mRNA_E-siliculosus-1a_F_contig15541.3211.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig15541.3211.1
Unique NamemRNA_E-siliculosus-1a_F_contig15541.3211.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig15541.3211.1 vs. uniprot
Match: A0A651E183_HALSX (Choline dehydrogenase n=1 Tax=Halomonas sp. TaxID=1486246 RepID=A0A651E183_HALSX)

HSP 1 Score: 552 bits (1423), Expect = 1.240e-193
Identity = 282/317 (88.96%), Postives = 295/317 (93.06%), Query Frame = 1
Query:    1 RSNLTLWHSAQVNRLLFERQPFERQTVEQVDTLRCTGVEVEREGKPQRAMVNGEEGGGEVVLCAGAIGSPHLLQLSGVGPAELLREHGVELVHELPGVGENLQDHLQIRSVYKITNGKTLNAMASTLLGKAGIGLEYLLKRSGPMSMAPSQLGAFTRSGAEQTHPNIQYHVQPLSLEAFGQPLHSYPAITASVCNLNPTSRGTVRLKSSDPRQAPAISPNYLSTPEDQKVAADSLRVTRRIAEQPAFAKYAPEEVKPGVEYQTDDELTRLAGDIGTTIFHPVGTTRMGRDDDELAVVDARLRVRGISGLRVADADVM 951
            RSNLTLWHS QVNRL+F+R P ERQ  EQ D L+CTGVEVEREGK QRA V+GE     VVLCAGAIGSPHLLQLSGVGPAELLREHGVELVHELPGVGENLQDHLQIRSVY+I NGKTLN+MA+TL GKAGIGLEYLL+RSGPMSMAPSQLGAFTRS  EQTHPNIQYHVQPLSLEAFGQPLH YPAITASVCNLNPTSRGTVRLKS DPRQAPAISPNYLSTPED+KVAADSLRVTRRIAEQPAFAKYAPEEVKPGVEYQ+DDEL RLAGDIGTTIFHPVGTTRMGR+DDE+AVVDARL+VRGISGLRVADA VM
Sbjct:  222 RSNLTLWHSTQVNRLVFDRLPLERQASEQTDILKCTGVEVEREGKTQRATVSGE-----VVLCAGAIGSPHLLQLSGVGPAELLREHGVELVHELPGVGENLQDHLQIRSVYRINNGKTLNSMANTLWGKAGIGLEYLLRRSGPMSMAPSQLGAFTRSAEEQTHPNIQYHVQPLSLEAFGQPLHPYPAITASVCNLNPTSRGTVRLKSGDPRQAPAISPNYLSTPEDRKVAADSLRVTRRIAEQPAFAKYAPEEVKPGVEYQSDDELARLAGDIGTTIFHPVGTTRMGREDDEMAVVDARLKVRGISGLRVADAGVM 533          
BLAST of mRNA_E-siliculosus-1a_F_contig15541.3211.1 vs. uniprot
Match: A0A7Y6R925_9GAMM (GMC family oxidoreductase N-terminal domain-containing protein n=5 Tax=Halomonas TaxID=2745 RepID=A0A7Y6R925_9GAMM)

HSP 1 Score: 526 bits (1354), Expect = 3.580e-183
Identity = 271/317 (85.49%), Postives = 288/317 (90.85%), Query Frame = 1
Query:    1 RSNLTLWHSAQVNRLLFERQPFERQTVEQVDTLRCTGVEVEREGKPQRAMVNGEEGGGEVVLCAGAIGSPHLLQLSGVGPAELLREHGVELVHELPGVGENLQDHLQIRSVYKITNGKTLNAMASTLLGKAGIGLEYLLKRSGPMSMAPSQLGAFTRSGAEQTHPNIQYHVQPLSLEAFGQPLHSYPAITASVCNLNPTSRGTVRLKSSDPRQAPAISPNYLSTPEDQKVAADSLRVTRRIAEQPAFAKYAPEEVKPGVEYQTDDELTRLAGDIGTTIFHPVGTTRMGRDDDELAVVDARLRVRGISGLRVADADVM 951
            R NLTLWHS QVNRLLFE+Q          + LRCTGVEVER+G+ QRAMV+GE     VVLCAGAIG+PHLLQLSGVG  ELL E GVELVHELPGVGENLQDHLQIRS+YKITNGKTLNA+ASTLLGKAGIGLEYLLKRSGPMSMAPSQLGAFTRS AEQT+PNIQYHVQPLSLEAFGQPLH YPAITASVCNLNPTSRGTVRLKSSDPRQAPAISPNYLS+PED+KVAADSLRVTRRIAEQPAFA+YAPEEVKPGVEYQTDDELTRLAGDIGTTIFHPVGT +MGR+DD +AVVD+RLRV GISGLRVADA +M
