGTGTGAGGCTACC
AGGTACAACGCGGAAGACACGGGGGTTCCTGAGGCCAGCGCGTCACGCCC
CGTTGTCATCTTCGTCGAAGGACCCTGGATGTTTGACGCCCCACATGTGG
CACGACACACGAACAGGCGGCAGGTCCGCTCGACCAAATACGCACATGGG
GGAGAAGAATAGTTTGAATCTGTGCGCGGAGCATCGCTGTCTAATGCCGT
CATCGCCGGCGAAGAGTAGAAGTAGGAGAATTTTGTCACTGGTATTCGTC
ATGATCCTAACCTGCCAGAAATATAGTTCCAACCGAGCTTAGAGCAACGT
CGTCACCACCAAGAGAGGGAACGACTTTGTAGTGTGATAGTCCTCCTGCA
TGAGCTTCAGCCCCTATTCATACGCATCACTCGTGTAACCATCTCGCATG
TCGGAAAGGGCGTATTTCCTAGGGCTTGAGAGCGAGACGTTCACTTCGAA
GGACGTCAGCGACCTCATTCGCTTTATCGATACGGACGTCGATTTCTCTC
TAGACATCCGGGAAATGCGGTAAGCAGGAGAAGGGAGCAGAAGGGCAGTG
CAAAACCGTGTTTTTCCTCCGGAAGTGGGCTTCTTCGTAGATGAGGTTAC
TTCTGCAGAATGCTGTCGACGACGAGTTCCGCAAAGAGATATGTACCGTC
CACAGTCTTTTCGATTCGCAAGACCTTGAAACCGAGGTCGTTTTGTGGCA
AAACCGGGGTATTGCTCGTCTCCTGAAGTCATGATACTTGGAGGTTGAGC
CAGAATTTCGTGTACGCAAGTACGTTAACCTTACCCGGCGATCGAGATTC
GTTCATTACTCCTAGCGATGAGGTCCATTTTGCACGTTTTCCAAGCTACC
TCTTTCGTGGAGCATGGGTCTTCAGACAGATGCAATGGGCAGCAATTTTG
CAGAGTTTGGTCGGTTTTGACGCCCCTCGTGCGCATAACCCCGTTGTGTC
TATGGTGCTTGTTTCGGCAGGCTAGCGATTTCAAGACTACATGCCGACGA
AGACGAAGATGATGCCAGGACGAGCGAGGCCGGAAACCTTCTGCAGGTGC
TGGAGAGCTACATGCACCGAACGGGGGCACGATTCACGGACGTGTTCTTC
TTCTTGGACAGGCGG
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig157:39792..45106+

>mRNA_E-siliculosus-1a_F_contig157.3297.1 ID=mRNA_E-siliculosus-1a_F_contig157.3297.1|Name=mRNA_E-siliculosus-1a_F_contig157.3297.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=5352bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig157:39792..45106+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGACGCAGGACGTCCAGAGCACTACAGCAGCTACCCACCAACAACGCC
AGGGATGGTGGCCGAGGAGCAAGAGGGACTCGTCTCTAGCACGTCTCGGC
CTGCGAGTTACGGAGGCCAGCCAGCCTCCGGAGGGGCTGCGGCGAGCGGC
TCTCGGGCAGCGACAACTGGTTCTTCTCCAAGGCTGGAGCGCAACAGCAG
CAACGACGTCAACCGTACAAGAGATGGCCTCGTCAACCTTGCACCGTCAC
TAGGGCGCTACGGCAGTCGCGGACACAGCAGTTTGGCCGTGCCAGTAGCA
GGTGGACACGACCGAAGCGACGGCGGCAATGGGAAATCACGAACCGTTCC
GTCCTCGGAGCAGCACGGAGGCGGACAAGACGGTGGAAGGGTGCGGTCCA
AACACCAGGTCTCGCTGCGACCCATATCGCGAACGCAGCCTGGGTACGTC
TACAGCAAGAAGATGACTTTGGGTTGTACGCCGTCTCCGGCAAGCAAGAA
AGCACTTGCCAGGAAGAGGAGAACGCCTGCGGCAACTGGTGCCGGCGGGG
GCGTACCGGCGGTGAGGTCGATGCTCCCCTGGTGGCAAAACATTTACACT
CTGGTTCGCCAGGCGAACGTGAACGCACCCGGACAAGCCACAGGCTTGGA
AAGTCAAGATTCCAATGTGTTTCTACGCGGCACCCCAACAGGCGGTGCTG
TTGGAGGAGAACGGACGTCTCCGCACCAGCAACGAGTCTCGCCGACACCG
CCAGAAAGTAAACATATATTCGACGAGGGCGGTGGAGATGCCAACGAACA