Sbjct:  229 RDNLTLWHSTQVNRLLFEKQG---------EALRCTGVEVERDGQVQRAMVSGE-----VVLCAGAIGTPHLLQLSGVGSRELLNEQGVELVHELPGVGENLQDHLQIRSIYKITNGKTLNAIASTLLGKAGIGLEYLLKRSGPMSMAPSQLGAFTRSSAEQTYPNIQYHVQPLSLEAFGQPLHPYPAITASVCNLNPTSRGTVRLKSSDPRQAPAISPNYLSSPEDRKVAADSLRVTRRIAEQPAFARYAPEEVKPGVEYQTDDELTRLAGDIGTTIFHPVGTAKMGREDDAMAVVDSRLRVHGISGLRVADASIM 531          
BLAST of mRNA_E-siliculosus-1a_F_contig15541.3211.1 vs. uniprot
Match: A0A511UNJ4_9GAMM (Choline dehydrogenase n=1 Tax=Halovibrio variabilis TaxID=31910 RepID=A0A511UNJ4_9GAMM)

HSP 1 Score: 520 bits (1339), Expect = 1.120e-180
Identity = 266/317 (83.91%), Postives = 281/317 (88.64%), Query Frame = 1
Query:    1 RSNLTLWHSAQVNRLLFERQPFERQTVEQVDTLRCTGVEVEREGKPQRAMVNGEEGGGEVVLCAGAIGSPHLLQLSGVGPAELLREHGVELVHELPGVGENLQDHLQIRSVYKITNGKTLNAMASTLLGKAGIGLEYLLKRSGPMSMAPSQLGAFTRSGAEQTHPNIQYHVQPLSLEAFGQPLHSYPAITASVCNLNPTSRGTVRLKSSDPRQAPAISPNYLSTPEDQKVAADSLRVTRRIAEQPAFAKYAPEEVKPGVEYQTDDELTRLAGDIGTTIFHPVGTTRMGRDDDELAVVDARLRVRGISGLRVADADVM 951
            R NLTLWHS QVNRLLFE         EQ  T RC GVE+ER GK QRA++N E G  EVVLC GAIG+PHLLQLSGVGP E+LREHGVE+VH+LPGVGENLQDHLQIRSVYKITNGKTLNAM STL GKAGI +EYLLKRSGPMSMAPSQLGAFTRS  +Q HPNI+YHVQPLSLEAFGQPLH YPAITASVCNLNPTSRGTVRLKSSDPRQAPAISPNYLSTPED+KVAADSLRVTRRIAEQPAFAKY PEEVKPG+EYQ+DDEL RLAGDIGTTIFHPVGT RMG +DDE+AVVD RLRVRGISGLRVADA VM
Sbjct:  234 RGNLTLWHSTQVNRLLFE---------EQAGTPRCAGVELERGGKVQRAVLNKERGNAEVVLCTGAIGTPHLLQLSGVGPGEVLREHGVEVVHDLPGVGENLQDHLQIRSVYKITNGKTLNAMTSTLWGKAGIAMEYLLKRSGPMSMAPSQLGAFTRSTPDQPHPNIEYHVQPLSLEAFGQPLHPYPAITASVCNLNPTSRGTVRLKSSDPRQAPAISPNYLSTPEDRKVAADSLRVTRRIAEQPAFAKYTPEEVKPGLEYQSDDELARLAGDIGTTIFHPVGTARMGSEDDEMAVVDPRLRVRGISGLRVADASVM 541          
BLAST of mRNA_E-siliculosus-1a_F_contig15541.3211.1 vs. uniprot
Match: A0A653VV55_9GAMM (Alcohol dehydrogenase (Acceptor) n=21 Tax=root TaxID=1 RepID=A0A653VV55_9GAMM)

HSP 1 Score: 518 bits (1335), Expect = 2.830e-180
Identity = 267/317 (84.23%), Postives = 282/317 (88.96%), Query Frame = 1
Query:    1 RSNLTLWHSAQVNRLLFERQPFERQTVEQVDTLRCTGVEVEREGKPQRAMVNGEEGGGEVVLCAGAIGSPHLLQLSGVGPAELLREHGVELVHELPGVGENLQDHLQIRSVYKITNGKTLNAMASTLLGKAGIGLEYLLKRSGPMSMAPSQLGAFTRSGAEQTHPNIQYHVQPLSLEAFGQPLHSYPAITASVCNLNPTSRGTVRLKSSDPRQAPAISPNYLSTPEDQKVAADSLRVTRRIAEQPAFAKYAPEEVKPGVEYQTDDELTRLAGDIGTTIFHPVGTTRMGRDDDELAVVDARLRVRGISGLRVADADVM 951
            R NLTLWHS QVNRLLFE+           + LRCTGVEVEREG P R M N E     VVLCAGAIG+PHLLQLSGVGPAE LR+HGVE+VHELPGVGENLQDHLQIRS+Y+ITNGKTLNA+ASTL GKAGIGLEYL KRSGPMSMAPSQLGAFTRS  +Q HPNI+YHVQPLSLEAFGQPLH YPAITASVCNLNPTSRGTVRLKSSDPRQAPAISPNYLSTPED+KVAADSLRVTRRIAEQPAFAKYAPEEVKPGVEYQ+DDEL RLAGDIGTTIFHPVGT RMG++DD +AVVDARLRVRGISGLRVADA VM
Sbjct:  228 RKNLTLWHSTQVNRLLFEKS---------ANMLRCTGVEVEREGSPLRVMANRE-----VVLCAGAIGTPHLLQLSGVGPAESLRKHGVEVVHELPGVGENLQDHLQIRSIYRITNGKTLNAIASTLWGKAGIGLEYLFKRSGPMSMAPSQLGAFTRSTKDQPHPNIEYHVQPLSLEAFGQPLHPYPAITASVCNLNPTSRGTVRLKSSDPRQAPAISPNYLSTPEDRKVAADSLRVTRRIAEQPAFAKYAPEEVKPGVEYQSDDELARLAGDIGTTIFHPVGTARMGQEDDAMAVVDARLRVRGISGLRVADASVM 530          
BLAST of mRNA_E-siliculosus-1a_F_contig15541.3211.1 vs. uniprot
Match: A0A455UKJ1_9GAMM (GMC_OxRdtase_N domain-containing protein n=1 Tax=Halomonas sulfidaeris TaxID=115553 RepID=A0A455UKJ1_9GAMM)

HSP 1 Score: 508 bits (1309), Expect = 5.080e-179
Identity = 260/317 (82.02%), Postives = 281/317 (88.64%), Query Frame = 1
Query:    1 RSNLTLWHSAQVNRLLFERQPFERQTVEQVDTLRCTGVEVEREGKPQRAMVNGEEGGGEVVLCAGAIGSPHLLQLSGVGPAELLREHGVELVHELPGVGENLQDHLQIRSVYKITNGKTLNAMASTLLGKAGIGLEYLLKRSGPMSMAPSQLGAFTRSGAEQTHPNIQYHVQPLSLEAFGQPLHSYPAITASVCNLNPTSRGTVRLKSSDPRQAPAISPNYLSTPEDQKVAADSLRVTRRIAEQPAFAKYAPEEVKPGVEYQTDDELTRLAGDIGTTIFHPVGTTRMGRDDDELAVVDARLRVRGISGLRVADADVM 951
            R+NLTLWHS QVNRL+F  Q            LRC G+EVER+G+ QR  V+GE     VVLCAGAIG+PHLLQLSGVGPAEL+REHG+ELVH+LPGVGENLQDHLQIRSVYKITNGKTLNA+ASTL GKAGIG EYL+KRSGPMSMAPSQLGAFTRS  EQ HPNIQYHVQPLSLEAFGQPLH YPAITASVCNLNPTSRGTVRLKSS+PRQAPAISPN+LS+PED+KVAADSLRVTRRIAEQPAFAKYAPEEVKPGVEYQTDDEL RLAGDIGTTIFHPVGT +MGR++D +AVVD RLRVRGI GLRVADA +M
Sbjct:   53 RNNLTLWHSTQVNRLVFAGQ---------AGALRCAGIEVERDGEVQRVTVSGE-----VVLCAGAIGTPHLLQLSGVGPAELMREHGIELVHDLPGVGENLQDHLQIRSVYKITNGKTLNAIASTLWGKAGIGWEYLVKRSGPMSMAPSQLGAFTRSTEEQVHPNIQYHVQPLSLEAFGQPLHPYPAITASVCNLNPTSRGTVRLKSSNPRQAPAISPNHLSSPEDRKVAADSLRVTRRIAEQPAFAKYAPEEVKPGVEYQTDDELARLAGDIGTTIFHPVGTAKMGREEDAMAVVDGRLRVRGIGGLRVADASIM 355          
BLAST of mRNA_E-siliculosus-1a_F_contig15541.3211.1 vs. uniprot
Match: A0A2A3XDV8_9GAMM (Choline dehydrogenase n=2 Tax=Halomonas TaxID=2745 RepID=A0A2A3XDV8_9GAMM)

HSP 1 Score: 508 bits (1308), Expect = 2.610e-176
Identity = 265/317 (83.60%), Postives = 276/317 (87.07%), Query Frame = 1
Query:    1 RSNLTLWHSAQVNRLLFERQPFERQTVEQVDTLRCTGVEVEREGKPQRAMVNGEEGGGEVVLCAGAIGSPHLLQLSGVGPAELLREHGVELVHELPGVGENLQDHLQIRSVYKITNGKTLNAMASTLLGKAGIGLEYLLKRSGPMSMAPSQLGAFTRSGAEQTHPNIQYHVQPLSLEAFGQPLHSYPAITASVCNLNPTSRGTVRLKSSDPRQAPAISPNYLSTPEDQKVAADSLRVTRRIAEQPAFAKYAPEEVKPGVEYQTDDELTRLAGDIGTTIFHPVGTTRMGRDDDELAVVDARLRVRGISGLRVADADVM 951