ACAGCAATCGAACTCCGACAAGATTGAAAGGAGCCCCCTCAGCCCCAATG
GAGTGGATGCAATCCCCTCTTCCCAAAGAAACGATGGCGGGCAACACGTG
GAGAAAGCGTATGCTCACTACTCGAATCTCTTCGAGAACCCTCCACCAAC
CATGCCAACCGTAGACCAGTACATATTCGAGGATAGCATCACGTACGGGG
CAATCACGAAACGAGGGCAAAGCAAGGCCCTCCCGCTGAACGTAGCCAGC
GGGGGTGCTCTCGGGTTAGGACAGCCTGGCGGAGATTCTTCGAAGGGCGT
CGCGTTCGTTGGCGCCGGTGGAGACGACACTGAGTCGTACGTGGACCCAT
CAGCGTTGCTCTTTGCCGACGAAGACATCGACAAGATGGACGCAGGACGT
CCAGAGCACTACAGCAGCTACCCACCAACAACGCCAGGGATGGTGGCCGA
GGAGCAAGAGGGACTCGTCTCTAGCACGTCTCGGCCTGCGAGTTACGGAG
GCCAGCCAGCCTCCGGAGGGGCTGCGGCGAGCGGCTCTCGGGCAGCGACA
ACTGGTTCTTCTCCAAGGCTGGAGCGCAACAGCAGCAACGACGTCAACCG
TACAAGAGATGGCCTCGTCAACCTTGCACCGTCACTAGGGCGCTACGGCA
GTCGCGGACACAGCAGTTTGGCCGTGCCAGTAGCAGGTGGACACGACCGA
AGCGACGGCGGCAATGGGAAATCACGAACCGTTCCGTCCTCGGAGCAGCA
CGGAGGCGGACAAGACGGTGGAAGGGTGCGGTCCAAACACCAGGTCTCGC
TGCGACCCATATCGCGAACGCAGCCTGGGTACGTCTACAGCAAGAAGATG
ACTTTGGGTTGTACGCCGTCTCCGGCAAGCAAGAAAGCACTTGCCAGGAA
GAGGAGAACGCCTGCGGCAACTGGTGCCGGCGGGGGCGTACCGGCGGTGA
GGTCGATGCTCCCCTGGTGGCAAAACATTTACACTCTGGTTCGCCAGGCG
AACGTGAACGCACCCGGACAAGCCACAGGCTTGGAAAGTCAAGATTCCAA
TGTGTTTCTACGCGGCACCCCAACAGGCGGTGCTGTTGGAGGAGAACGGA
CGTCTCCGCACCAGCAACGAGTCTCGCCGACACCGCCAGAAAGTAAACAT
ATATTCGACGAGGGCGGTGGAGATGCCAACGAACAACAGCAATCGAACTC
CGACAAGATTGAAAGGAGCCCCCTCAGCCCCAATGGAGTGGATGCAATCC
CCTCTTCCCAAAGAAACGATGGCGGGCAACACGTGGAGAAAGCGTATGCT
CACTACTCGAATCTCTTCGAGAACCCTCCACCAACCATGCCAACCGTAGA
CCAGTACATATTCGAGGATAGCATCACGTACGGGGCAATCACGAAACGAG
GGCAAAGCAAGGCCCTCCCGCTGAACGTAGCCAGCGGGGGTGCTCTCGGG
TTAGGACAGCCTGGCGGAGATTCTTCGAAGGGCGTCGCGTTCGTTGGCGC
CGGTGGAGACGACACTGAGTCGTACGTGGACCCATCAGCGTTGCTCTTTG
CCGACGAAGACATCGACAAGTTACTCAAGTTTTTCGACAAAGCTGGGCGC
GGGGAAGACAAGGTCACGCTTGAGGAGATGATTTCGGGCTTTCGCAGGAT
ACGGAGGAAGTGGGCCACCGTTAAGGCCGAAAGAGCTGGTCGAGTCGTTC
TGGCCAAGGTCGTGCGGTTGATGAGACGGGCGGGGATGTCTCTCGAAGAG
TGGTTCAAGTTCATGGATATATCTCAGTTACTCAAGTTTTTCGACAAAGC
TGGGCGCGGGGAAGACAAGGTCACGCTTGAGGAGATGATTTCGGGCTTTC
GCAGGATACGGAGGAAGTGGGCCACCGTTAAGGCCGAAAGAGCTGGTCGA
GTCGTTCTGGCCAAGGTCGTGCGGTTGATGAGACGGGCGGGGATGTCTCT
CGAAGAGTGGTTCAAGTTCATGGATATATCTCAGAATGGACACGGTGACG
GAAAGCTGACCGCTTTGGAGCTCCGAGTGGGCTTTGAGCGTCTGGCCACC
CACATCGCTCGACGCGAGTGTTGCTGCCGTGCTTTCAAGTGCAACCGAAT
CCCGAACTACGGCCTCCCTCCCTTGACAGGCCCGCAGACTGACACTGCCG
GAGGCGGACTTGAAACGACCAACGGACCCAGCATCGACCACCGTTCCTCG
AGTATCGGTGTCGCTAAAGACGTTTCAATCGTAGAACGCGCCGAGAAGCA