            R NLTLWHS QVNRL F          E+    RC+GVEVER G  QRA V+GE     VVLCAGAIG+PHLLQLSGVGPAELLR+HGV LVHELPGVGENLQDHLQIRSVYKITNGKTLNAMASTL GKAGIGLEYLLKRSGPMSMAPSQLGAFTRS  E  HPNIQYHVQPLSLEAFGQPLH+YPAITASVCNLNPTSRGTVRLKSSDP QAPAISPNYLSTPED+KVAADSLRVTR IAEQPAF KYAPEEVKPG EYQ+DDEL RLAGDIGTTIFHPVGT RMGR DD +AVVDARLRVRGI+GLRVADA +M
Sbjct:  222 RDNLTLWHSTQVNRLCFN---------EEGGMPRCSGVEVERNGSAQRATVSGE-----VVLCAGAIGTPHLLQLSGVGPAELLRKHGVTLVHELPGVGENLQDHLQIRSVYKITNGKTLNAMASTLWGKAGIGLEYLLKRSGPMSMAPSQLGAFTRSSPEHAHPNIQYHVQPLSLEAFGQPLHAYPAITASVCNLNPTSRGTVRLKSSDPHQAPAISPNYLSTPEDRKVAADSLRVTRHIAEQPAFNKYAPEEVKPGAEYQSDDELARLAGDIGTTIFHPVGTARMGRKDDVMAVVDARLRVRGINGLRVADASIM 524          
BLAST of mRNA_E-siliculosus-1a_F_contig15541.3211.1 vs. uniprot
Match: A0A0D7UVA7_9GAMM (Choline dehydrogenase n=40 Tax=Halomonadaceae TaxID=28256 RepID=A0A0D7UVA7_9GAMM)

HSP 1 Score: 494 bits (1273), Expect = 6.720e-171
Identity = 255/318 (80.19%), Postives = 275/318 (86.48%), Query Frame = 1
Query:    1 RSNLTLWHSAQVNRLLF-ERQPFERQTVEQVDTLRCTGVEVEREGKPQRAMVNGEEGGGEVVLCAGAIGSPHLLQLSGVGPAELLREHGVELVHELPGVGENLQDHLQIRSVYKITNGKTLNAMASTLLGKAGIGLEYLLKRSGPMSMAPSQLGAFTRSGAEQTHPNIQYHVQPLSLEAFGQPLHSYPAITASVCNLNPTSRGTVRLKSSDPRQAPAISPNYLSTPEDQKVAADSLRVTRRIAEQPAFAKYAPEEVKPGVEYQTDDELTRLAGDIGTTIFHPVGTTRMGRDDDELAVVDARLRVRGISGLRVADADVM 951
            R NLTLWHS QVNRL F E QP          TLRCTGVEV R GKPQR     E     VVLCAGAIGSPHLLQLSG+GPAE LREHG+E+VH+LPGVGENLQDHLQIRSVY+++N KTLNA+ASTL G+AGIG EY+ KR+GPMSMAPSQLGAFTRS  +Q +PNIQYHVQPLSLEAFGQPLH YPAITASVCNLNPTSRGTVRLKS+DPRQAPAISPNYLSTPED+KVAADSLRVTRRIAEQPAFAKY PEEVKPGVEYQTDDELTRLAGDIGTTIFHPVGTTRMG+ DD +AVVD +LRV G+ GLR+ADA VM
Sbjct:  227 RDNLTLWHSTQVNRLCFDEEQP----------TLRCTGVEVVRSGKPQRVQARKE-----VVLCAGAIGSPHLLQLSGIGPAEHLREHGIEVVHDLPGVGENLQDHLQIRSVYRVSNAKTLNAIASTLWGRAGIGWEYVTKRTGPMSMAPSQLGAFTRSSDDQPYPNIQYHVQPLSLEAFGQPLHPYPAITASVCNLNPTSRGTVRLKSADPRQAPAISPNYLSTPEDRKVAADSLRVTRRIAEQPAFAKYLPEEVKPGVEYQTDDELTRLAGDIGTTIFHPVGTTRMGKRDDPMAVVDEKLRVLGVVGLRIADAGVM 529          
BLAST of mRNA_E-siliculosus-1a_F_contig15541.3211.1 vs. uniprot
Match: A0A1U9R5X0_9GAMM (Choline dehydrogenase n=2 Tax=Halomonas TaxID=2745 RepID=A0A1U9R5X0_9GAMM)

HSP 1 Score: 491 bits (1263), Expect = 1.690e-169
Identity = 254/317 (80.13%), Postives = 269/317 (84.86%), Query Frame = 1
Query:    1 RSNLTLWHSAQVNRLLFERQPFERQTVEQVDTLRCTGVEVEREGKPQRAMVNGEEGGGEVVLCAGAIGSPHLLQLSGVGPAELLREHGVELVHELPGVGENLQDHLQIRSVYKITNGKTLNAMASTLLGKAGIGLEYLLKRSGPMSMAPSQLGAFTRSGAEQTHPNIQYHVQPLSLEAFGQPLHSYPAITASVCNLNPTSRGTVRLKSSDPRQAPAISPNYLSTPEDQKVAADSLRVTRRIAEQPAFAKYAPEEVKPGVEYQTDDELTRLAGDIGTTIFHPVGTTRMGRDDDELAVVDARLRVRGISGLRVADADVM 951
            R NLTLWHS QVN+L FE++          DT RC  VEV R G+P R     E     VVLCAGAIGSPHLL LSGVGPAE LREH + LVH+LPGVGENLQDHLQIRSVY+++N KTLN MASTLLGKA IG EYL KR+GPMSMAPSQLGAFTRS  E THPNIQYHVQPLSLEAFGQPLH YPAITASVCNLNPTSRGTVRLKS DPRQAP+ISPNYLSTPED+KVAADSLRVTRRIAEQPAFAKYAPEEVKPGVEYQTDDEL RLAGDIGTTIFHPVGTTRMGR DD +AVVDARLRVRG+ GLRVADA +M
Sbjct:  222 RDNLTLWHSTQVNQLCFEKEQ---------DTPRCCAVEVVRNGEPVRVSAQKE-----VVLCAGAIGSPHLLLLSGVGPAEHLREHNIALVHDLPGVGENLQDHLQIRSVYRVSNAKTLNVMASTLLGKAAIGWEYLTKRTGPMSMAPSQLGAFTRSSDEYTHPNIQYHVQPLSLEAFGQPLHPYPAITASVCNLNPTSRGTVRLKSCDPRQAPSISPNYLSTPEDRKVAADSLRVTRRIAEQPAFAKYAPEEVKPGVEYQTDDELARLAGDIGTTIFHPVGTTRMGRADDPMAVVDARLRVRGVKGLRVADAGIM 524          
BLAST of mRNA_E-siliculosus-1a_F_contig15541.3211.1 vs. uniprot
Match: A0A7Z7MXZ2_9GAMM (Choline dehydrogenase n=1 Tax=Halomonas sp. hl-4 TaxID=1761789 RepID=A0A7Z7MXZ2_9GAMM)

HSP 1 Score: 479 bits (1232), Expect = 9.060e-165
Identity = 247/317 (77.92%), Postives = 270/317 (85.17%), Query Frame = 1
Query:    1 RSNLTLWHSAQVNRLLFERQPFERQTVEQVDTLRCTGVEVEREGKPQRAMVNGEEGGGEVVLCAGAIGSPHLLQLSGVGPAELLREHGVELVHELPGVGENLQDHLQIRSVYKITNGKTLNAMASTLLGKAGIGLEYLLKRSGPMSMAPSQLGAFTRSGAEQTHPNIQYHVQPLSLEAFGQPLHSYPAITASVCNLNPTSRGTVRLKSSDPRQAPAISPNYLSTPEDQKVAADSLRVTRRIAEQPAFAKYAPEEVKPGVEYQTDDELTRLAGDIGTTIFHPVGTTRMGRDDDELAVVDARLRVRGISGLRVADADVM 951
            R NLTLWHS QVNRL FE      Q         C+G+EV R+ K     VN      EVVLCAGAIGSPHLLQLSGVGPA+LLREH +++VH+LPGVGENLQDHLQIRSVY+++  KTLNAMASTL GKAGIG EYL KR+GPMSMAPSQLGAFTRS  + +HPNI+YHVQPLSLEAFGQPLH YPAITASVCNLNPTSRGTVRLKS DPRQAPAISPNYLSTPED+KVAADSLRVTR+IAEQPAFAKY PEEVKPG+EYQ+DDEL RLAGDIGTTIFHPVGT RMGR+DD +AVVD++LRVRGISGLRVADA VM
Sbjct:  221 RGNLTLWHSTQVNRLCFEHNEGATQ---------CSGIEVVRDAKT--VQVNASR---EVVLCAGAIGSPHLLQLSGVGPADLLREHDIKVVHDLPGVGENLQDHLQIRSVYRVSKAKTLNAMASTLWGKAGIGWEYLTKRTGPMSMAPSQLGAFTRSSDDYSHPNIEYHVQPLSLEAFGQPLHPYPAITASVCNLNPTSRGTVRLKSRDPRQAPAISPNYLSTPEDRKVAADSLRVTRKIAEQPAFAKYQPEEVKPGLEYQSDDELARLAGDIGTTIFHPVGTARMGREDDSMAVVDSQLRVRGISGLRVADASVM 523          
BLAST of mRNA_E-siliculosus-1a_F_contig15541.3211.1 vs. uniprot
Match: UPI00201F7AB8 (GMC family oxidoreductase N-terminal domain-containing protein n=1 Tax=Halomonas olivaria TaxID=390919 RepID=UPI00201F7AB8)

HSP 1 Score: 470 bits (1210), Expect = 2.020e-161
Identity = 244/317 (76.97%), Postives = 267/317 (84.23%), Query Frame = 1
Query:    1 RSNLTLWHSAQVNRLLFERQPFERQTVEQVDTLRCTGVEVEREGKPQRAMVNGEEGGGEVVLCAGAIGSPHLLQLSGVGPAELLREHGVELVHELPGVGENLQDHLQIRSVYKITNGKTLNAMASTLLGKAGIGLEYLLKRSGPMSMAPSQLGAFTRSGAEQTHPNIQYHVQPLSLEAFGQPLHSYPAITASVCNLNPTSRGTVRLKSSDPRQAPAISPNYLSTPEDQKVAADSLRVTRRIAEQPAFAKYAPEEVKPGVEYQTDDELTRLAGDIGTTIFHPVGTTRMGRDDDELAVVDARLRVRGISGLRVADADVM 951