AGGAAATGGTTCCAGCCATGCACAAGACCATGGCCACCAGGCACCTGCCG
ACCACGGAAGGCATCGCAATCATGAAGGCGTCGAGGAGACCGATCCAACA
CAACACAACCACAGCAGCGGCCACAACCAAGGCTGCACCACCATCAACGG
AGACACCAACTCCTCTATTACCCCGGGCGGTAATCCTGACCCTATACAGG
AACCCGACCCGAGGCGCGCTGGTCGGGGAGGCGAGCGTGGACAGCAAGGG
GAAAGCGAACCTTTGGGCGGTTCAGCTCAAGGTGATGCTAGTGGTAGCTC
ACTGGGGAGCGCTGTTGCAATGGGGCACCGTCAGCCAGAAGGAACTCATG
GTGCGAGCCTTTACGGCGACAGCGGAAGCGTAGATGCTCGACGTTTATCA
CGGGGGATGAATGTGCTATCGGGAAGCCCTTGCGGCGGCGGTATTGATGG
TGGCGGTGGCGGTGGCGGTGGTGGTGGCGGCGGCGGCCGGAGCAACACCG
TCGTAACACGGTCTGAGGAAGAACCCGGATATGAAATCGATCGTTGTGAA
AGCGACCTGGTTCCGACGCGGGCTAAGGAACGACCTTCGGCCGGGCAAGA
GCAGCGGTGCGGGGCCGACAATCAGGCGGGACAAATCGAAAACAACAAAG
AGGAGGGGGCCGAATCGAGAACGAGAACTTCTTCGATAGACGTACTGAAC
GCCGGCAGGGCGATTGCTTGTCGGGAGCACGCACTGGATGGCATGGTGTA
TCTAGGGCAGAGAATGGACACGGTGACGGAAAGCTGACCGCTTTGGAGCT
CCGAGTGGGCTTTGAGCGTCTGGCCACCCACATCGCTCGACGCGAGTGTT
GCTGCCGTGCTTTCAAGTGCAACCGAATCCCGAACTACGGCCTCCCTCCC
TTGACAGGCCCGCAGACTGACACTGCCGGAGGCGGACTTGAAACGACCAA
CGGACCCAGCATCGACCACCGTTCCTCGAGTATCGGTGTCGCTAAAGACG
TTTCAATCGTAGAACGCGCCGAGAAGCAAGGAAATGGTTCCAGCCATGCA
CAAGACCATGGCCACCAGGCACCTGCCGACCACGGAAGGCATCGCAATCA
TGAAGGCGTCGAGGAGACCGATCCAACACAACACAACCACAGCAGCGGCC
ACAACCAAGGCTGCACCACCATCAACGGAGACACCAACTCCTCTATTACC
CCGGGCGGTAATCCTGACCCTATACAGGAACCCGACCCGAGGCGCGCTGG
TCGGGGAGGCGAGCGTGGACAGCAAGGGGAAAGCGAACCTTTGGGCGGTT
CAGCTCAAGGTGATGCTAGTGGTAGCTCACTGGGGAGCGCTGTTGCAATG
GGGCACCGTCAGCCAGAAGGAACTCATGGTGCGAGCCTTTACGGCGACAG
CGGAAGCGTAGATGCTCGACGTTTATCACGGGGGATGAATGTGCTATCGG
GAAGCCCTTGCGGCGGCGGTATTGATGGTGGCGGTGGCGGTGGCGGTGGT
GGTGGCGGCGGCGGCCGGAGCAACACCGTCGTAACACGGTCTGAGGAAGA
ACCCGGATATGAAATCGATCGTTGTGAAAGCGACCTGGTTCCGACGCGGG
CTAAGGAACGACCTTCGGCCGGGCAAGAGCAGCGGTGCGGGGCCGACAAT
CAGGCGGGACAAATCGAAAACAACAAAGAGGAGGGGGCCGAATCGAGAAC
GAGAACTTCTTCGATAGACGTACTGAACGCCGGCAGGGCGATTGCTTGTC
GGGAGCACGCACTGGATGGCATGGTGTATCTAGGGCAGAGGGCGTATTTC
CTAGGGCTTGAGAGCGAGACGTTCACTTCGAAGGACGTCAGCGACCTCAT
TCGCTTTATCGATACGGACGTCGATTTCTCTCTAGACATCCGGGAAATGC
GGGCGTATTTCCTAGGGCTTGAGAGCGAGACGTTCACTTCGAAGGACGTC
AGCGACCTCATTCGCTTTATCGATACGGACGTCGATTTCTCTCTAGACAT
CCGGGAAATGCGGCTAGCGATTTCAAGACTACATGCCGACGAAGACGAAG
ATGATGCCAGGACGAGCGAGGCCGGAAACCTTCTGCAGGTGCTGGAGAGC
TACATGCACCGAACGGGGGCACGATTCACGGACGTGTTCTTCTTCTTGGA
CAGGCGGGCTAGCGATTTCAAGACTACATGCCGACGAAGACGAAGATGAT
GCCAGGACGAGCGAGGCCGGAAACCTTCTGCAGGTGCTGGAGAGCTACAT
GCACCGAACGGGGGCACGATTCACGGACGTGTTCTTCTTCTTGGACAGGC
GG
back to top