            R NLTLWHS QVNRL  E         ++   LRC GVEV R GK  +A    E     VVLCAGAIG+PHLL LSG+GPAE LREH +E++H+LPGVGENLQDHLQIRSVY+++N KTLNAMASTL+GK GIG EYL +R+GPMSMAPSQLGAFTRS  E  HPNIQYHVQPLSLEAFGQPLH YPAITASVCNLNPTSRGTVRLKS DPRQAP+ISPNYLSTPED+KVAADSLRVTRRIA QPAFAKYAPEEVKPG+EYQTD+EL  LAGDIGTTIFHPVGTTRMG+ DD +AVVDA+LRVRG+ GLRVADA VM
Sbjct:  222 RDNLTLWHSTQVNRLHIE---------DENGVLRCGGVEVVRGGKVIKAKALKE-----VVLCAGAIGTPHLLLLSGIGPAEHLREHEIEVIHDLPGVGENLQDHLQIRSVYRVSNAKTLNAMASTLMGKVGIGWEYLTRRTGPMSMAPSQLGAFTRSADEYPHPNIQYHVQPLSLEAFGQPLHPYPAITASVCNLNPTSRGTVRLKSRDPRQAPSISPNYLSTPEDRKVAADSLRVTRRIAGQPAFAKYAPEEVKPGIEYQTDEELALLAGDIGTTIFHPVGTTRMGKVDDPMAVVDAKLRVRGVRGLRVADAGVM 524          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig15541.3211.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A651E183_HALSX1.240e-19388.96Choline dehydrogenase n=1 Tax=Halomonas sp. TaxID=... [more]
A0A7Y6R925_9GAMM3.580e-18385.49GMC family oxidoreductase N-terminal domain-contai... [more]
A0A511UNJ4_9GAMM1.120e-18083.91Choline dehydrogenase n=1 Tax=Halovibrio variabili... [more]
A0A653VV55_9GAMM2.830e-18084.23Alcohol dehydrogenase (Acceptor) n=21 Tax=root Tax... [more]
A0A455UKJ1_9GAMM5.080e-17982.02GMC_OxRdtase_N domain-containing protein n=1 Tax=H... [more]
A0A2A3XDV8_9GAMM2.610e-17683.60Choline dehydrogenase n=2 Tax=Halomonas TaxID=2745... [more]
A0A0D7UVA7_9GAMM6.720e-17180.19Choline dehydrogenase n=40 Tax=Halomonadaceae TaxI... [more]
A0A1U9R5X0_9GAMM1.690e-16980.13Choline dehydrogenase n=2 Tax=Halomonas TaxID=2745... [more]
A0A7Z7MXZ2_9GAMM9.060e-16577.92Choline dehydrogenase n=1 Tax=Halomonas sp. hl-4 T... [more]
UPI00201F7AB82.020e-16176.97GMC family oxidoreductase N-terminal domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig15541contigE-siliculosus-1a_F_contig15541:3..953 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size951
Model size951
Exons1
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko00002,ko01000
Best eggNOG OGNA|NA|NA
Best tax levelOceanospirillales
COG Functional cat.E
EC1.1.99.1
EggNOG OGs1MV19@1224,1RMD2@1236,1XH63@135619,COG2303@1,COG2303@2
EggNOG free text desc.Belongs to the GMC oxidoreductase family
KEGG ModuleM00555
KEGG Pathwayko00260,ko01100,map00260,map01100
KEGG ReactionR01025
KEGG koko:K00108
KEGG rclassRC00087
Preferred namebetA
Seed eggNOG ortholog1504981.KO116_3052
Seed ortholog evalue4.4e-148
Seed ortholog score530.8
Taxonomic scopeBacteria
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928067.7331955-CDS-E-siliculosus-1a_F_contig15541:2..9531622928067.7331955-CDS-E-siliculosus-1a_F_contig15541:2..953Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig15541 3..953 +
1696318793.2711172-CDS-E-siliculosus-1a_F_contig15541:2..9531696318793.2711172-CDS-E-siliculosus-1a_F_contig15541:2..953Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig15541 3..953 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig15541.3211.1prot_E-siliculosus-1a_F_contig15541.3211.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig15541 3..953 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig15541.3211.1

>prot_E-siliculosus-1a_F_contig15541.3211.1 ID=prot_E-siliculosus-1a_F_contig15541.3211.1|Name=mRNA_E-siliculosus-1a_F_contig15541.3211.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=317bp
RSNLTLWHSAQVNRLLFERQPFERQTVEQVDTLRCTGVEVEREGKPQRAM
VNGEEGGGEVVLCAGAIGSPHLLQLSGVGPAELLREHGVELVHELPGVGE
NLQDHLQIRSVYKITNGKTLNAMASTLLGKAGIGLEYLLKRSGPMSMAPS
QLGAFTRSGAEQTHPNIQYHVQPLSLEAFGQPLHSYPAITASVCNLNPTS
RGTVRLKSSDPRQAPAISPNYLSTPEDQKVAADSLRVTRRIAEQPAFAKY
APEEVKPGVEYQTDDELTRLAGDIGTTIFHPVGTTRMGRDDDELAVVDAR
LRVRGISGLRVADADVM
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mRNA from alignment at E-siliculosus-1a_F_contig15541:3..953+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig15541.3211.1 ID=mRNA_E-siliculosus-1a_F_contig15541.3211.1|Name=mRNA_E-siliculosus-1a_F_contig15541.3211.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=951bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig15541:3..953+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CGTAGCAATTTAACGCTCTGGCACTCCGCCCAGGTCAATCGCCTGCTTTT TGAAAGACAGCCTTTTGAAAGACAGACTGTTGAACAGGTGGACACGCTGC GATGTACTGGCGTGGAAGTGGAACGTGAAGGTAAACCCCAGCGCGCCATG GTGAACGGGGAAGAGGGTGGCGGAGAAGTAGTGCTATGCGCGGGCGCGAT TGGGTCGCCACATCTATTACAGCTTTCAGGAGTGGGGCCAGCCGAGCTTC TGCGCGAGCACGGTGTTGAGTTAGTGCATGAACTGCCAGGTGTGGGCGAG AATCTTCAGGATCATCTGCAGATTCGTTCGGTATACAAAATCACCAATGG CAAAACCCTGAATGCCATGGCCAGTACATTGCTGGGTAAAGCGGGAATTG GCCTTGAGTATCTGCTTAAGCGCTCTGGGCCGATGAGTATGGCGCCTTCC CAATTGGGGGCTTTTACCCGTAGTGGGGCAGAGCAAACGCACCCTAATAT TCAATACCATGTACAGCCATTAAGCCTGGAGGCCTTTGGTCAGCCGTTAC ACTCGTACCCGGCGATTACCGCTAGCGTATGCAATTTGAACCCGACCAGC CGTGGCACGGTGCGGCTTAAAAGCAGTGATCCGCGCCAAGCGCCCGCTAT TTCTCCTAATTATCTGAGCACGCCAGAAGATCAAAAGGTGGCAGCAGATT CCTTGCGTGTGACGCGACGTATCGCCGAGCAGCCTGCGTTCGCTAAATAC GCTCCAGAGGAAGTGAAACCGGGCGTTGAGTACCAAACTGACGATGAGCT AACCCGCTTGGCAGGTGATATTGGCACGACTATCTTTCACCCTGTTGGCA CCACGCGTATGGGGCGCGATGACGATGAGCTGGCTGTAGTAGATGCACGT CTGAGAGTACGTGGCATAAGCGGTCTACGGGTGGCGGATGCAGACGTTAT G
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig15541:3..953+

>mRNA_E-siliculosus-1a_F_contig15541.3211.1 ID=mRNA_E-siliculosus-1a_F_contig15541.3211.1|Name=mRNA_E-siliculosus-1a_F_contig15541.3211.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1902bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig15541:3..953+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CGTAGCAATTTAACGCTCTGGCACTCCGCCCAGGTCAATCGCCTGCTTTT
TGAAAGACAGCCTTTTGAAAGACAGACTGTTGAACAGGTGGACACGCTGC
GATGTACTGGCGTGGAAGTGGAACGTGAAGGTAAACCCCAGCGCGCCATG
GTGAACGGGGAAGAGGGTGGCGGAGAAGTAGTGCTATGCGCGGGCGCGAT
TGGGTCGCCACATCTATTACAGCTTTCAGGAGTGGGGCCAGCCGAGCTTC
TGCGCGAGCACGGTGTTGAGTTAGTGCATGAACTGCCAGGTGTGGGCGAG
AATCTTCAGGATCATCTGCAGATTCGTTCGGTATACAAAATCACCAATGG
CAAAACCCTGAATGCCATGGCCAGTACATTGCTGGGTAAAGCGGGAATTG
GCCTTGAGTATCTGCTTAAGCGCTCTGGGCCGATGAGTATGGCGCCTTCC
CAATTGGGGGCTTTTACCCGTAGTGGGGCAGAGCAAACGCACCCTAATAT
TCAATACCATGTACAGCCATTAAGCCTGGAGGCCTTTGGTCAGCCGTTAC
ACTCGTACCCGGCGATTACCGCTAGCGTATGCAATTTGAACCCGACCAGC
CGTGGCACGGTGCGGCTTAAAAGCAGTGATCCGCGCCAAGCGCCCGCTAT
TTCTCCTAATTATCTGAGCACGCCAGAAGATCAAAAGGTGGCAGCAGATT
CCTTGCGTGTGACGCGACGTATCGCCGAGCAGCCTGCGTTCGCTAAATAC
GCTCCAGAGGAAGTGAAACCGGGCGTTGAGTACCAAACTGACGATGAGCT
AACCCGCTTGGCAGGTGATATTGGCACGACTATCTTTCACCCTGTTGGCA
CCACGCGTATGGGGCGCGATGACGATGAGCTGGCTGTAGTAGATGCACGT
CTGAGAGTACGTGGCATAAGCGGTCTACGGGTGGCGGATGCAGACGTTAT
GCGTAGCAATTTAACGCTCTGGCACTCCGCCCAGGTCAATCGCCTGCTTT
TTGAAAGACAGCCTTTTGAAAGACAGACTGTTGAACAGGTGGACACGCTG
CGATGTACTGGCGTGGAAGTGGAACGTGAAGGTAAACCCCAGCGCGCCAT
GGTGAACGGGGAAGAGGGTGGCGGAGAAGTAGTGCTATGCGCGGGCGCGA
TTGGGTCGCCACATCTATTACAGCTTTCAGGAGTGGGGCCAGCCGAGCTT
CTGCGCGAGCACGGTGTTGAGTTAGTGCATGAACTGCCAGGTGTGGGCGA
GAATCTTCAGGATCATCTGCAGATTCGTTCGGTATACAAAATCACCAATG
GCAAAACCCTGAATGCCATGGCCAGTACATTGCTGGGTAAAGCGGGAATT
GGCCTTGAGTATCTGCTTAAGCGCTCTGGGCCGATGAGTATGGCGCCTTC
CCAATTGGGGGCTTTTACCCGTAGTGGGGCAGAGCAAACGCACCCTAATA
TTCAATACCATGTACAGCCATTAAGCCTGGAGGCCTTTGGTCAGCCGTTA
CACTCGTACCCGGCGATTACCGCTAGCGTATGCAATTTGAACCCGACCAG
CCGTGGCACGGTGCGGCTTAAAAGCAGTGATCCGCGCCAAGCGCCCGCTA
TTTCTCCTAATTATCTGAGCACGCCAGAAGATCAAAAGGTGGCAGCAGAT
TCCTTGCGTGTGACGCGACGTATCGCCGAGCAGCCTGCGTTCGCTAAATA
CGCTCCAGAGGAAGTGAAACCGGGCGTTGAGTACCAAACTGACGATGAGC
TAACCCGCTTGGCAGGTGATATTGGCACGACTATCTTTCACCCTGTTGGC
ACCACGCGTATGGGGCGCGATGACGATGAGCTGGCTGTAGTAGATGCACG
TCTGAGAGTACGTGGCATAAGCGGTCTACGGGTGGCGGATGCAGACGTTA
TG
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